data_1HWY # _model_server_result.job_id sl_EsRlD3IDSAxhGPpqjgQ _model_server_result.datetime_utc '2024-11-27 13:14:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":508}' # _entry.id 1HWY # _exptl.entry_id 1HWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.2 _cell.angle_gamma 90 _cell.entry_id 1HWY _cell.length_a 122.5 _cell.length_b 101 _cell.length_c 164.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 M N N ? 4 S N N ? 4 T N N ? 4 Z N N ? 4 AA N N ? 4 GA N N ? 4 HA N N ? 4 NA N N ? 4 OA N N ? 4 UA N N ? 4 VA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 252 n n PA O2A NAD sing 253 n n PA O5B NAD sing 254 n n PA O3 NAD sing 255 n n O2A HOA2 NAD sing 256 n n O5B C5B NAD sing 257 n n C5B C4B NAD sing 258 n n C5B H51A NAD sing 259 n n C5B H52A NAD sing 260 n n C4B O4B NAD sing 261 n n C4B C3B NAD sing 262 n n C4B H4B NAD sing 263 n n O4B C1B NAD sing 264 n n C3B O3B NAD sing 265 n n C3B C2B NAD sing 266 n n C3B H3B NAD sing 267 n n O3B HO3A NAD sing 268 n n C2B O2B NAD sing 269 n n C2B C1B NAD sing 270 n n C2B H2B NAD sing 271 n n O2B HO2A NAD sing 272 n n C1B N9A NAD sing 273 n n C1B H1B NAD sing 274 n n N9A C8A NAD sing 275 n y N9A C4A NAD sing 276 n y C8A N7A NAD doub 277 n y C8A H8A NAD sing 278 n n N7A C5A NAD sing 279 n y C5A C6A NAD sing 280 n y C5A C4A NAD doub 281 n y C6A N6A NAD sing 282 n n C6A N1A NAD doub 283 n y N6A H61A NAD sing 284 n n N6A H62A NAD sing 285 n n N1A C2A NAD sing 286 n y C2A N3A NAD doub 287 n y C2A H2A NAD sing 288 n n N3A C4A NAD sing 289 n y O3 PN NAD sing 290 n n PN O1N NAD doub 291 n n PN O2N NAD sing 292 n n PN O5D NAD sing 293 n n O5D C5D NAD sing 294 n n C5D C4D NAD sing 295 n n C5D H51N NAD sing 296 n n C5D H52N NAD sing 297 n n C4D O4D NAD sing 298 n n C4D C3D NAD sing 299 n n C4D H4D NAD sing 300 n n O4D C1D NAD sing 301 n n C3D O3D NAD sing 302 n n C3D C2D NAD sing 303 n n C3D H3D NAD sing 304 n n O3D HO3N NAD sing 305 n n C2D O2D NAD sing 306 n n C2D C1D NAD sing 307 n n C2D H2D NAD sing 308 n n O2D HO2N NAD sing 309 n n C1D N1N NAD sing 310 n n C1D H1D NAD sing 311 n n N1N C2N NAD sing 312 n y N1N C6N NAD doub 313 n y C2N C3N NAD doub 314 n y C2N H2N NAD sing 315 n n C3N C7N NAD sing 316 n n C3N C4N NAD sing 317 n y C7N O7N NAD doub 318 n n C7N N7N NAD sing 319 n n N7N H71N NAD sing 320 n n N7N H72N NAD sing 321 n n C4N C5N NAD doub 322 n y C4N H4N NAD sing 323 n n C5N C6N NAD sing 324 n y C5N H5N NAD sing 325 n n C6N H6N NAD sing 326 n n # _atom_sites.entry_id 1HWY _atom_sites.fract_transf_matrix[1][1] 0.008163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 502 14 PO4 PO4 . H 2 PO4 A 1 503 15 PO4 PO4 . I 2 PO4 A 1 504 16 PO4 PO4 . J 2 PO4 A 1 505 17 PO4 PO4 . K 3 AKG A 1 506 30 AKG AKG . L 4 NAD A 1 507 32 NAD NAD . M 4 NAD A 1 508 38 NAD NAD . N 2 PO4 B 1 502 4 PO4 PO4 . O 2 PO4 B 1 503 11 PO4 PO4 . P 2 PO4 B 1 504 13 PO4 PO4 . Q 2 PO4 B 1 505 21 PO4 PO4 . R 3 AKG B 1 506 29 AKG AKG . S 4 NAD B 1 507 35 NAD NAD . T 4 NAD B 1 508 40 NAD NAD . U 2 PO4 C 1 502 3 PO4 PO4 . V 2 PO4 C 1 503 10 PO4 PO4 . W 2 PO4 C 1 504 18 PO4 PO4 . X 2 PO4 C 1 505 20 PO4 PO4 . Y 3 AKG C 1 506 27 AKG AKG . Z 4 NAD C 1 507 36 NAD NAD . AA 4 NAD C 1 508 37 NAD NAD . BA 2 PO4 D 1 502 2 PO4 PO4 . CA 2 PO4 D 1 503 9 PO4 PO4 . DA 2 PO4 D 1 504 19 PO4 PO4 . EA 2 PO4 D 1 505 24 PO4 PO4 . FA 3 AKG D 1 506 26 AKG AKG . GA 4 NAD D 1 507 31 NAD NAD . HA 4 NAD D 1 508 41 NAD NAD . IA 2 PO4 E 1 502 1 PO4 PO4 . JA 2 PO4 E 1 503 8 PO4 PO4 . KA 2 PO4 E 1 504 12 PO4 PO4 . LA 2 PO4 E 1 505 23 PO4 PO4 . MA 3 AKG E 1 506 28 AKG AKG . NA 4 NAD E 1 507 34 NAD NAD . OA 4 NAD E 1 508 42 NAD NAD . PA 2 PO4 F 1 502 5 PO4 PO4 . QA 2 PO4 F 1 503 6 PO4 PO4 . RA 2 PO4 F 1 504 7 PO4 PO4 . SA 2 PO4 F 1 505 22 PO4 PO4 . TA 3 AKG F 1 506 25 AKG AKG . UA 4 NAD F 1 507 33 NAD NAD . VA 4 NAD F 1 508 39 NAD NAD . WA 5 HOH A 1 509 43 HOH HOH . WA 5 HOH A 2 510 44 HOH HOH . WA 5 HOH A 3 511 45 HOH HOH . WA 5 HOH A 4 512 46 HOH HOH . WA 5 HOH A 5 513 77 HOH HOH . WA 5 HOH A 6 514 78 HOH HOH . XA 5 HOH B 1 509 47 HOH HOH . XA 5 HOH B 2 510 48 HOH HOH . XA 5 HOH B 3 511 49 HOH HOH . XA 5 HOH B 4 512 50 HOH HOH . XA 5 HOH B 5 513 51 HOH HOH . XA 5 HOH B 6 514 52 HOH HOH . YA 5 HOH C 1 509 55 HOH HOH . YA 5 HOH C 2 510 56 HOH HOH . YA 5 HOH C 3 511 57 HOH HOH . YA 5 HOH C 4 512 58 HOH HOH . YA 5 HOH C 5 513 65 HOH HOH . YA 5 HOH C 6 514 66 HOH HOH . ZA 5 HOH D 1 509 61 HOH HOH . ZA 5 HOH D 2 510 62 HOH HOH . ZA 5 HOH D 3 511 63 HOH HOH . ZA 5 HOH D 4 512 64 HOH HOH . ZA 5 HOH D 5 513 71 HOH HOH . ZA 5 HOH D 6 514 72 HOH HOH . AB 5 HOH E 1 509 59 HOH HOH . AB 5 HOH E 2 510 60 HOH HOH . AB 5 HOH E 3 511 67 HOH HOH . AB 5 HOH E 4 512 68 HOH HOH . AB 5 HOH E 5 513 69 HOH HOH . AB 5 HOH E 6 514 70 HOH HOH . BB 5 HOH F 1 509 53 HOH HOH . BB 5 HOH F 2 510 54 HOH HOH . BB 5 HOH F 3 511 73 HOH HOH . BB 5 HOH F 4 512 74 HOH HOH . BB 5 HOH F 5 513 75 HOH HOH . BB 5 HOH F 6 514 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . HA 4 -24.592 56.378 56.4 1 2.58 ? PA NAD 508 D 1 HETATM 2 O O1A NAD . . . HA 4 -22.972 55.906 56.494 1 15.41 ? O1A NAD 508 D 1 HETATM 3 O O2A NAD . . . HA 4 -25.081 57.502 55.401 1 2 ? O2A NAD 508 D 1 HETATM 4 O O5B NAD . . . HA 4 -25.035 56.574 57.787 1 6.26 ? O5B NAD 508 D 1 HETATM 5 C C5B NAD . . . HA 4 -24.57 57.568 58.628 1 10.23 ? C5B NAD 508 D 1 HETATM 6 C C4B NAD . . . HA 4 -25.702 58.601 58.79 1 9.27 ? C4B NAD 508 D 1 HETATM 7 O O4B NAD . . . HA 4 -26.004 58.645 60.229 1 8.12 ? O4B NAD 508 D 1 HETATM 8 C C3B NAD . . . HA 4 -25.218 60.07 58.453 1 4.56 ? C3B NAD 508 D 1 HETATM 9 O O3B NAD . . . HA 4 -26.318 60.922 57.982 1 2 ? O3B NAD 508 D 1 HETATM 10 C C2B NAD . . . HA 4 -24.583 60.579 59.717 1 4.25 ? C2B NAD 508 D 1 HETATM 11 O O2B NAD . . . HA 4 -24.445 61.983 59.873 1 8.07 ? O2B NAD 508 D 1 HETATM 12 C C1B NAD . . . HA 4 -25.631 60.007 60.682 1 8.15 ? C1B NAD 508 D 1 HETATM 13 N N9A NAD . . . HA 4 -25.172 59.679 62.024 1 11.96 ? N9A NAD 508 D 1 HETATM 14 C C8A NAD . . . HA 4 -24.068 58.937 62.424 1 15.81 ? C8A NAD 508 D 1 HETATM 15 N N7A NAD . . . HA 4 -23.971 58.787 63.739 1 13.04 ? N7A NAD 508 D 1 HETATM 16 C C5A NAD . . . HA 4 -25.061 59.491 64.208 1 7.73 ? C5A NAD 508 D 1 HETATM 17 C C6A NAD . . . HA 4 -25.528 59.699 65.513 1 13.4 ? C6A NAD 508 D 1 HETATM 18 N N6A NAD . . . HA 4 -24.909 59.177 66.559 1 19.97 ? N6A NAD 508 D 1 HETATM 19 N N1A NAD . . . HA 4 -26.651 60.448 65.602 1 9.18 ? N1A NAD 508 D 1 HETATM 20 C C2A NAD . . . HA 4 -27.365 60.993 64.65 1 3.2 ? C2A NAD 508 D 1 HETATM 21 N N3A NAD . . . HA 4 -26.996 60.842 63.339 1 2 ? N3A NAD 508 D 1 HETATM 22 C C4A NAD . . . HA 4 -25.807 60.052 63.193 1 7.57 ? C4A NAD 508 D 1 HETATM 23 O O3 NAD . . . HA 4 -25.497 55.162 56.276 1 7.95 ? O3 NAD 508 D 1 HETATM 24 P PN NAD . . . HA 4 -25.488 53.567 56.724 1 7.89 ? PN NAD 508 D 1 HETATM 25 O O1N NAD . . . HA 4 -24.267 53.292 57.45 1 6.84 ? O1N NAD 508 D 1 HETATM 26 O O2N NAD . . . HA 4 -25.989 52.716 55.599 1 19.58 ? O2N NAD 508 D 1 HETATM 27 O O5D NAD . . . HA 4 -26.604 53.423 57.864 1 2 ? O5D NAD 508 D 1 HETATM 28 C C5D NAD . . . HA 4 -26.056 53.498 59.242 1 2 ? C5D NAD 508 D 1 HETATM 29 C C4D NAD . . . HA 4 -26.391 52.217 59.985 1 2 ? C4D NAD 508 D 1 HETATM 30 O O4D NAD . . . HA 4 -27.085 51.3 59.114 1 12.37 ? O4D NAD 508 D 1 HETATM 31 C C3D NAD . . . HA 4 -25.314 51.436 60.61 1 2 ? C3D NAD 508 D 1 HETATM 32 O O3D NAD . . . HA 4 -25.844 50.896 61.86 1 2 ? O3D NAD 508 D 1 HETATM 33 C C2D NAD . . . HA 4 -25.043 50.267 59.677 1 4.3 ? C2D NAD 508 D 1 HETATM 34 O O2D NAD . . . HA 4 -24.478 49.095 60.318 1 3.45 ? O2D NAD 508 D 1 HETATM 35 C C1D NAD . . . HA 4 -26.491 50.013 59.284 1 13.13 ? C1D NAD 508 D 1 HETATM 36 N N1N NAD . . . HA 4 -26.651 49.151 58.005 1 16.75 ? N1N NAD 508 D 1 HETATM 37 C C2N NAD . . . HA 4 -26.341 49.655 56.728 1 9.83 ? C2N NAD 508 D 1 HETATM 38 C C3N NAD . . . HA 4 -26.465 48.848 55.679 1 2.03 ? C3N NAD 508 D 1 HETATM 39 C C7N NAD . . . HA 4 -26.155 49.395 54.262 1 2 ? C7N NAD 508 D 1 HETATM 40 O O7N NAD . . . HA 4 -26.292 48.625 53.333 1 19.7 ? O7N NAD 508 D 1 HETATM 41 N N7N NAD . . . HA 4 -25.738 50.715 54.165 1 5.32 ? N7N NAD 508 D 1 HETATM 42 C C4N NAD . . . HA 4 -26.892 47.506 55.789 1 2 ? C4N NAD 508 D 1 HETATM 43 C C5N NAD . . . HA 4 -27.193 47.052 57.113 1 8.85 ? C5N NAD 508 D 1 HETATM 44 C C6N NAD . . . HA 4 -27.087 47.819 58.264 1 10.19 ? C6N NAD 508 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #