data_1HYB # _model_server_result.job_id vKI6KjW9jEvgWpUPIAZX9Q _model_server_result.datetime_utc '2025-02-27 01:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1340}' # _entry.id 1HYB # _exptl.entry_id 1HYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.227 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HYB _cell.length_a 89.778 _cell.length_b 89.778 _cell.length_c 108.946 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 89.778 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 44.889 77.750029 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.889 77.750029 54.473 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 89.778 0 54.473 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 54.473 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N2 O8 P 1' _chem_comp.formula_weight 335.227 _chem_comp.id NMN _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NICOTINAMIDE MONONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NMN doub 237 n n P O1P NMN sing 238 n n P O2P NMN sing 239 n n P O5R NMN sing 240 n n O1P H1PO NMN sing 241 n n O2P H2PO NMN sing 242 n n O5R C5R NMN sing 243 n n C5R C4R NMN sing 244 n n C5R H5R1 NMN sing 245 n n C5R H5R2 NMN sing 246 n n C4R O4R NMN sing 247 n n C4R C3R NMN sing 248 n n C4R H4RC NMN sing 249 n n O4R C1R NMN sing 250 n n C3R O3R NMN sing 251 n n C3R C2R NMN sing 252 n n C3R H3RC NMN sing 253 n n O3R H3RO NMN sing 254 n n C2R O2R NMN sing 255 n n C2R C1R NMN sing 256 n n C2R H2RC NMN sing 257 n n O2R H2RO NMN sing 258 n n C1R N1 NMN sing 259 n n C1R H1RC NMN sing 260 n n N1 C2 NMN doub 261 n y N1 C6 NMN sing 262 n y C2 C3 NMN sing 263 n y C2 HC2 NMN sing 264 n n C3 C7 NMN sing 265 n n C3 C4 NMN doub 266 n y C7 O7 NMN doub 267 n n C7 N7 NMN sing 268 n n N7 HN71 NMN sing 269 n n N7 HN72 NMN sing 270 n n C4 C5 NMN sing 271 n y C4 HC4 NMN sing 272 n n C5 C6 NMN doub 273 n y C5 HC5 NMN sing 274 n n C6 HC6 NMN sing 275 n n # _atom_sites.entry_id 1HYB _atom_sites.fract_transf_matrix[1][1] 0.011139 _atom_sites.fract_transf_matrix[1][2] 0.006431 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1759 1759 SO4 SO4 . C 3 NMN A 1 1340 1340 NMN NMN . D 4 HOH A 1 2000 2000 HOH TIP . D 4 HOH A 2 2001 2001 HOH TIP . D 4 HOH A 3 2002 2002 HOH TIP . D 4 HOH A 4 2003 2003 HOH TIP . D 4 HOH A 5 2004 2004 HOH TIP . D 4 HOH A 6 2005 2005 HOH TIP . D 4 HOH A 7 2006 2006 HOH TIP . D 4 HOH A 8 2007 2007 HOH TIP . D 4 HOH A 9 2008 2008 HOH TIP . D 4 HOH A 10 2009 2009 HOH TIP . D 4 HOH A 11 2010 2010 HOH TIP . D 4 HOH A 12 2011 2011 HOH TIP . D 4 HOH A 13 2012 2012 HOH TIP . D 4 HOH A 14 2013 2013 HOH TIP . D 4 HOH A 15 2014 2014 HOH TIP . D 4 HOH A 16 2015 2015 HOH TIP . D 4 HOH A 17 2016 2016 HOH TIP . D 4 HOH A 18 2017 2017 HOH TIP . D 4 HOH A 19 2018 2018 HOH TIP . D 4 HOH A 20 2019 2019 HOH TIP . D 4 HOH A 21 2020 2020 HOH TIP . D 4 HOH A 22 2021 2021 HOH TIP . D 4 HOH A 23 2022 2022 HOH TIP . D 4 HOH A 24 2023 2023 HOH TIP . D 4 HOH A 25 2024 2024 HOH TIP . D 4 HOH A 26 2025 2025 HOH TIP . D 4 HOH A 27 2026 2026 HOH TIP . D 4 HOH A 28 2027 2027 HOH TIP . D 4 HOH A 29 2028 2028 HOH TIP . D 4 HOH A 30 2029 2029 HOH TIP . D 4 HOH A 31 2030 2030 HOH TIP . D 4 HOH A 32 2031 2031 HOH TIP . D 4 HOH A 33 2032 2032 HOH TIP . D 4 HOH A 34 2033 2033 HOH TIP . D 4 HOH A 35 2034 2034 HOH TIP . D 4 HOH A 36 2035 2035 HOH TIP . D 4 HOH A 37 2037 2037 HOH TIP . D 4 HOH A 38 2039 2039 HOH TIP . D 4 HOH A 39 2040 2040 HOH TIP . D 4 HOH A 40 2041 2041 HOH TIP . D 4 HOH A 41 2042 2042 HOH TIP . D 4 HOH A 42 2043 2043 HOH TIP . D 4 HOH A 43 2044 2044 HOH TIP . D 4 HOH A 44 2045 2045 HOH TIP . D 4 HOH A 45 2046 2046 HOH TIP . D 4 HOH A 46 2047 2047 HOH TIP . D 4 HOH A 47 2048 2048 HOH TIP . D 4 HOH A 48 2049 2049 HOH TIP . D 4 HOH A 49 2050 2050 HOH TIP . D 4 HOH A 50 2051 2051 HOH TIP . D 4 HOH A 51 2052 2052 HOH TIP . D 4 HOH A 52 2053 2053 HOH TIP . D 4 HOH A 53 2054 2054 HOH TIP . D 4 HOH A 54 2055 2055 HOH TIP . D 4 HOH A 55 2056 2056 HOH TIP . D 4 HOH A 56 2057 2057 HOH TIP . D 4 HOH A 57 2058 2058 HOH TIP . D 4 HOH A 58 2059 2059 HOH TIP . D 4 HOH A 59 2062 2062 HOH TIP . D 4 HOH A 60 2063 2063 HOH TIP . D 4 HOH A 61 2064 2064 HOH TIP . D 4 HOH A 62 2065 2065 HOH TIP . D 4 HOH A 63 2066 2066 HOH TIP . D 4 HOH A 64 2069 2069 HOH TIP . D 4 HOH A 65 2070 2070 HOH TIP . D 4 HOH A 66 2074 2074 HOH TIP . D 4 HOH A 67 2075 2075 HOH TIP . D 4 HOH A 68 2076 2076 HOH TIP . D 4 HOH A 69 2077 2077 HOH TIP . D 4 HOH A 70 2078 2078 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NMN . . . C 3 29.849 22.052 43.664 1 46.29 ? O3P NMN 1340 A 1 HETATM 2 P P NMN . . . C 3 28.564 21.903 42.909 1 45 ? P NMN 1340 A 1 HETATM 3 O O1P NMN . . . C 3 28.14 20.503 43.107 1 45.81 ? O1P NMN 1340 A 1 HETATM 4 O O2P NMN . . . C 3 27.606 22.943 43.376 1 46.59 ? O2P NMN 1340 A 1 HETATM 5 O O5R NMN . . . C 3 29.183 22.081 41.49 1 45.04 ? O5R NMN 1340 A 1 HETATM 6 C C5R NMN . . . C 3 28.864 23.194 40.668 1 41.22 ? C5R NMN 1340 A 1 HETATM 7 C C4R NMN . . . C 3 29.696 22.965 39.425 1 39.48 ? C4R NMN 1340 A 1 HETATM 8 O O4R NMN . . . C 3 29.748 24.242 38.714 1 39.52 ? O4R NMN 1340 A 1 HETATM 9 C C3R NMN . . . C 3 31.171 22.582 39.669 1 38.55 ? C3R NMN 1340 A 1 HETATM 10 O O3R NMN . . . C 3 31.591 21.554 38.75 1 38.48 ? O3R NMN 1340 A 1 HETATM 11 C C2R NMN . . . C 3 31.89 23.892 39.406 1 38.26 ? C2R NMN 1340 A 1 HETATM 12 O O2R NMN . . . C 3 33.257 23.65 39.038 1 38.03 ? O2R NMN 1340 A 1 HETATM 13 C C1R NMN . . . C 3 31.066 24.434 38.277 1 37.07 ? C1R NMN 1340 A 1 HETATM 14 N N1 NMN . . . C 3 31.356 25.836 38.033 1 35.95 ? N1 NMN 1340 A 1 HETATM 15 C C2 NMN . . . C 3 32.323 26.178 37.09 1 33.43 ? C2 NMN 1340 A 1 HETATM 16 C C3 NMN . . . C 3 32.803 27.565 36.948 1 32.52 ? C3 NMN 1340 A 1 HETATM 17 C C7 NMN . . . C 3 33.93 27.772 36.017 1 31.31 ? C7 NMN 1340 A 1 HETATM 18 O O7 NMN . . . C 3 34.377 28.939 35.909 1 31.84 ? O7 NMN 1340 A 1 HETATM 19 N N7 NMN . . . C 3 34.467 26.773 35.3 1 27.48 ? N7 NMN 1340 A 1 HETATM 20 C C4 NMN . . . C 3 32.036 28.67 37.634 1 31.79 ? C4 NMN 1340 A 1 HETATM 21 C C5 NMN . . . C 3 30.962 28.146 38.541 1 34.75 ? C5 NMN 1340 A 1 HETATM 22 C C6 NMN . . . C 3 30.674 26.871 38.738 1 34.78 ? C6 NMN 1340 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #