data_1HYG # _model_server_result.job_id 7zeNM-LBwTzbuU_zW_LRqg _model_server_result.datetime_utc '2024-12-26 20:43:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 1HYG # _exptl.entry_id 1HYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HYG _cell.length_a 98.213 _cell.length_b 98.213 _cell.length_c 167.233 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 98.213 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1HYG _atom_sites.fract_transf_matrix[1][1] 0.010182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 900 900 NAP NAP . D 2 NAP B 1 901 901 NAP NAP . E 3 HOH A 1 700 700 HOH HOH . E 3 HOH A 2 701 701 HOH HOH . E 3 HOH A 3 702 702 HOH HOH . E 3 HOH A 4 703 703 HOH HOH . E 3 HOH A 5 705 705 HOH HOH . E 3 HOH A 6 706 706 HOH HOH . E 3 HOH A 7 707 707 HOH HOH . E 3 HOH A 8 708 708 HOH HOH . E 3 HOH A 9 709 709 HOH HOH . E 3 HOH A 10 710 710 HOH HOH . E 3 HOH A 11 711 711 HOH HOH . E 3 HOH A 12 712 712 HOH HOH . E 3 HOH A 13 713 713 HOH HOH . E 3 HOH A 14 714 714 HOH HOH . E 3 HOH A 15 715 715 HOH HOH . E 3 HOH A 16 717 717 HOH HOH . E 3 HOH A 17 718 718 HOH HOH . E 3 HOH A 18 719 719 HOH HOH . E 3 HOH A 19 720 720 HOH HOH . E 3 HOH A 20 721 721 HOH HOH . E 3 HOH A 21 723 723 HOH HOH . E 3 HOH A 22 724 724 HOH HOH . E 3 HOH A 23 726 726 HOH HOH . E 3 HOH A 24 727 727 HOH HOH . E 3 HOH A 25 728 728 HOH HOH . E 3 HOH A 26 729 729 HOH HOH . E 3 HOH A 27 752 752 HOH HOH . E 3 HOH A 28 757 757 HOH HOH . E 3 HOH A 29 765 765 HOH HOH . E 3 HOH A 30 766 766 HOH HOH . E 3 HOH A 31 767 767 HOH HOH . E 3 HOH A 32 768 768 HOH HOH . E 3 HOH A 33 769 769 HOH HOH . E 3 HOH A 34 770 770 HOH HOH . E 3 HOH A 35 772 772 HOH HOH . E 3 HOH A 36 773 773 HOH HOH . E 3 HOH A 37 775 775 HOH HOH . E 3 HOH A 38 783 783 HOH HOH . E 3 HOH A 39 784 784 HOH HOH . E 3 HOH A 40 788 788 HOH HOH . E 3 HOH A 41 800 800 HOH HOH . E 3 HOH A 42 801 801 HOH HOH . E 3 HOH A 43 802 802 HOH HOH . E 3 HOH A 44 803 803 HOH HOH . E 3 HOH A 45 804 804 HOH HOH . E 3 HOH A 46 805 805 HOH HOH . E 3 HOH A 47 806 806 HOH HOH . E 3 HOH A 48 807 807 HOH HOH . E 3 HOH A 49 808 808 HOH HOH . E 3 HOH A 50 810 810 HOH HOH . E 3 HOH A 51 811 811 HOH HOH . E 3 HOH A 52 812 812 HOH HOH . E 3 HOH A 53 813 813 HOH HOH . E 3 HOH A 54 815 815 HOH HOH . E 3 HOH A 55 816 816 HOH HOH . E 3 HOH A 56 818 818 HOH HOH . E 3 HOH A 57 819 819 HOH HOH . E 3 HOH A 58 820 820 HOH HOH . E 3 HOH A 59 821 821 HOH HOH . E 3 HOH A 60 822 822 HOH HOH . E 3 HOH A 61 823 823 HOH HOH . E 3 HOH A 62 824 824 HOH HOH . E 3 HOH A 63 825 825 HOH HOH . E 3 HOH A 64 826 826 HOH HOH . E 3 HOH A 65 827 827 HOH HOH . E 3 HOH A 66 828 828 HOH HOH . E 3 HOH A 67 829 829 HOH HOH . E 3 HOH A 68 831 831 HOH HOH . E 3 HOH A 69 832 832 HOH HOH . E 3 HOH A 70 833 833 HOH HOH . E 3 HOH A 71 834 834 HOH HOH . E 3 HOH A 72 835 835 HOH HOH . E 3 HOH A 73 836 836 HOH HOH . E 3 HOH A 74 837 837 HOH HOH . E 3 HOH A 75 840 840 HOH HOH . F 3 HOH B 1 704 704 HOH HOH . F 3 HOH B 2 725 725 HOH HOH . F 3 HOH B 3 731 731 HOH HOH . F 3 HOH B 4 732 732 HOH HOH . F 3 HOH B 5 733 733 HOH HOH . F 3 HOH B 6 734 734 HOH HOH . F 3 HOH B 7 736 736 HOH HOH . F 3 HOH B 8 737 737 HOH HOH . F 3 HOH B 9 738 738 HOH HOH . F 3 HOH B 10 739 739 HOH HOH . F 3 HOH B 11 740 740 HOH HOH . F 3 HOH B 12 741 741 HOH HOH . F 3 HOH B 13 742 742 HOH HOH . F 3 HOH B 14 743 743 HOH HOH . F 3 HOH B 15 745 745 HOH HOH . F 3 HOH B 16 746 746 HOH HOH . F 3 HOH B 17 747 747 HOH HOH . F 3 HOH B 18 748 748 HOH HOH . F 3 HOH B 19 749 749 HOH HOH . F 3 HOH B 20 750 750 HOH HOH . F 3 HOH B 21 751 751 HOH HOH . F 3 HOH B 22 753 753 HOH HOH . F 3 HOH B 23 754 754 HOH HOH . F 3 HOH B 24 755 755 HOH HOH . F 3 HOH B 25 756 756 HOH HOH . F 3 HOH B 26 758 758 HOH HOH . F 3 HOH B 27 759 759 HOH HOH . F 3 HOH B 28 762 762 HOH HOH . F 3 HOH B 29 763 763 HOH HOH . F 3 HOH B 30 776 776 HOH HOH . F 3 HOH B 31 778 778 HOH HOH . F 3 HOH B 32 779 779 HOH HOH . F 3 HOH B 33 780 780 HOH HOH . F 3 HOH B 34 781 781 HOH HOH . F 3 HOH B 35 782 782 HOH HOH . F 3 HOH B 36 785 785 HOH HOH . F 3 HOH B 37 786 786 HOH HOH . F 3 HOH B 38 787 787 HOH HOH . F 3 HOH B 39 789 789 HOH HOH . F 3 HOH B 40 790 790 HOH HOH . F 3 HOH B 41 792 792 HOH HOH . F 3 HOH B 42 793 793 HOH HOH . F 3 HOH B 43 794 794 HOH HOH . F 3 HOH B 44 795 795 HOH HOH . F 3 HOH B 45 796 796 HOH HOH . F 3 HOH B 46 797 797 HOH HOH . F 3 HOH B 47 798 798 HOH HOH . F 3 HOH B 48 814 814 HOH HOH . F 3 HOH B 49 817 817 HOH HOH . F 3 HOH B 50 838 838 HOH HOH . F 3 HOH B 51 839 839 HOH HOH . F 3 HOH B 52 841 841 HOH HOH . F 3 HOH B 53 842 842 HOH HOH . F 3 HOH B 54 845 845 HOH HOH . F 3 HOH B 55 846 846 HOH HOH . F 3 HOH B 56 847 847 HOH HOH . F 3 HOH B 57 848 848 HOH HOH . F 3 HOH B 58 849 849 HOH HOH . F 3 HOH B 59 850 850 HOH HOH . F 3 HOH B 60 851 851 HOH HOH . F 3 HOH B 61 852 852 HOH HOH . F 3 HOH B 62 853 853 HOH HOH . F 3 HOH B 63 854 854 HOH HOH . F 3 HOH B 64 855 855 HOH HOH . F 3 HOH B 65 856 856 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 2 65.896 26.455 50.849 0.6 63.42 ? PA NAP 901 B 1 HETATM 2 O O1A NAP . . . D 2 66.089 26.175 52.31 0.6 59.83 ? O1A NAP 901 B 1 HETATM 3 O O2A NAP . . . D 2 66.986 27.055 50.088 0.6 58.68 ? O2A NAP 901 B 1 HETATM 4 O O5B NAP . . . D 2 64.526 27.327 50.738 0.6 52.98 ? O5B NAP 901 B 1 HETATM 5 C C5B NAP . . . D 2 64.09 27.794 49.461 0.6 37.71 ? C5B NAP 901 B 1 HETATM 6 C C4B NAP . . . D 2 62.786 28.534 49.605 0.6 34.93 ? C4B NAP 901 B 1 HETATM 7 O O4B NAP . . . D 2 62.936 29.654 50.512 0.6 31.65 ? O4B NAP 901 B 1 HETATM 8 C C3B NAP . . . D 2 62.316 29.073 48.309 0.6 29.32 ? C3B NAP 901 B 1 HETATM 9 O O3B NAP . . . D 2 60.895 29.093 48.2 0.6 35.74 ? O3B NAP 901 B 1 HETATM 10 C C2B NAP . . . D 2 62.824 30.483 48.366 0.6 32.66 ? C2B NAP 901 B 1 HETATM 11 O O2B NAP . . . D 2 62.155 31.41 47.498 0.6 29.61 ? O2B NAP 901 B 1 HETATM 12 C C1B NAP . . . D 2 62.539 30.843 49.808 0.6 26.74 ? C1B NAP 901 B 1 HETATM 13 N N9A NAP . . . D 2 63.321 32.014 50.335 0.6 32.72 ? N9A NAP 901 B 1 HETATM 14 C C8A NAP . . . D 2 64.692 32.126 50.602 0.6 34.87 ? C8A NAP 901 B 1 HETATM 15 N N7A NAP . . . D 2 65.03 33.314 51.054 0.6 38.51 ? N7A NAP 901 B 1 HETATM 16 C C5A NAP . . . D 2 63.842 34.035 51.095 0.6 36.3 ? C5A NAP 901 B 1 HETATM 17 C C6A NAP . . . D 2 63.53 35.381 51.488 0.6 34.59 ? C6A NAP 901 B 1 HETATM 18 N N6A NAP . . . D 2 64.467 36.225 51.922 0.6 15.57 ? N6A NAP 901 B 1 HETATM 19 N N1A NAP . . . D 2 62.212 35.793 51.406 0.6 32.5 ? N1A NAP 901 B 1 HETATM 20 C C2A NAP . . . D 2 61.25 34.938 50.964 0.6 25.63 ? C2A NAP 901 B 1 HETATM 21 N N3A NAP . . . D 2 61.454 33.661 50.575 0.6 19.82 ? N3A NAP 901 B 1 HETATM 22 C C4A NAP . . . D 2 62.786 33.265 50.664 0.6 32.58 ? C4A NAP 901 B 1 HETATM 23 O O3 NAP . . . D 2 65.326 25.06 50.179 0.6 55.55 ? O3 NAP 901 B 1 HETATM 24 P PN NAP . . . D 2 64.511 23.736 50.692 0.6 58.82 ? PN NAP 901 B 1 HETATM 25 O O1N NAP . . . D 2 65.231 22.582 50.143 0.6 57.64 ? O1N NAP 901 B 1 HETATM 26 O O2N NAP . . . D 2 63.067 23.951 50.249 0.6 49.95 ? O2N NAP 901 B 1 HETATM 27 O O5D NAP . . . D 2 64.434 23.763 52.298 0.6 43.46 ? O5D NAP 901 B 1 HETATM 28 C C5D NAP . . . D 2 64.1 22.569 53.068 0.6 45.67 ? C5D NAP 901 B 1 HETATM 29 C C4D NAP . . . D 2 62.77 22.757 53.832 0.6 42.25 ? C4D NAP 901 B 1 HETATM 30 O O4D NAP . . . D 2 62.428 21.555 54.543 0.6 47.39 ? O4D NAP 901 B 1 HETATM 31 C C3D NAP . . . D 2 62.832 23.872 54.886 0.6 33.55 ? C3D NAP 901 B 1 HETATM 32 O O3D NAP . . . D 2 61.694 24.742 54.89 0.6 35.72 ? O3D NAP 901 B 1 HETATM 33 C C2D NAP . . . D 2 63.048 23.171 56.218 0.6 31.72 ? C2D NAP 901 B 1 HETATM 34 O O2D NAP . . . D 2 62.386 23.794 57.287 0.6 30.83 ? O2D NAP 901 B 1 HETATM 35 C C1D NAP . . . D 2 62.527 21.722 55.958 0.6 37.45 ? C1D NAP 901 B 1 HETATM 36 N N1N NAP . . . D 2 63.429 20.603 56.606 0.6 39.32 ? N1N NAP 901 B 1 HETATM 37 C C2N NAP . . . D 2 62.747 19.739 57.414 0.6 23.33 ? C2N NAP 901 B 1 HETATM 38 C C3N NAP . . . D 2 63.552 18.746 58.082 0.6 16.66 ? C3N NAP 901 B 1 HETATM 39 C C7N NAP . . . D 2 62.946 17.718 58.93 0.6 13.69 ? C7N NAP 901 B 1 HETATM 40 O O7N NAP . . . D 2 63.62 16.866 59.511 0.6 12.99 ? O7N NAP 901 B 1 HETATM 41 N N7N NAP . . . D 2 61.614 17.663 59.114 0.6 18.84 ? N7N NAP 901 B 1 HETATM 42 C C4N NAP . . . D 2 64.958 18.776 57.9 0.6 31.07 ? C4N NAP 901 B 1 HETATM 43 C C5N NAP . . . D 2 65.601 19.702 57.125 0.6 37.82 ? C5N NAP 901 B 1 HETATM 44 C C6N NAP . . . D 2 64.846 20.669 56.472 0.6 36.34 ? C6N NAP 901 B 1 HETATM 45 P P2B NAP . . . D 2 62.846 31.897 46.138 0.6 36.11 ? P2B NAP 901 B 1 HETATM 46 O O1X NAP . . . D 2 63.338 30.723 45.357 0.6 45.76 ? O1X NAP 901 B 1 HETATM 47 O O2X NAP . . . D 2 61.696 32.6 45.55 0.6 31.36 ? O2X NAP 901 B 1 HETATM 48 O O3X NAP . . . D 2 63.917 32.805 46.616 0.6 31.21 ? O3X NAP 901 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #