data_1HW9
#
_model_server_result.job_id            dXhRhUoaeiLhhT_HNOZfLQ 
_model_server_result.datetime_utc      '2024-10-31 07:14:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hw9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    1HW9 
#
_exptl.entry_id    1HW9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.56 
_cell.angle_gamma         90 
_cell.entry_id            1HW9 
_cell.length_a            74.55 
_cell.length_b            172.817 
_cell.length_c            80.033 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HW9 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 M N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1HW9 
_atom_sites.fract_transf_matrix[1][1]    0.013414 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADP A 1 102 102 ADP ADP . 
F 3 SIM A 1 4 4 SIM SIM . 
G 2 ADP B 1 101 101 ADP ADP . 
H 2 ADP B 1 104 104 ADP ADP . 
I 3 SIM B 1 3 3 SIM SIM . 
J 2 ADP C 1 103 103 ADP ADP . 
K 3 SIM C 1 1 1 SIM SIM . 
L 3 SIM C 1 2 2 SIM SIM . 
M 2 ADP D 1 105 105 ADP ADP . 
N 4 HOH A 1 1003 1003 HOH HOH . 
N 4 HOH A 2 1004 1004 HOH HOH . 
N 4 HOH A 3 1005 1005 HOH HOH . 
N 4 HOH A 4 1007 1007 HOH HOH . 
N 4 HOH A 5 1008 1008 HOH HOH . 
N 4 HOH A 6 1010 1010 HOH HOH . 
N 4 HOH A 7 1011 1011 HOH HOH . 
N 4 HOH A 8 1017 1017 HOH HOH . 
N 4 HOH A 9 1018 1018 HOH HOH . 
N 4 HOH A 10 1019 1019 HOH HOH . 
N 4 HOH A 11 1020 1020 HOH HOH . 
N 4 HOH A 12 1022 1022 HOH HOH . 
N 4 HOH A 13 1023 1023 HOH HOH . 
N 4 HOH A 14 1024 1024 HOH HOH . 
N 4 HOH A 15 1025 1025 HOH HOH . 
N 4 HOH A 16 1026 1026 HOH HOH . 
N 4 HOH A 17 1027 1027 HOH HOH . 
N 4 HOH A 18 1030 1030 HOH HOH . 
N 4 HOH A 19 1076 1076 HOH HOH . 
N 4 HOH A 20 1078 1078 HOH HOH . 
N 4 HOH A 21 1079 1079 HOH HOH . 
N 4 HOH A 22 1081 1081 HOH HOH . 
N 4 HOH A 23 1084 1084 HOH HOH . 
N 4 HOH A 24 1085 1085 HOH HOH . 
N 4 HOH A 25 1086 1086 HOH HOH . 
N 4 HOH A 26 1087 1087 HOH HOH . 
N 4 HOH A 27 1091 1091 HOH HOH . 
N 4 HOH A 28 1097 1097 HOH HOH . 
N 4 HOH A 29 1101 1101 HOH HOH . 
N 4 HOH A 30 1112 1112 HOH HOH . 
N 4 HOH A 31 1113 1113 HOH HOH . 
N 4 HOH A 32 1114 1114 HOH HOH . 
N 4 HOH A 33 1129 1129 HOH HOH . 
N 4 HOH A 34 1135 1135 HOH HOH . 
N 4 HOH A 35 1140 1140 HOH HOH . 
N 4 HOH A 36 1144 1144 HOH HOH . 
N 4 HOH A 37 1145 1145 HOH HOH . 
N 4 HOH A 38 1146 1146 HOH HOH . 
N 4 HOH A 39 1147 1147 HOH HOH . 
N 4 HOH A 40 1159 1159 HOH HOH . 
N 4 HOH A 41 1162 1162 HOH HOH . 
N 4 HOH A 42 1167 1167 HOH HOH . 
N 4 HOH A 43 1171 1171 HOH HOH . 
N 4 HOH A 44 1175 1175 HOH HOH . 
O 4 HOH B 1 1001 1001 HOH HOH . 
O 4 HOH B 2 1002 1002 HOH HOH . 
O 4 HOH B 3 1012 1012 HOH HOH . 
O 4 HOH B 4 1013 1013 HOH HOH . 
O 4 HOH B 5 1029 1029 HOH HOH . 
O 4 HOH B 6 1031 1031 HOH HOH . 
O 4 HOH B 7 1032 1032 HOH HOH . 
O 4 HOH B 8 1033 1033 HOH HOH . 
O 4 HOH B 9 1034 1034 HOH HOH . 
O 4 HOH B 10 1035 1035 HOH HOH . 
O 4 HOH B 11 1036 1036 HOH HOH . 
O 4 HOH B 12 1038 1038 HOH HOH . 
O 4 HOH B 13 1040 1040 HOH HOH . 
O 4 HOH B 14 1041 1041 HOH HOH . 
O 4 HOH B 15 1042 1042 HOH HOH . 
O 4 HOH B 16 1043 1043 HOH HOH . 
O 4 HOH B 17 1044 1044 HOH HOH . 
O 4 HOH B 18 1080 1080 HOH HOH . 
O 4 HOH B 19 1083 1083 HOH HOH . 
O 4 HOH B 20 1088 1088 HOH HOH . 
O 4 HOH B 21 1089 1089 HOH HOH . 
O 4 HOH B 22 1090 1090 HOH HOH . 
O 4 HOH B 23 1092 1092 HOH HOH . 
O 4 HOH B 24 1093 1093 HOH HOH . 
O 4 HOH B 25 1094 1094 HOH HOH . 
O 4 HOH B 26 1095 1095 HOH HOH . 
O 4 HOH B 27 1103 1103 HOH HOH . 
O 4 HOH B 28 1104 1104 HOH HOH . 
O 4 HOH B 29 1111 1111 HOH HOH . 
O 4 HOH B 30 1115 1115 HOH HOH . 
O 4 HOH B 31 1116 1116 HOH HOH . 
O 4 HOH B 32 1117 1117 HOH HOH . 
O 4 HOH B 33 1120 1120 HOH HOH . 
O 4 HOH B 34 1122 1122 HOH HOH . 
O 4 HOH B 35 1128 1128 HOH HOH . 
O 4 HOH B 36 1131 1131 HOH HOH . 
O 4 HOH B 37 1132 1132 HOH HOH . 
O 4 HOH B 38 1134 1134 HOH HOH . 
O 4 HOH B 39 1142 1142 HOH HOH . 
O 4 HOH B 40 1143 1143 HOH HOH . 
O 4 HOH B 41 1153 1153 HOH HOH . 
O 4 HOH B 42 1155 1155 HOH HOH . 
O 4 HOH B 43 1157 1157 HOH HOH . 
O 4 HOH B 44 1158 1158 HOH HOH . 
O 4 HOH B 45 1160 1160 HOH HOH . 
O 4 HOH B 46 1163 1163 HOH HOH . 
O 4 HOH B 47 1166 1166 HOH HOH . 
O 4 HOH B 48 1168 1168 HOH HOH . 
O 4 HOH B 49 1176 1176 HOH HOH . 
P 4 HOH C 1 1014 1014 HOH HOH . 
P 4 HOH C 2 1037 1037 HOH HOH . 
P 4 HOH C 3 1046 1046 HOH HOH . 
P 4 HOH C 4 1049 1049 HOH HOH . 
P 4 HOH C 5 1050 1050 HOH HOH . 
P 4 HOH C 6 1052 1052 HOH HOH . 
P 4 HOH C 7 1053 1053 HOH HOH . 
P 4 HOH C 8 1054 1054 HOH HOH . 
P 4 HOH C 9 1055 1055 HOH HOH . 
P 4 HOH C 10 1057 1057 HOH HOH . 
P 4 HOH C 11 1058 1058 HOH HOH . 
P 4 HOH C 12 1059 1059 HOH HOH . 
P 4 HOH C 13 1060 1060 HOH HOH . 
P 4 HOH C 14 1061 1061 HOH HOH . 
P 4 HOH C 15 1062 1062 HOH HOH . 
P 4 HOH C 16 1063 1063 HOH HOH . 
P 4 HOH C 17 1071 1071 HOH HOH . 
P 4 HOH C 18 1096 1096 HOH HOH . 
P 4 HOH C 19 1106 1106 HOH HOH . 
P 4 HOH C 20 1107 1107 HOH HOH . 
P 4 HOH C 21 1108 1108 HOH HOH . 
P 4 HOH C 22 1109 1109 HOH HOH . 
P 4 HOH C 23 1110 1110 HOH HOH . 
P 4 HOH C 24 1118 1118 HOH HOH . 
P 4 HOH C 25 1119 1119 HOH HOH . 
P 4 HOH C 26 1121 1121 HOH HOH . 
P 4 HOH C 27 1123 1123 HOH HOH . 
P 4 HOH C 28 1133 1133 HOH HOH . 
P 4 HOH C 29 1137 1137 HOH HOH . 
P 4 HOH C 30 1151 1151 HOH HOH . 
P 4 HOH C 31 1169 1169 HOH HOH . 
P 4 HOH C 32 1170 1170 HOH HOH . 
P 4 HOH C 33 1174 1174 HOH HOH . 
Q 4 HOH D 1 1006 1006 HOH HOH . 
Q 4 HOH D 2 1009 1009 HOH HOH . 
Q 4 HOH D 3 1015 1015 HOH HOH . 
Q 4 HOH D 4 1016 1016 HOH HOH . 
Q 4 HOH D 5 1021 1021 HOH HOH . 
Q 4 HOH D 6 1028 1028 HOH HOH . 
Q 4 HOH D 7 1039 1039 HOH HOH . 
Q 4 HOH D 8 1045 1045 HOH HOH . 
Q 4 HOH D 9 1047 1047 HOH HOH . 
Q 4 HOH D 10 1048 1048 HOH HOH . 
Q 4 HOH D 11 1051 1051 HOH HOH . 
Q 4 HOH D 12 1056 1056 HOH HOH . 
Q 4 HOH D 13 1064 1064 HOH HOH . 
Q 4 HOH D 14 1065 1065 HOH HOH . 
Q 4 HOH D 15 1066 1066 HOH HOH . 
Q 4 HOH D 16 1067 1067 HOH HOH . 
Q 4 HOH D 17 1068 1068 HOH HOH . 
Q 4 HOH D 18 1069 1069 HOH HOH . 
Q 4 HOH D 19 1070 1070 HOH HOH . 
Q 4 HOH D 20 1072 1072 HOH HOH . 
Q 4 HOH D 21 1073 1073 HOH HOH . 
Q 4 HOH D 22 1074 1074 HOH HOH . 
Q 4 HOH D 23 1075 1075 HOH HOH . 
Q 4 HOH D 24 1077 1077 HOH HOH . 
Q 4 HOH D 25 1082 1082 HOH HOH . 
Q 4 HOH D 26 1098 1098 HOH HOH . 
Q 4 HOH D 27 1099 1099 HOH HOH . 
Q 4 HOH D 28 1100 1100 HOH HOH . 
Q 4 HOH D 29 1102 1102 HOH HOH . 
Q 4 HOH D 30 1105 1105 HOH HOH . 
Q 4 HOH D 31 1124 1124 HOH HOH . 
Q 4 HOH D 32 1125 1125 HOH HOH . 
Q 4 HOH D 33 1126 1126 HOH HOH . 
Q 4 HOH D 34 1127 1127 HOH HOH . 
Q 4 HOH D 35 1130 1130 HOH HOH . 
Q 4 HOH D 36 1136 1136 HOH HOH . 
Q 4 HOH D 37 1138 1138 HOH HOH . 
Q 4 HOH D 38 1139 1139 HOH HOH . 
Q 4 HOH D 39 1141 1141 HOH HOH . 
Q 4 HOH D 40 1148 1148 HOH HOH . 
Q 4 HOH D 41 1149 1149 HOH HOH . 
Q 4 HOH D 42 1150 1150 HOH HOH . 
Q 4 HOH D 43 1152 1152 HOH HOH . 
Q 4 HOH D 44 1154 1154 HOH HOH . 
Q 4 HOH D 45 1156 1156 HOH HOH . 
Q 4 HOH D 46 1161 1161 HOH HOH . 
Q 4 HOH D 47 1164 1164 HOH HOH . 
Q 4 HOH D 48 1165 1165 HOH HOH . 
Q 4 HOH D 49 1172 1172 HOH HOH . 
Q 4 HOH D 50 1173 1173 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 2 30.346 17.723 13.385 1 100.56 ? PB ADP 101 B 1 
HETATM 2 O O1B ADP . . . G 2 28.96 17.307 13.861 1 100.48 ? O1B ADP 101 B 1 
HETATM 3 O O2B ADP . . . G 2 30.733 17.083 12.005 1 100.56 ? O2B ADP 101 B 1 
HETATM 4 O O3B ADP . . . G 2 30.553 19.23 13.374 1 100.56 ? O3B ADP 101 B 1 
HETATM 5 P PA ADP . . . G 2 31.518 15.828 15.302 1 100.56 ? PA ADP 101 B 1 
HETATM 6 O O1A ADP . . . G 2 30.311 15.808 16.208 1 100.56 ? O1A ADP 101 B 1 
HETATM 7 O O2A ADP . . . G 2 32.836 15.777 15.979 1 100.56 ? O2A ADP 101 B 1 
HETATM 8 O O3A ADP . . . G 2 31.462 17.159 14.347 1 100.56 ? O3A ADP 101 B 1 
HETATM 9 O O5' ADP . . . G 2 31.35 14.62 14.236 1 100.56 ? O5' ADP 101 B 1 
HETATM 10 C C5' ADP . . . G 2 32.364 14.454 13.207 1 100.56 ? C5' ADP 101 B 1 
HETATM 11 C C4' ADP . . . G 2 31.919 13.615 12.015 1 100.56 ? C4' ADP 101 B 1 
HETATM 12 O O4' ADP . . . G 2 30.41 13.62 11.881 1 100.54 ? O4' ADP 101 B 1 
HETATM 13 C C3' ADP . . . G 2 32.416 14.11 10.666 1 100.56 ? C3' ADP 101 B 1 
HETATM 14 O O3' ADP . . . G 2 33.7 13.514 10.375 1 100.29 ? O3' ADP 101 B 1 
HETATM 15 C C2' ADP . . . G 2 31.342 13.54 9.648 1 100.55 ? C2' ADP 101 B 1 
HETATM 16 O O2' ADP . . . G 2 31.598 12.163 9.234 1 100.56 ? O2' ADP 101 B 1 
HETATM 17 C C1' ADP . . . G 2 30.033 13.546 10.49 1 100.48 ? C1' ADP 101 B 1 
HETATM 18 N N9 ADP . . . G 2 29.064 14.685 10.121 1 100.56 ? N9 ADP 101 B 1 
HETATM 19 C C8 ADP . . . G 2 28.496 15.545 10.953 1 100.56 ? C8 ADP 101 B 1 
HETATM 20 N N7 ADP . . . G 2 27.73 16.385 10.354 1 100.47 ? N7 ADP 101 B 1 
HETATM 21 C C5 ADP . . . G 2 27.799 16.049 9.001 1 100.42 ? C5 ADP 101 B 1 
HETATM 22 C C6 ADP . . . G 2 27.19 16.571 7.789 1 100.31 ? C6 ADP 101 B 1 
HETATM 23 N N6 ADP . . . G 2 26.322 17.643 7.77 1 99.91 ? N6 ADP 101 B 1 
HETATM 24 N N1 ADP . . . G 2 27.504 15.963 6.625 1 100.24 ? N1 ADP 101 B 1 
HETATM 25 C C2 ADP . . . G 2 28.335 14.931 6.63 1 100.21 ? C2 ADP 101 B 1 
HETATM 26 N N3 ADP . . . G 2 28.942 14.38 7.691 1 100.31 ? N3 ADP 101 B 1 
HETATM 27 C C4 ADP . . . G 2 28.63 14.984 8.853 1 100.5 ? C4 ADP 101 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#