data_1HZX
#
_model_server_result.job_id            f1I16PsG2vt7qXZRr5WQpw 
_model_server_result.datetime_utc      '2024-11-27 07:14:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hzx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":1403}' 
#
_entry.id    1HZX 
#
_exptl.entry_id    1HZX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              148.2 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEPTANE-1,2,3-TRIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HZX 
_cell.length_a            97.246 
_cell.length_b            97.246 
_cell.length_c            149.544 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HZX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA,PQS dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,LA 1 1 
B,E,F,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,MA 2 1 
A,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,LA 3 1 
B,E,F,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,MA 3 2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_654 -x+1,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 97.246 0 -74.772 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 V N N 
? 10 W N N 
? 10 X N N 
? 10 Y N N 
? 10 JA N N 
? 10 KA N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 
3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
6 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG C 505 NAG 
2 n C NAG 2 C 2 NAG C 504 NAG 
2 n C MAN 3 C 3 MAN C 503 MAN 
3 n D NAG 1 D 1 NAG E 705 NAG 
3 n D NAG 2 D 2 NAG E 704 NAG 
4 n E NAG 1 E 1 NAG D 605 NAG 
4 n E NAG 2 E 2 NAG D 604 NAG 
4 n E BMA 3 E 3 BMA D 603 MAN 
4 n E BMA 4 E 4 BMA D 602 MAN 
3 n F NAG 1 F 1 NAG F 805 NAG 
3 n F NAG 2 F 2 NAG F 804 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 111 B CYS 110 1_555 B SG CYS 188 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A ND2 ASN 3 A ASN 2 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale3 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 A NZ LYS 297 A LYS 296 1_555 U C15 RET . A RET 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale5 A SG CYS 323 A CYS 322 1_555 S C1 PLM . A PLM 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? 
covale ? covale6 A SG CYS 324 A CYS 323 1_555 T C1 PLM . A PLM 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
covale ? covale7 B C ACE 1 B ACE 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 B ND2 ASN 3 B ASN 2 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale9 B ND2 ASN 16 B ASN 15 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale10 B NZ LYS 297 B LYS 296 1_555 IA C15 RET . B RET 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale11 B SG CYS 323 B CYS 322 1_555 HA C1 PLM . B PLM 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
covale ? covale12 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
covale ? covale13 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? 
covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale15 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale16 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale17 E O3 BMA . E BMA 3 1_555 E C1 BMA . E BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? 
covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
metalc ? metalc1 A OE2 GLU 202 A GLU 201 1_555 O ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc2 A ND1 HIS 212 A HIS 211 1_555 Q ZN ZN . A ZN 962 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 A NE2 GLN 280 A GLN 279 1_555 O ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc4 B ND1 HIS 212 B HIS 211 1_555 GA ZN ZN . B ZN 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
#
_chem_comp.formula           'C7 H16 O3' 
_chem_comp.formula_weight    148.2 
_chem_comp.id                HTO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEPTANE-1,2,3-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 HTO sing 233 n n 
C1 C2 HTO sing 234 n n 
C1 H11 HTO sing 235 n n 
C1 H12 HTO sing 236 n n 
O1 HO1 HTO sing 237 n n 
C2 O2 HTO sing 238 n n 
C2 C3 HTO sing 239 n n 
C2 H2 HTO sing 240 n n 
O2 HO2 HTO sing 241 n n 
C3 O3 HTO sing 242 n n 
C3 C4 HTO sing 243 n n 
C3 H3 HTO sing 244 n n 
O3 HO3 HTO sing 245 n n 
C4 C5 HTO sing 246 n n 
C4 H41 HTO sing 247 n n 
C4 H42 HTO sing 248 n n 
C5 C6 HTO sing 249 n n 
C5 H51 HTO sing 250 n n 
C5 H52 HTO sing 251 n n 
C6 C7 HTO sing 252 n n 
C6 H61 HTO sing 253 n n 
C6 H62 HTO sing 254 n n 
C7 H71 HTO sing 255 n n 
C7 H72 HTO sing 256 n n 
C7 H73 HTO sing 257 n n 
#
_atom_sites.entry_id                     1HZX 
_atom_sites.fract_transf_matrix[1][1]    0.010283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 BNG A 1 1500 1500 BNG BNG . 
H 5 BNG A 1 1501 1501 BNG BNG . 
I 5 BNG A 1 1503 1503 BNG BNG . 
J 5 BNG A 1 1504 1504 BNG BNG . 
K 5 BNG A 1 1505 1505 BNG BNG . 
L 6 HG A 1 901 901 HG HG . 
M 6 HG A 1 903 903 HG HG . 
N 6 HG A 1 905 905 HG HG . 
O 7 ZN A 1 957 957 ZN ZN . 
P 7 ZN A 1 959 959 ZN ZN . 
Q 7 ZN A 1 962 962 ZN ZN . 
R 7 ZN A 1 964 964 ZN ZN . 
S 8 PLM A 1 1322 1322 PLM PLY . 
T 8 PLM A 1 1323 1323 PLM PLY . 
U 9 RET A 1 1296 1296 RET RET . 
V 10 HTO A 1 1400 1400 HTO HTO . 
W 10 HTO A 1 1403 1403 HTO HTO . 
X 10 HTO A 1 1404 1404 HTO HTO . 
Y 10 HTO A 1 1405 1405 HTO HTO . 
Z 5 BNG B 1 1502 1502 BNG BNG . 
AA 5 BNG B 1 1506 1506 BNG BNG . 
BA 6 HG B 1 902 902 HG HG . 
CA 6 HG B 1 904 904 HG HG . 
DA 6 HG B 1 906 906 HG HG . 
EA 7 ZN B 1 956 956 ZN ZN . 
FA 7 ZN B 1 958 958 ZN ZN . 
GA 7 ZN B 1 963 963 ZN ZN . 
HA 8 PLM B 1 1322 1322 PLM PLY . 
IA 9 RET B 1 1296 1296 RET RET . 
JA 10 HTO B 1 1401 1401 HTO HTO . 
KA 10 HTO B 1 1406 1406 HTO HTO . 
LA 11 HOH A 1 2000 2000 HOH HOH . 
LA 11 HOH A 2 2002 2002 HOH HOH . 
LA 11 HOH A 3 2004 2004 HOH HOH . 
LA 11 HOH A 4 2007 2007 HOH HOH . 
LA 11 HOH A 5 2010 2010 HOH HOH . 
LA 11 HOH A 6 2011 2011 HOH HOH . 
LA 11 HOH A 7 2014 2014 HOH HOH . 
MA 11 HOH B 1 2005 2005 HOH HOH . 
MA 11 HOH B 2 2008 2008 HOH HOH . 
MA 11 HOH B 3 2009 2009 HOH HOH . 
MA 11 HOH B 4 2012 2012 HOH HOH . 
MA 11 HOH B 5 2013 2013 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HTO . . . W 10 44.89 5.917 -4.07 1 74.6 ? C1 HTO 1403 A 1 
HETATM 2 O O1 HTO . . . W 10 44.119 6.218 -5.27 1 75.33 ? O1 HTO 1403 A 1 
HETATM 3 C C2 HTO . . . W 10 45.973 6.983 -3.846 1 74.76 ? C2 HTO 1403 A 1 
HETATM 4 O O2 HTO . . . W 10 45.3 8.257 -3.735 1 74.96 ? O2 HTO 1403 A 1 
HETATM 5 C C3 HTO . . . W 10 46.861 6.701 -2.525 1 74.26 ? C3 HTO 1403 A 1 
HETATM 6 O O3 HTO . . . W 10 47.857 7.732 -2.364 1 74.68 ? O3 HTO 1403 A 1 
HETATM 7 C C4 HTO . . . W 10 47.607 5.341 -2.579 1 72.71 ? C4 HTO 1403 A 1 
HETATM 8 C C5 HTO . . . W 10 47.494 4.455 -1.283 1 71.13 ? C5 HTO 1403 A 1 
HETATM 9 C C6 HTO . . . W 10 48.677 3.497 -1.024 1 70.2 ? C6 HTO 1403 A 1 
HETATM 10 C C7 HTO . . . W 10 48.365 2.451 0.043 1 67.74 ? C7 HTO 1403 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           10 
#