data_1HWI # _model_server_result.job_id n703Z_MnTFkHeH1oJcJXRA _model_server_result.datetime_utc '2024-12-06 11:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 1HWI # _exptl.entry_id 1HWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.25 _cell.angle_gamma 90 _cell.entry_id 1HWI _cell.length_a 74.765 _cell.length_b 175.059 _cell.length_c 74.838 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HWI _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 J N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 59 n n PB O2B ADP sing 60 n n PB O3B ADP sing 61 n n PB O3A ADP sing 62 n n O2B HOB2 ADP sing 63 n n O3B HOB3 ADP sing 64 n n PA O1A ADP doub 65 n n PA O2A ADP sing 66 n n PA O3A ADP sing 67 n n PA O5' ADP sing 68 n n O2A HOA2 ADP sing 69 n n O5' C5' ADP sing 70 n n C5' C4' ADP sing 71 n n C5' "H5'1" ADP sing 72 n n C5' "H5'2" ADP sing 73 n n C4' O4' ADP sing 74 n n C4' C3' ADP sing 75 n n C4' H4' ADP sing 76 n n O4' C1' ADP sing 77 n n C3' O3' ADP sing 78 n n C3' C2' ADP sing 79 n n C3' H3' ADP sing 80 n n O3' HO3' ADP sing 81 n n C2' O2' ADP sing 82 n n C2' C1' ADP sing 83 n n C2' H2' ADP sing 84 n n O2' HO2' ADP sing 85 n n C1' N9 ADP sing 86 n n C1' H1' ADP sing 87 n n N9 C8 ADP sing 88 n y N9 C4 ADP sing 89 n y C8 N7 ADP doub 90 n y C8 H8 ADP sing 91 n n N7 C5 ADP sing 92 n y C5 C6 ADP sing 93 n y C5 C4 ADP doub 94 n y C6 N6 ADP sing 95 n n C6 N1 ADP doub 96 n y N6 HN61 ADP sing 97 n n N6 HN62 ADP sing 98 n n N1 C2 ADP sing 99 n y C2 N3 ADP doub 100 n y C2 H2 ADP sing 101 n n N3 C4 ADP sing 102 n y # _atom_sites.entry_id 1HWI _atom_sites.fract_transf_matrix[1][1] 0.013375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 115 A 1 2 2 115 115 . F 3 ADP B 1 101 101 ADP ADP . G 3 ADP B 1 102 102 ADP ADP . H 2 115 B 1 1 1 115 115 . I 2 115 C 1 4 4 115 115 . J 3 ADP D 1 103 103 ADP ADP . K 2 115 D 1 3 3 115 115 . L 4 HOH A 1 1001 1001 HOH HOH . L 4 HOH A 2 1005 1005 HOH HOH . L 4 HOH A 3 1006 1006 HOH HOH . L 4 HOH A 4 1007 1007 HOH HOH . L 4 HOH A 5 1008 1008 HOH HOH . L 4 HOH A 6 1009 1009 HOH HOH . L 4 HOH A 7 1010 1010 HOH HOH . L 4 HOH A 8 1012 1012 HOH HOH . L 4 HOH A 9 1013 1013 HOH HOH . L 4 HOH A 10 1014 1014 HOH HOH . L 4 HOH A 11 1015 1015 HOH HOH . L 4 HOH A 12 1016 1016 HOH HOH . L 4 HOH A 13 1017 1017 HOH HOH . L 4 HOH A 14 1018 1018 HOH HOH . L 4 HOH A 15 1022 1022 HOH HOH . L 4 HOH A 16 1023 1023 HOH HOH . L 4 HOH A 17 1026 1026 HOH HOH . L 4 HOH A 18 1027 1027 HOH HOH . L 4 HOH A 19 1029 1029 HOH HOH . L 4 HOH A 20 1030 1030 HOH HOH . L 4 HOH A 21 1031 1031 HOH HOH . L 4 HOH A 22 1032 1032 HOH HOH . L 4 HOH A 23 1033 1033 HOH HOH . L 4 HOH A 24 1034 1034 HOH HOH . L 4 HOH A 25 1035 1035 HOH HOH . L 4 HOH A 26 1036 1036 HOH HOH . L 4 HOH A 27 1037 1037 HOH HOH . L 4 HOH A 28 1039 1039 HOH HOH . L 4 HOH A 29 1040 1040 HOH HOH . L 4 HOH A 30 1041 1041 HOH HOH . L 4 HOH A 31 1042 1042 HOH HOH . L 4 HOH A 32 1116 1116 HOH HOH . L 4 HOH A 33 1120 1120 HOH HOH . L 4 HOH A 34 1122 1122 HOH HOH . L 4 HOH A 35 1124 1124 HOH HOH . L 4 HOH A 36 1125 1125 HOH HOH . L 4 HOH A 37 1126 1126 HOH HOH . L 4 HOH A 38 1128 1128 HOH HOH . L 4 HOH A 39 1129 1129 HOH HOH . L 4 HOH A 40 1153 1153 HOH HOH . L 4 HOH A 41 1156 1156 HOH HOH . L 4 HOH A 42 1157 1157 HOH HOH . L 4 HOH A 43 1161 1161 HOH HOH . L 4 HOH A 44 1165 1165 HOH HOH . L 4 HOH A 45 1176 1176 HOH HOH . L 4 HOH A 46 1177 1177 HOH HOH . L 4 HOH A 47 1178 1178 HOH HOH . L 4 HOH A 48 1179 1179 HOH HOH . L 4 HOH A 49 1191 1191 HOH HOH . L 4 HOH A 50 1206 1206 HOH HOH . M 4 HOH B 1 1002 1002 HOH HOH . M 4 HOH B 2 1003 1003 HOH HOH . M 4 HOH B 3 1004 1004 HOH HOH . M 4 HOH B 4 1011 1011 HOH HOH . M 4 HOH B 5 1019 1019 HOH HOH . M 4 HOH B 6 1021 1021 HOH HOH . M 4 HOH B 7 1024 1024 HOH HOH . M 4 HOH B 8 1025 1025 HOH HOH . M 4 HOH B 9 1043 1043 HOH HOH . M 4 HOH B 10 1044 1044 HOH HOH . M 4 HOH B 11 1045 1045 HOH HOH . M 4 HOH B 12 1046 1046 HOH HOH . M 4 HOH B 13 1047 1047 HOH HOH . M 4 HOH B 14 1048 1048 HOH HOH . M 4 HOH B 15 1049 1049 HOH HOH . M 4 HOH B 16 1050 1050 HOH HOH . M 4 HOH B 17 1051 1051 HOH HOH . M 4 HOH B 18 1053 1053 HOH HOH . M 4 HOH B 19 1054 1054 HOH HOH . M 4 HOH B 20 1056 1056 HOH HOH . M 4 HOH B 21 1057 1057 HOH HOH . M 4 HOH B 22 1058 1058 HOH HOH . M 4 HOH B 23 1059 1059 HOH HOH . M 4 HOH B 24 1060 1060 HOH HOH . M 4 HOH B 25 1061 1061 HOH HOH . M 4 HOH B 26 1062 1062 HOH HOH . M 4 HOH B 27 1063 1063 HOH HOH . M 4 HOH B 28 1064 1064 HOH HOH . M 4 HOH B 29 1093 1093 HOH HOH . M 4 HOH B 30 1115 1115 HOH HOH . M 4 HOH B 31 1119 1119 HOH HOH . M 4 HOH B 32 1123 1123 HOH HOH . M 4 HOH B 33 1130 1130 HOH HOH . M 4 HOH B 34 1131 1131 HOH HOH . M 4 HOH B 35 1132 1132 HOH HOH . M 4 HOH B 36 1133 1133 HOH HOH . M 4 HOH B 37 1134 1134 HOH HOH . M 4 HOH B 38 1137 1137 HOH HOH . M 4 HOH B 39 1138 1138 HOH HOH . M 4 HOH B 40 1139 1139 HOH HOH . M 4 HOH B 41 1163 1163 HOH HOH . M 4 HOH B 42 1164 1164 HOH HOH . M 4 HOH B 43 1173 1173 HOH HOH . M 4 HOH B 44 1174 1174 HOH HOH . M 4 HOH B 45 1175 1175 HOH HOH . M 4 HOH B 46 1180 1180 HOH HOH . M 4 HOH B 47 1181 1181 HOH HOH . M 4 HOH B 48 1182 1182 HOH HOH . M 4 HOH B 49 1184 1184 HOH HOH . M 4 HOH B 50 1193 1193 HOH HOH . M 4 HOH B 51 1194 1194 HOH HOH . M 4 HOH B 52 1195 1195 HOH HOH . M 4 HOH B 53 1198 1198 HOH HOH . M 4 HOH B 54 1205 1205 HOH HOH . N 4 HOH C 1 1028 1028 HOH HOH . N 4 HOH C 2 1052 1052 HOH HOH . N 4 HOH C 3 1065 1065 HOH HOH . N 4 HOH C 4 1066 1066 HOH HOH . N 4 HOH C 5 1067 1067 HOH HOH . N 4 HOH C 6 1070 1070 HOH HOH . N 4 HOH C 7 1071 1071 HOH HOH . N 4 HOH C 8 1073 1073 HOH HOH . N 4 HOH C 9 1074 1074 HOH HOH . N 4 HOH C 10 1075 1075 HOH HOH . N 4 HOH C 11 1076 1076 HOH HOH . N 4 HOH C 12 1077 1077 HOH HOH . N 4 HOH C 13 1078 1078 HOH HOH . N 4 HOH C 14 1080 1080 HOH HOH . N 4 HOH C 15 1083 1083 HOH HOH . N 4 HOH C 16 1084 1084 HOH HOH . N 4 HOH C 17 1085 1085 HOH HOH . N 4 HOH C 18 1088 1088 HOH HOH . N 4 HOH C 19 1089 1089 HOH HOH . N 4 HOH C 20 1090 1090 HOH HOH . N 4 HOH C 21 1091 1091 HOH HOH . N 4 HOH C 22 1092 1092 HOH HOH . N 4 HOH C 23 1094 1094 HOH HOH . N 4 HOH C 24 1127 1127 HOH HOH . N 4 HOH C 25 1140 1140 HOH HOH . N 4 HOH C 26 1142 1142 HOH HOH . N 4 HOH C 27 1144 1144 HOH HOH . N 4 HOH C 28 1145 1145 HOH HOH . N 4 HOH C 29 1146 1146 HOH HOH . N 4 HOH C 30 1147 1147 HOH HOH . N 4 HOH C 31 1148 1148 HOH HOH . N 4 HOH C 32 1167 1167 HOH HOH . N 4 HOH C 33 1168 1168 HOH HOH . N 4 HOH C 34 1169 1169 HOH HOH . N 4 HOH C 35 1170 1170 HOH HOH . N 4 HOH C 36 1183 1183 HOH HOH . N 4 HOH C 37 1185 1185 HOH HOH . N 4 HOH C 38 1186 1186 HOH HOH . N 4 HOH C 39 1187 1187 HOH HOH . N 4 HOH C 40 1196 1196 HOH HOH . N 4 HOH C 41 1199 1199 HOH HOH . N 4 HOH C 42 1200 1200 HOH HOH . N 4 HOH C 43 1208 1208 HOH HOH . N 4 HOH C 44 1209 1209 HOH HOH . O 4 HOH D 1 1020 1020 HOH HOH . O 4 HOH D 2 1038 1038 HOH HOH . O 4 HOH D 3 1068 1068 HOH HOH . O 4 HOH D 4 1079 1079 HOH HOH . O 4 HOH D 5 1081 1081 HOH HOH . O 4 HOH D 6 1082 1082 HOH HOH . O 4 HOH D 7 1086 1086 HOH HOH . O 4 HOH D 8 1087 1087 HOH HOH . O 4 HOH D 9 1095 1095 HOH HOH . O 4 HOH D 10 1096 1096 HOH HOH . O 4 HOH D 11 1097 1097 HOH HOH . O 4 HOH D 12 1098 1098 HOH HOH . O 4 HOH D 13 1099 1099 HOH HOH . O 4 HOH D 14 1100 1100 HOH HOH . O 4 HOH D 15 1101 1101 HOH HOH . O 4 HOH D 16 1102 1102 HOH HOH . O 4 HOH D 17 1103 1103 HOH HOH . O 4 HOH D 18 1104 1104 HOH HOH . O 4 HOH D 19 1105 1105 HOH HOH . O 4 HOH D 20 1106 1106 HOH HOH . O 4 HOH D 21 1107 1107 HOH HOH . O 4 HOH D 22 1108 1108 HOH HOH . O 4 HOH D 23 1109 1109 HOH HOH . O 4 HOH D 24 1110 1110 HOH HOH . O 4 HOH D 25 1111 1111 HOH HOH . O 4 HOH D 26 1112 1112 HOH HOH . O 4 HOH D 27 1113 1113 HOH HOH . O 4 HOH D 28 1114 1114 HOH HOH . O 4 HOH D 29 1121 1121 HOH HOH . O 4 HOH D 30 1141 1141 HOH HOH . O 4 HOH D 31 1143 1143 HOH HOH . O 4 HOH D 32 1149 1149 HOH HOH . O 4 HOH D 33 1150 1150 HOH HOH . O 4 HOH D 34 1151 1151 HOH HOH . O 4 HOH D 35 1152 1152 HOH HOH . O 4 HOH D 36 1154 1154 HOH HOH . O 4 HOH D 37 1155 1155 HOH HOH . O 4 HOH D 38 1158 1158 HOH HOH . O 4 HOH D 39 1160 1160 HOH HOH . O 4 HOH D 40 1171 1171 HOH HOH . O 4 HOH D 41 1172 1172 HOH HOH . O 4 HOH D 42 1188 1188 HOH HOH . O 4 HOH D 43 1189 1189 HOH HOH . O 4 HOH D 44 1190 1190 HOH HOH . O 4 HOH D 45 1192 1192 HOH HOH . O 4 HOH D 46 1197 1197 HOH HOH . O 4 HOH D 47 1201 1201 HOH HOH . O 4 HOH D 48 1202 1202 HOH HOH . O 4 HOH D 49 1203 1203 HOH HOH . O 4 HOH D 50 1204 1204 HOH HOH . O 4 HOH D 51 1207 1207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 3 12.357 -7.741 -26.738 1 75.3 ? PB ADP 102 B 1 HETATM 2 O O1B ADP . . . G 3 11.765 -8.85 -25.89 1 75.81 ? O1B ADP 102 B 1 HETATM 3 O O2B ADP . . . G 3 13.561 -8.228 -27.594 1 76.32 ? O2B ADP 102 B 1 HETATM 4 O O3B ADP . . . G 3 11.326 -7.007 -27.56 1 75.12 ? O3B ADP 102 B 1 HETATM 5 P PA ADP . . . G 3 13.067 -6.518 -24.211 1 76.49 ? PA ADP 102 B 1 HETATM 6 O O1A ADP . . . G 3 11.663 -6.622 -23.664 1 76.63 ? O1A ADP 102 B 1 HETATM 7 O O2A ADP . . . G 3 13.818 -5.294 -23.876 1 74.06 ? O2A ADP 102 B 1 HETATM 8 O O3A ADP . . . G 3 13.003 -6.652 -25.835 1 76.87 ? O3A ADP 102 B 1 HETATM 9 O O5' ADP . . . G 3 13.862 -7.836 -23.739 1 71.51 ? O5' ADP 102 B 1 HETATM 10 C C5' ADP . . . G 3 15.233 -8.039 -24.153 1 65.48 ? C5' ADP 102 B 1 HETATM 11 C C4' ADP . . . G 3 16.18 -7.98 -22.965 1 62.45 ? C4' ADP 102 B 1 HETATM 12 O O4' ADP . . . G 3 15.696 -6.885 -22.052 1 58.68 ? O4' ADP 102 B 1 HETATM 13 C C3' ADP . . . G 3 16.186 -9.224 -22.082 1 60.83 ? C3' ADP 102 B 1 HETATM 14 O O3' ADP . . . G 3 17.265 -10.098 -22.481 1 62.42 ? O3' ADP 102 B 1 HETATM 15 C C2' ADP . . . G 3 16.502 -8.657 -20.634 1 58.65 ? C2' ADP 102 B 1 HETATM 16 O O2' ADP . . . G 3 17.934 -8.447 -20.386 1 59.73 ? O2' ADP 102 B 1 HETATM 17 C C1' ADP . . . G 3 15.866 -7.25 -20.674 1 53.91 ? C1' ADP 102 B 1 HETATM 18 N N9 ADP . . . G 3 14.493 -7.172 -19.987 1 46.85 ? N9 ADP 102 B 1 HETATM 19 C C8 ADP . . . G 3 13.312 -7.4 -20.545 1 44.18 ? C8 ADP 102 B 1 HETATM 20 N N7 ADP . . . G 3 12.336 -7.249 -19.723 1 40.86 ? N7 ADP 102 B 1 HETATM 21 C C5 ADP . . . G 3 12.934 -6.888 -18.515 1 39.77 ? C5 ADP 102 B 1 HETATM 22 C C6 ADP . . . G 3 12.439 -6.566 -17.201 1 36.44 ? C6 ADP 102 B 1 HETATM 23 N N6 ADP . . . G 3 11.107 -6.56 -16.881 1 31.39 ? N6 ADP 102 B 1 HETATM 24 N N1 ADP . . . G 3 13.343 -6.254 -16.251 1 34.12 ? N1 ADP 102 B 1 HETATM 25 C C2 ADP . . . G 3 14.625 -6.253 -16.551 1 35.58 ? C2 ADP 102 B 1 HETATM 26 N N3 ADP . . . G 3 15.177 -6.534 -17.737 1 38.84 ? N3 ADP 102 B 1 HETATM 27 C C4 ADP . . . G 3 14.279 -6.844 -18.678 1 41.57 ? C4 ADP 102 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #