data_1HWM # _model_server_result.job_id lEEjKH9ttazYR1fpcdt09w _model_server_result.datetime_utc '2024-12-26 21:15:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":280}' # _entry.id 1HWM # _exptl.entry_id 1HWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HWM _cell.length_a 57.33 _cell.length_b 97.69 _cell.length_c 113.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 267 NAG 3 n C NAG 2 C 2 NAG B 268 NAG 3 n C BMA 3 C 3 BMA B 269 MAN 3 n C MAN 4 C 4 MAN B 271 MAN 3 n C BMA 5 C 5 BMA B 270 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 249 A CYS 249 1_555 B SG CYS 5 B CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 63 B CYS 63 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 151 B CYS 151 1_555 B SG CYS 166 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 192 B CYS 192 1_555 B SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B ND2 ASN 186 B ASN 186 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale3 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale4 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale5 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 107 n n C1 O1 GAL sing 108 n n C1 O5 GAL sing 109 n n C1 H1 GAL sing 110 n n C2 C3 GAL sing 111 n n C2 O2 GAL sing 112 n n C2 H2 GAL sing 113 n n C3 C4 GAL sing 114 n n C3 O3 GAL sing 115 n n C3 H3 GAL sing 116 n n C4 C5 GAL sing 117 n n C4 O4 GAL sing 118 n n C4 H4 GAL sing 119 n n C5 C6 GAL sing 120 n n C5 O5 GAL sing 121 n n C5 H5 GAL sing 122 n n C6 O6 GAL sing 123 n n C6 H61 GAL sing 124 n n C6 H62 GAL sing 125 n n O1 HO1 GAL sing 126 n n O2 HO2 GAL sing 127 n n O3 HO3 GAL sing 128 n n O4 HO4 GAL sing 129 n n O6 HO6 GAL sing 130 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1HWM _atom_sites.fract_transf_matrix[1][1] 0.017443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GAL B 1 280 280 GAL GAL . E 5 HOH A 1 303 303 HOH WAT . E 5 HOH A 2 305 305 HOH WAT . E 5 HOH A 3 306 306 HOH WAT . E 5 HOH A 4 307 307 HOH WAT . E 5 HOH A 5 308 308 HOH WAT . E 5 HOH A 6 310 310 HOH WAT . E 5 HOH A 7 311 311 HOH WAT . E 5 HOH A 8 312 312 HOH WAT . E 5 HOH A 9 313 313 HOH WAT . E 5 HOH A 10 314 314 HOH WAT . E 5 HOH A 11 315 315 HOH WAT . E 5 HOH A 12 319 319 HOH WAT . E 5 HOH A 13 320 320 HOH WAT . E 5 HOH A 14 325 325 HOH WAT . E 5 HOH A 15 326 326 HOH WAT . E 5 HOH A 16 335 335 HOH WAT . E 5 HOH A 17 336 336 HOH WAT . E 5 HOH A 18 342 342 HOH WAT . E 5 HOH A 19 345 345 HOH WAT . E 5 HOH A 20 347 347 HOH WAT . E 5 HOH A 21 349 349 HOH WAT . E 5 HOH A 22 351 351 HOH WAT . E 5 HOH A 23 353 353 HOH WAT . E 5 HOH A 24 354 354 HOH WAT . E 5 HOH A 25 356 356 HOH WAT . E 5 HOH A 26 357 357 HOH WAT . F 5 HOH B 1 301 301 HOH WAT . F 5 HOH B 2 302 302 HOH WAT . F 5 HOH B 3 304 304 HOH WAT . F 5 HOH B 4 309 309 HOH WAT . F 5 HOH B 5 316 316 HOH WAT . F 5 HOH B 6 317 317 HOH WAT . F 5 HOH B 7 318 318 HOH WAT . F 5 HOH B 8 321 321 HOH WAT . F 5 HOH B 9 322 322 HOH WAT . F 5 HOH B 10 323 323 HOH WAT . F 5 HOH B 11 324 324 HOH WAT . F 5 HOH B 12 327 327 HOH WAT . F 5 HOH B 13 328 328 HOH WAT . F 5 HOH B 14 329 329 HOH WAT . F 5 HOH B 15 330 330 HOH WAT . F 5 HOH B 16 332 332 HOH WAT . F 5 HOH B 17 333 333 HOH WAT . F 5 HOH B 18 334 334 HOH WAT . F 5 HOH B 19 337 337 HOH WAT . F 5 HOH B 20 339 339 HOH WAT . F 5 HOH B 21 341 341 HOH WAT . F 5 HOH B 22 344 344 HOH WAT . F 5 HOH B 23 346 346 HOH WAT . F 5 HOH B 24 348 348 HOH WAT . F 5 HOH B 25 350 350 HOH WAT . F 5 HOH B 26 352 352 HOH WAT . F 5 HOH B 27 355 355 HOH WAT . F 5 HOH B 28 358 358 HOH WAT . F 5 HOH B 29 359 359 HOH WAT . F 5 HOH B 30 360 360 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . D 4 41.916 21.337 89.524 1 19.39 ? C1 GAL 280 B 1 HETATM 2 C C2 GAL . . . D 4 41.499 20.645 90.829 1 19.39 ? C2 GAL 280 B 1 HETATM 3 C C3 GAL . . . D 4 40.879 19.286 90.49 1 19.39 ? C3 GAL 280 B 1 HETATM 4 C C4 GAL . . . D 4 39.707 19.482 89.528 1 19.39 ? C4 GAL 280 B 1 HETATM 5 C C5 GAL . . . D 4 40.18 20.235 88.284 1 19.39 ? C5 GAL 280 B 1 HETATM 6 C C6 GAL . . . D 4 39.039 20.546 87.331 1 19.39 ? C6 GAL 280 B 1 HETATM 7 O O1 GAL . . . D 4 42.436 22.595 89.797 1 19.39 ? O1 GAL 280 B 1 HETATM 8 O O2 GAL . . . D 4 42.631 20.473 91.671 1 19.39 ? O2 GAL 280 B 1 HETATM 9 O O3 GAL . . . D 4 40.433 18.633 91.669 1 19.39 ? O3 GAL 280 B 1 HETATM 10 O O4 GAL . . . D 4 38.676 20.223 90.173 1 19.39 ? O4 GAL 280 B 1 HETATM 11 O O5 GAL . . . D 4 40.779 21.498 88.658 1 19.39 ? O5 GAL 280 B 1 HETATM 12 O O6 GAL . . . D 4 38.513 19.357 86.751 1 19.39 ? O6 GAL 280 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #