data_1HX9 # _model_server_result.job_id oAyxDQZjPvjatlGGINWruQ _model_server_result.datetime_utc '2024-11-05 11:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 1HX9 # _exptl.entry_id 1HX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.346 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-HYDROXY-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENE PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HX9 _cell.length_a 125.82 _cell.length_b 125.82 _cell.length_c 122.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 301 A ASP 301 1_555 C MG MG . A MG 758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A OD1 ASP 305 A ASP 305 1_555 C MG MG . A MG 758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD2 ASP 444 A ASP 444 1_555 B MG MG . A MG 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A OG1 THR 448 A THR 448 1_555 B MG MG . A MG 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 A OE2 GLU 452 A GLU 452 1_555 B MG MG . A MG 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 B MG MG . A MG 757 1_555 D O2A FHP . A FHP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? # _chem_comp.formula 'C15 H27 O4 P' _chem_comp.formula_weight 302.346 _chem_comp.id FHP _chem_comp.mon_nstd_flag . _chem_comp.name '1-HYDROXY-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENE PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FARNESYL HYDROXYPHOSPHONATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FHP sing 83 n n C1 O1 FHP sing 84 n n C1 PA FHP sing 85 n n C1 H1 FHP sing 86 n n C2 C3 FHP doub 87 e n C2 H2 FHP sing 88 n n C3 C4 FHP sing 89 n n C3 C15 FHP sing 90 n n C4 C5 FHP sing 91 n n C4 H41 FHP sing 92 n n C4 H42 FHP sing 93 n n C5 C6 FHP sing 94 n n C5 H51 FHP sing 95 n n C5 H52 FHP sing 96 n n C6 C7 FHP doub 97 e n C6 H6 FHP sing 98 n n C7 C8 FHP sing 99 n n C7 C14 FHP sing 100 n n C8 C9 FHP sing 101 n n C8 H81 FHP sing 102 n n C8 H82 FHP sing 103 n n C9 C10 FHP sing 104 n n C9 H91 FHP sing 105 n n C9 H92 FHP sing 106 n n C10 C11 FHP doub 107 n n C10 H10 FHP sing 108 n n C11 C12 FHP sing 109 n n C11 C13 FHP sing 110 n n C12 H121 FHP sing 111 n n C12 H122 FHP sing 112 n n C12 H123 FHP sing 113 n n C13 H131 FHP sing 114 n n C13 H132 FHP sing 115 n n C13 H133 FHP sing 116 n n C14 H141 FHP sing 117 n n C14 H142 FHP sing 118 n n C14 H143 FHP sing 119 n n C15 H151 FHP sing 120 n n C15 H152 FHP sing 121 n n C15 H153 FHP sing 122 n n O1 HO1 FHP sing 123 n n O1A PA FHP doub 124 n n O2A PA FHP sing 125 n n O2A HOA2 FHP sing 126 n n O3A PA FHP sing 127 n n O3A HOA3 FHP sing 128 n n # _atom_sites.entry_id 1HX9 _atom_sites.fract_transf_matrix[1][1] 0.007948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 757 757 MG MG . C 2 MG A 1 758 758 MG MG . D 3 FHP A 1 900 900 FHP HPH . E 4 HOH A 1 601 601 HOH HOH . E 4 HOH A 2 602 602 HOH HOH . E 4 HOH A 3 603 603 HOH HOH . E 4 HOH A 4 604 604 HOH HOH . E 4 HOH A 5 605 605 HOH HOH . E 4 HOH A 6 606 606 HOH HOH . E 4 HOH A 7 607 607 HOH HOH . E 4 HOH A 8 608 608 HOH HOH . E 4 HOH A 9 609 609 HOH HOH . E 4 HOH A 10 610 610 HOH HOH . E 4 HOH A 11 611 611 HOH HOH . E 4 HOH A 12 612 612 HOH HOH . E 4 HOH A 13 613 613 HOH HOH . E 4 HOH A 14 614 614 HOH HOH . E 4 HOH A 15 615 615 HOH HOH . E 4 HOH A 16 616 616 HOH HOH . E 4 HOH A 17 617 617 HOH HOH . E 4 HOH A 18 618 618 HOH HOH . E 4 HOH A 19 619 619 HOH HOH . E 4 HOH A 20 620 620 HOH HOH . E 4 HOH A 21 621 621 HOH HOH . E 4 HOH A 22 622 622 HOH HOH . E 4 HOH A 23 623 623 HOH HOH . E 4 HOH A 24 624 624 HOH HOH . E 4 HOH A 25 625 625 HOH HOH . E 4 HOH A 26 626 626 HOH HOH . E 4 HOH A 27 627 627 HOH HOH . E 4 HOH A 28 628 628 HOH HOH . E 4 HOH A 29 629 629 HOH HOH . E 4 HOH A 30 630 630 HOH HOH . E 4 HOH A 31 631 631 HOH HOH . E 4 HOH A 32 632 632 HOH HOH . E 4 HOH A 33 633 633 HOH HOH . E 4 HOH A 34 634 634 HOH HOH . E 4 HOH A 35 635 635 HOH HOH . E 4 HOH A 36 636 636 HOH HOH . E 4 HOH A 37 637 637 HOH HOH . E 4 HOH A 38 638 638 HOH HOH . E 4 HOH A 39 639 639 HOH HOH . E 4 HOH A 40 640 640 HOH HOH . E 4 HOH A 41 641 641 HOH HOH . E 4 HOH A 42 642 642 HOH HOH . E 4 HOH A 43 643 643 HOH HOH . E 4 HOH A 44 644 644 HOH HOH . E 4 HOH A 45 645 645 HOH HOH . E 4 HOH A 46 646 646 HOH HOH . E 4 HOH A 47 647 647 HOH HOH . E 4 HOH A 48 648 648 HOH HOH . E 4 HOH A 49 649 649 HOH HOH . E 4 HOH A 50 650 650 HOH HOH . E 4 HOH A 51 651 651 HOH HOH . E 4 HOH A 52 652 652 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FHP . . . D 3 108.026 41.129 50.683 0.79 69.44 ? C1 FHP 900 A 1 HETATM 2 C C2 FHP . . . D 3 108.424 42.289 49.728 0.79 67.62 ? C2 FHP 900 A 1 HETATM 3 C C3 FHP . . . D 3 109.14 42.04 48.612 0.79 67.67 ? C3 FHP 900 A 1 HETATM 4 C C4 FHP . . . D 3 109.414 43.151 47.612 0.79 62.54 ? C4 FHP 900 A 1 HETATM 5 C C5 FHP . . . D 3 110.216 42.83 46.313 0.79 57.46 ? C5 FHP 900 A 1 HETATM 6 C C6 FHP . . . D 3 111.375 41.831 46.501 0.79 55.37 ? C6 FHP 900 A 1 HETATM 7 C C7 FHP . . . D 3 111.791 41.006 45.492 0.79 55.73 ? C7 FHP 900 A 1 HETATM 8 C C8 FHP . . . D 3 112.945 40.043 45.773 0.79 55.09 ? C8 FHP 900 A 1 HETATM 9 C C9 FHP . . . D 3 113.173 38.524 45.978 0.79 56.79 ? C9 FHP 900 A 1 HETATM 10 C C10 FHP . . . D 3 113.168 37.998 47.422 0.79 59.89 ? C10 FHP 900 A 1 HETATM 11 C C11 FHP . . . D 3 113.566 36.741 47.679 0.79 60.3 ? C11 FHP 900 A 1 HETATM 12 C C12 FHP . . . D 3 113.554 36.249 49.063 0.79 60.36 ? C12 FHP 900 A 1 HETATM 13 C C13 FHP . . . D 3 114.314 35.975 46.64 0.79 59.35 ? C13 FHP 900 A 1 HETATM 14 C C14 FHP . . . D 3 111.55 41.428 44.078 0.79 54.38 ? C14 FHP 900 A 1 HETATM 15 C C15 FHP . . . D 3 109.485 40.617 48.261 0.79 65.98 ? C15 FHP 900 A 1 HETATM 16 O O1 FHP . . . D 3 109.087 40.268 51.064 0.79 72.15 ? O1 FHP 900 A 1 HETATM 17 O O1A FHP . . . D 3 106.679 39.974 48.945 0.79 73.69 ? O1A FHP 900 A 1 HETATM 18 O O2A FHP . . . D 3 106.683 39.219 51.325 0.79 73.57 ? O2A FHP 900 A 1 HETATM 19 O O3A FHP . . . D 3 105.259 41.15 50.603 0.79 71.95 ? O3A FHP 900 A 1 HETATM 20 P PA FHP . . . D 3 106.445 40.304 50.354 0.79 73.78 ? PA FHP 900 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #