data_1HWY # _model_server_result.job_id 2_GHFDraalspsNhyIrcchA _model_server_result.datetime_utc '2024-11-23 19:39:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":506}' # _entry.id 1HWY # _exptl.entry_id 1HWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.2 _cell.angle_gamma 90 _cell.entry_id 1HWY _cell.length_a 122.5 _cell.length_b 101 _cell.length_c 164.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 R N N ? 3 Y N N ? 3 FA N N ? 3 MA N N ? 3 TA N N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 1HWY _atom_sites.fract_transf_matrix[1][1] 0.008163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 502 14 PO4 PO4 . H 2 PO4 A 1 503 15 PO4 PO4 . I 2 PO4 A 1 504 16 PO4 PO4 . J 2 PO4 A 1 505 17 PO4 PO4 . K 3 AKG A 1 506 30 AKG AKG . L 4 NAD A 1 507 32 NAD NAD . M 4 NAD A 1 508 38 NAD NAD . N 2 PO4 B 1 502 4 PO4 PO4 . O 2 PO4 B 1 503 11 PO4 PO4 . P 2 PO4 B 1 504 13 PO4 PO4 . Q 2 PO4 B 1 505 21 PO4 PO4 . R 3 AKG B 1 506 29 AKG AKG . S 4 NAD B 1 507 35 NAD NAD . T 4 NAD B 1 508 40 NAD NAD . U 2 PO4 C 1 502 3 PO4 PO4 . V 2 PO4 C 1 503 10 PO4 PO4 . W 2 PO4 C 1 504 18 PO4 PO4 . X 2 PO4 C 1 505 20 PO4 PO4 . Y 3 AKG C 1 506 27 AKG AKG . Z 4 NAD C 1 507 36 NAD NAD . AA 4 NAD C 1 508 37 NAD NAD . BA 2 PO4 D 1 502 2 PO4 PO4 . CA 2 PO4 D 1 503 9 PO4 PO4 . DA 2 PO4 D 1 504 19 PO4 PO4 . EA 2 PO4 D 1 505 24 PO4 PO4 . FA 3 AKG D 1 506 26 AKG AKG . GA 4 NAD D 1 507 31 NAD NAD . HA 4 NAD D 1 508 41 NAD NAD . IA 2 PO4 E 1 502 1 PO4 PO4 . JA 2 PO4 E 1 503 8 PO4 PO4 . KA 2 PO4 E 1 504 12 PO4 PO4 . LA 2 PO4 E 1 505 23 PO4 PO4 . MA 3 AKG E 1 506 28 AKG AKG . NA 4 NAD E 1 507 34 NAD NAD . OA 4 NAD E 1 508 42 NAD NAD . PA 2 PO4 F 1 502 5 PO4 PO4 . QA 2 PO4 F 1 503 6 PO4 PO4 . RA 2 PO4 F 1 504 7 PO4 PO4 . SA 2 PO4 F 1 505 22 PO4 PO4 . TA 3 AKG F 1 506 25 AKG AKG . UA 4 NAD F 1 507 33 NAD NAD . VA 4 NAD F 1 508 39 NAD NAD . WA 5 HOH A 1 509 43 HOH HOH . WA 5 HOH A 2 510 44 HOH HOH . WA 5 HOH A 3 511 45 HOH HOH . WA 5 HOH A 4 512 46 HOH HOH . WA 5 HOH A 5 513 77 HOH HOH . WA 5 HOH A 6 514 78 HOH HOH . XA 5 HOH B 1 509 47 HOH HOH . XA 5 HOH B 2 510 48 HOH HOH . XA 5 HOH B 3 511 49 HOH HOH . XA 5 HOH B 4 512 50 HOH HOH . XA 5 HOH B 5 513 51 HOH HOH . XA 5 HOH B 6 514 52 HOH HOH . YA 5 HOH C 1 509 55 HOH HOH . YA 5 HOH C 2 510 56 HOH HOH . YA 5 HOH C 3 511 57 HOH HOH . YA 5 HOH C 4 512 58 HOH HOH . YA 5 HOH C 5 513 65 HOH HOH . YA 5 HOH C 6 514 66 HOH HOH . ZA 5 HOH D 1 509 61 HOH HOH . ZA 5 HOH D 2 510 62 HOH HOH . ZA 5 HOH D 3 511 63 HOH HOH . ZA 5 HOH D 4 512 64 HOH HOH . ZA 5 HOH D 5 513 71 HOH HOH . ZA 5 HOH D 6 514 72 HOH HOH . AB 5 HOH E 1 509 59 HOH HOH . AB 5 HOH E 2 510 60 HOH HOH . AB 5 HOH E 3 511 67 HOH HOH . AB 5 HOH E 4 512 68 HOH HOH . AB 5 HOH E 5 513 69 HOH HOH . AB 5 HOH E 6 514 70 HOH HOH . BB 5 HOH F 1 509 53 HOH HOH . BB 5 HOH F 2 510 54 HOH HOH . BB 5 HOH F 3 511 73 HOH HOH . BB 5 HOH F 4 512 74 HOH HOH . BB 5 HOH F 5 513 75 HOH HOH . BB 5 HOH F 6 514 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . K 3 14.27 35.496 69.847 1 8.89 ? C1 AKG 506 A 1 HETATM 2 O O1 AKG . . . K 3 15.373 35.847 69.339 1 3.67 ? O1 AKG 506 A 1 HETATM 3 O O2 AKG . . . K 3 13.726 35.604 70.965 1 6.46 ? O2 AKG 506 A 1 HETATM 4 C C2 AKG . . . K 3 13.317 34.745 68.822 1 9.37 ? C2 AKG 506 A 1 HETATM 5 O O5 AKG . . . K 3 12.243 34.415 69.302 1 6.95 ? O5 AKG 506 A 1 HETATM 6 C C3 AKG . . . K 3 13.836 34.55 67.392 1 12.03 ? C3 AKG 506 A 1 HETATM 7 C C4 AKG . . . K 3 13.996 33.155 66.859 1 8.7 ? C4 AKG 506 A 1 HETATM 8 C C5 AKG . . . K 3 14.518 32.974 65.466 1 3 ? C5 AKG 506 A 1 HETATM 9 O O3 AKG . . . K 3 14.635 31.862 64.987 1 2 ? O3 AKG 506 A 1 HETATM 10 O O4 AKG . . . K 3 14.81 34.059 64.807 1 2 ? O4 AKG 506 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #