data_1HYE # _model_server_result.job_id PsqNoazFuSv7O72cb_dzaw _model_server_result.datetime_utc '2025-04-15 04:42:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":748}' # _entry.id 1HYE # _exptl.entry_id 1HYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HYE _cell.length_a 47.647 _cell.length_b 125.101 _cell.length_c 58.082 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1HYE _atom_sites.fract_transf_matrix[1][1] 0.020988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 748 748 NAP NAP . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1037 1037 HOH HOH . C 3 HOH A 37 1038 1038 HOH HOH . C 3 HOH A 38 1039 1039 HOH HOH . C 3 HOH A 39 1040 1040 HOH HOH . C 3 HOH A 40 1041 1041 HOH HOH . C 3 HOH A 41 1042 1042 HOH HOH . C 3 HOH A 42 1043 1043 HOH HOH . C 3 HOH A 43 1044 1044 HOH HOH . C 3 HOH A 44 1045 1045 HOH HOH . C 3 HOH A 45 1046 1046 HOH HOH . C 3 HOH A 46 1047 1047 HOH HOH . C 3 HOH A 47 1048 1048 HOH HOH . C 3 HOH A 48 1049 1049 HOH HOH . C 3 HOH A 49 1050 1050 HOH HOH . C 3 HOH A 50 1051 1051 HOH HOH . C 3 HOH A 51 1052 1052 HOH HOH . C 3 HOH A 52 1053 1053 HOH HOH . C 3 HOH A 53 1054 1054 HOH HOH . C 3 HOH A 54 1055 1055 HOH HOH . C 3 HOH A 55 1056 1056 HOH HOH . C 3 HOH A 56 1057 1057 HOH HOH . C 3 HOH A 57 1058 1058 HOH HOH . C 3 HOH A 58 1059 1059 HOH HOH . C 3 HOH A 59 1060 1060 HOH HOH . C 3 HOH A 60 1061 1061 HOH HOH . C 3 HOH A 61 1062 1062 HOH HOH . C 3 HOH A 62 1063 1063 HOH HOH . C 3 HOH A 63 1064 1064 HOH HOH . C 3 HOH A 64 1065 1065 HOH HOH . C 3 HOH A 65 1066 1066 HOH HOH . C 3 HOH A 66 1067 1067 HOH HOH . C 3 HOH A 67 1068 1068 HOH HOH . C 3 HOH A 68 1069 1069 HOH HOH . C 3 HOH A 69 1070 1070 HOH HOH . C 3 HOH A 70 1071 1071 HOH HOH . C 3 HOH A 71 1072 1072 HOH HOH . C 3 HOH A 72 1073 1073 HOH HOH . C 3 HOH A 73 1074 1074 HOH HOH . C 3 HOH A 74 1075 1075 HOH HOH . C 3 HOH A 75 1076 1076 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 4.359 31.493 22.977 1 28.13 ? PA NAP 748 A 1 HETATM 2 O O1A NAP . . . B 2 3.345 32.569 23.379 1 47.68 ? O1A NAP 748 A 1 HETATM 3 O O2A NAP . . . B 2 4.119 30.424 23.863 1 32.12 ? O2A NAP 748 A 1 HETATM 4 O O5B NAP . . . B 2 5.873 31.874 23.401 1 34.63 ? O5B NAP 748 A 1 HETATM 5 C C5B NAP . . . B 2 7.034 31.138 23.024 1 32.63 ? C5B NAP 748 A 1 HETATM 6 C C4B NAP . . . B 2 7.99 31.696 23.912 1 32.32 ? C4B NAP 748 A 1 HETATM 7 O O4B NAP . . . B 2 8.825 32.287 22.848 1 32.82 ? O4B NAP 748 A 1 HETATM 8 C C3B NAP . . . B 2 8.96 32.105 24.953 1 32.66 ? C3B NAP 748 A 1 HETATM 9 O O3B NAP . . . B 2 9.845 30.85 25.159 1 30.96 ? O3B NAP 748 A 1 HETATM 10 C C2B NAP . . . B 2 9.712 33.2 24.599 1 28.15 ? C2B NAP 748 A 1 HETATM 11 O O2B NAP . . . B 2 10.716 33.646 25.393 1 36.65 ? O2B NAP 748 A 1 HETATM 12 C C1B NAP . . . B 2 10.139 32.788 23.267 1 27.56 ? C1B NAP 748 A 1 HETATM 13 N N9A NAP . . . B 2 10.531 34.069 22.438 1 26.65 ? N9A NAP 748 A 1 HETATM 14 C C8A NAP . . . B 2 9.745 35.007 21.861 1 25.42 ? C8A NAP 748 A 1 HETATM 15 N N7A NAP . . . B 2 10.405 35.945 21.31 1 27.56 ? N7A NAP 748 A 1 HETATM 16 C C5A NAP . . . B 2 11.736 35.655 21.543 1 25.1 ? C5A NAP 748 A 1 HETATM 17 C C6A NAP . . . B 2 12.979 36.3 21.188 1 23.25 ? C6A NAP 748 A 1 HETATM 18 N N6A NAP . . . B 2 13.034 37.442 20.504 1 28.32 ? N6A NAP 748 A 1 HETATM 19 N N1A NAP . . . B 2 14.15 35.713 21.568 1 25.58 ? N1A NAP 748 A 1 HETATM 20 C C2A NAP . . . B 2 14.143 34.545 22.272 1 25.94 ? C2A NAP 748 A 1 HETATM 21 N N3A NAP . . . B 2 13.024 33.885 22.659 1 26.13 ? N3A NAP 748 A 1 HETATM 22 C C4A NAP . . . B 2 11.855 34.5 22.211 1 19.82 ? C4A NAP 748 A 1 HETATM 23 O O3 NAP . . . B 2 4.273 30.768 21.591 1 27.57 ? O3 NAP 748 A 1 HETATM 24 P PN NAP . . . B 2 4.033 29.167 21.265 1 25.41 ? PN NAP 748 A 1 HETATM 25 O O1N NAP . . . B 2 2.585 28.946 21.112 1 28.39 ? O1N NAP 748 A 1 HETATM 26 O O2N NAP . . . B 2 4.694 28.355 22.354 1 21.8 ? O2N NAP 748 A 1 HETATM 27 O O5D NAP . . . B 2 4.843 28.736 19.967 1 25.46 ? O5D NAP 748 A 1 HETATM 28 C C5D NAP . . . B 2 6.264 28.906 19.886 1 24.79 ? C5D NAP 748 A 1 HETATM 29 C C4D NAP . . . B 2 6.804 28.784 18.446 1 24.08 ? C4D NAP 748 A 1 HETATM 30 O O4D NAP . . . B 2 6.66 27.457 17.962 1 26.37 ? O4D NAP 748 A 1 HETATM 31 C C3D NAP . . . B 2 6.106 29.667 17.39 1 22.11 ? C3D NAP 748 A 1 HETATM 32 O O3D NAP . . . B 2 6.977 30.138 16.348 1 25.69 ? O3D NAP 748 A 1 HETATM 33 C C2D NAP . . . B 2 5.018 28.802 16.822 1 22.82 ? C2D NAP 748 A 1 HETATM 34 O O2D NAP . . . B 2 4.66 29.099 15.505 1 25.08 ? O2D NAP 748 A 1 HETATM 35 C C1D NAP . . . B 2 5.666 27.398 16.928 1 25.06 ? C1D NAP 748 A 1 HETATM 36 N N1N NAP . . . B 2 4.687 26.331 17.127 1 22.6 ? N1N NAP 748 A 1 HETATM 37 C C2N NAP . . . B 2 4.768 25.297 16.17 1 21.72 ? C2N NAP 748 A 1 HETATM 38 C C3N NAP . . . B 2 3.829 24.207 16.289 1 27.55 ? C3N NAP 748 A 1 HETATM 39 C C7N NAP . . . B 2 3.848 23.08 15.337 1 30.84 ? C7N NAP 748 A 1 HETATM 40 O O7N NAP . . . B 2 3.056 22.136 15.412 1 30.86 ? O7N NAP 748 A 1 HETATM 41 N N7N NAP . . . B 2 4.744 23.047 14.338 1 27.61 ? N7N NAP 748 A 1 HETATM 42 C C4N NAP . . . B 2 2.888 24.246 17.35 1 28.78 ? C4N NAP 748 A 1 HETATM 43 C C5N NAP . . . B 2 2.821 25.264 18.263 1 29.56 ? C5N NAP 748 A 1 HETATM 44 C C6N NAP . . . B 2 3.717 26.308 18.161 1 26.3 ? C6N NAP 748 A 1 HETATM 45 P P2B NAP . . . B 2 10.381 34.601 26.661 1 38.64 ? P2B NAP 748 A 1 HETATM 46 O O1X NAP . . . B 2 9.243 34.121 27.383 1 42.94 ? O1X NAP 748 A 1 HETATM 47 O O2X NAP . . . B 2 11.703 34.467 27.215 1 53.92 ? O2X NAP 748 A 1 HETATM 48 O O3X NAP . . . B 2 10.165 35.989 26.073 1 46.2 ? O3X NAP 748 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #