data_1HZE # _model_server_result.job_id 895J1Xovy_DI773FEy0F2g _model_server_result.datetime_utc '2024-11-09 02:28:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":98}' # _entry.id 1HZE # _exptl.entry_id 1HZE _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 376.364 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.entry_id 1HZE _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RBF sing 275 n n N1 C10 RBF doub 276 n n C2 O2 RBF doub 277 n n C2 N3 RBF sing 278 n n N3 C4 RBF sing 279 n n N3 HN3 RBF sing 280 n n C4 O4 RBF doub 281 n n C4 C4A RBF sing 282 n n C4A N5 RBF doub 283 n n C4A C10 RBF sing 284 n n N5 C5A RBF sing 285 n n C5A C6 RBF doub 286 n y C5A C9A RBF sing 287 n y C6 C7 RBF sing 288 n y C6 HC6 RBF sing 289 n n C7 C7M RBF sing 290 n n C7 C8 RBF doub 291 n y C7M HC71 RBF sing 292 n n C7M HC72 RBF sing 293 n n C7M HC73 RBF sing 294 n n C8 C8M RBF sing 295 n n C8 C9 RBF sing 296 n y C8M HC81 RBF sing 297 n n C8M HC82 RBF sing 298 n n C8M HC83 RBF sing 299 n n C9 C9A RBF doub 300 n y C9 HC9 RBF sing 301 n n C9A N10 RBF sing 302 n n N10 C10 RBF sing 303 n n N10 C1' RBF sing 304 n n C1' C2' RBF sing 305 n n C1' HC11 RBF sing 306 n n C1' HC12 RBF sing 307 n n C2' O2' RBF sing 308 n n C2' C3' RBF sing 309 n n C2' HC2' RBF sing 310 n n O2' HO2' RBF sing 311 n n C3' O3' RBF sing 312 n n C3' C4' RBF sing 313 n n C3' HC3' RBF sing 314 n n O3' HO3' RBF sing 315 n n C4' O4' RBF sing 316 n n C4' C5' RBF sing 317 n n C4' HC4' RBF sing 318 n n O4' HO4' RBF sing 319 n n C5' O5' RBF sing 320 n n C5' HC51 RBF sing 321 n n C5' HC52 RBF sing 322 n n O5' HO5' RBF sing 323 n n # _atom_sites.entry_id 1HZE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RBF A 1 98 98 RBF RBF . D 2 RBF B 1 99 99 RBF RBF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . C 2 -7.112 -7.17 -8.456 1 0.52 ? N1 RBF 98 A 1 HETATM 2 C C2 RBF . . . C 2 -6.898 -6.854 -9.747 1 0.4 ? C2 RBF 98 A 1 HETATM 3 O O2 RBF . . . C 2 -7.941 -6.655 -10.568 1 0.53 ? O2 RBF 98 A 1 HETATM 4 N N3 RBF . . . C 2 -5.604 -6.738 -10.232 1 0.23 ? N3 RBF 98 A 1 HETATM 5 C C4 RBF . . . C 2 -4.528 -6.951 -9.384 1 0.24 ? C4 RBF 98 A 1 HETATM 6 O O4 RBF . . . C 2 -3.277 -6.84 -9.848 1 0.43 ? O4 RBF 98 A 1 HETATM 7 C C4A RBF . . . C 2 -4.76 -7.283 -8.043 1 0.24 ? C4A RBF 98 A 1 HETATM 8 N N5 RBF . . . C 2 -3.747 -7.499 -7.187 1 0.28 ? N5 RBF 98 A 1 HETATM 9 C C5A RBF . . . C 2 -3.953 -7.815 -5.894 1 0.3 ? C5A RBF 98 A 1 HETATM 10 C C6 RBF . . . C 2 -2.859 -8.032 -5.047 1 0.37 ? C6 RBF 98 A 1 HETATM 11 C C7 RBF . . . C 2 -3.068 -8.361 -3.702 1 0.39 ? C7 RBF 98 A 1 HETATM 12 C C7M RBF . . . C 2 -1.888 -8.598 -2.791 1 0.48 ? C7M RBF 98 A 1 HETATM 13 C C8 RBF . . . C 2 -4.373 -8.471 -3.202 1 0.5 ? C8 RBF 98 A 1 HETATM 14 C C8M RBF . . . C 2 -4.596 -8.831 -1.752 1 0.64 ? C8M RBF 98 A 1 HETATM 15 C C9 RBF . . . C 2 -5.471 -8.256 -4.047 1 0.58 ? C9 RBF 98 A 1 HETATM 16 C C9A RBF . . . C 2 -5.265 -7.928 -5.397 1 0.44 ? C9A RBF 98 A 1 HETATM 17 N N10 RBF . . . C 2 -6.339 -7.709 -6.264 1 0.55 ? N10 RBF 98 A 1 HETATM 18 C C10 RBF . . . C 2 -6.092 -7.384 -7.6 1 0.41 ? C10 RBF 98 A 1 HETATM 19 C C1' RBF . . . C 2 -7.728 -7.814 -5.778 1 0.85 ? C1' RBF 98 A 1 HETATM 20 C C2' RBF . . . C 2 -7.979 -9.209 -5.202 1 0.56 ? C2' RBF 98 A 1 HETATM 21 O O2' RBF . . . C 2 -6.882 -10.067 -5.529 1 1.3 ? O2' RBF 98 A 1 HETATM 22 C C3' RBF . . . C 2 -9.269 -9.78 -5.788 1 1.15 ? C3' RBF 98 A 1 HETATM 23 O O3' RBF . . . C 2 -9.302 -9.538 -7.197 1 2.08 ? O3' RBF 98 A 1 HETATM 24 C C4' RBF . . . C 2 -10.469 -9.105 -5.126 1 0.66 ? C4' RBF 98 A 1 HETATM 25 O O4' RBF . . . C 2 -10.431 -9.344 -3.716 1 1.56 ? O4' RBF 98 A 1 HETATM 26 C C5' RBF . . . C 2 -11.761 -9.678 -5.705 1 0.98 ? C5' RBF 98 A 1 HETATM 27 O O5' RBF . . . C 2 -11.798 -11.09 -5.483 1 1.79 ? O5' RBF 98 A 1 HETATM 28 H HN3 RBF . . . C 2 -5.443 -6.493 -11.2 1 0.23 ? HN3 RBF 98 A 1 HETATM 29 H HC6 RBF . . . C 2 -1.853 -7.947 -5.431 1 0.49 ? HC6 RBF 98 A 1 HETATM 30 H HC71 RBF . . . C 2 -2.192 -8.453 -1.757 1 1.13 ? HC71 RBF 98 A 1 HETATM 31 H HC72 RBF . . . C 2 -1.093 -7.897 -3.037 1 1.01 ? HC72 RBF 98 A 1 HETATM 32 H HC73 RBF . . . C 2 -1.526 -9.616 -2.923 1 1.13 ? HC73 RBF 98 A 1 HETATM 33 H HC81 RBF . . . C 2 -4.284 -8.003 -1.12 1 1.2 ? HC81 RBF 98 A 1 HETATM 34 H HC82 RBF . . . C 2 -4.012 -9.716 -1.504 1 1.01 ? HC82 RBF 98 A 1 HETATM 35 H HC83 RBF . . . C 2 -5.652 -9.036 -1.587 1 1.22 ? HC83 RBF 98 A 1 HETATM 36 H HC9 RBF . . . C 2 -6.471 -8.34 -3.657 1 0.78 ? HC9 RBF 98 A 1 HETATM 37 H HC11 RBF . . . C 2 -8.414 -7.636 -6.603 1 1.46 ? HC11 RBF 98 A 1 HETATM 38 H HC12 RBF . . . C 2 -7.896 -7.069 -5.003 1 1.54 ? HC12 RBF 98 A 1 HETATM 39 H HC2' RBF . . . C 2 -8.078 -9.139 -4.117 1 0.96 ? HC2' RBF 98 A 1 HETATM 40 H HO2' RBF . . . C 2 -7.113 -10.989 -5.335 1 1.83 ? HO2' RBF 98 A 1 HETATM 41 H HC3' RBF . . . C 2 -9.308 -10.852 -5.603 1 1.96 ? HC3' RBF 98 A 1 HETATM 42 H HO3' RBF . . . C 2 -8.752 -10.19 -7.658 1 2.69 ? HO3' RBF 98 A 1 HETATM 43 H HC4' RBF . . . C 2 -10.431 -8.034 -5.313 1 0.99 ? HC4' RBF 98 A 1 HETATM 44 H HO4' RBF . . . C 2 -10.108 -8.555 -3.254 1 1.91 ? HO4' RBF 98 A 1 HETATM 45 H HC51 RBF . . . C 2 -12.614 -9.212 -5.216 1 1.23 ? HC51 RBF 98 A 1 HETATM 46 H HC52 RBF . . . C 2 -11.801 -9.477 -6.773 1 1.64 ? HC52 RBF 98 A 1 HETATM 47 H HO5' RBF . . . C 2 -12.713 -11.41 -5.536 1 2.17 ? HO5' RBF 98 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 3 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 47 #