data_1HZZ # _model_server_result.job_id AM-Y-HgdN2UIIxcDuimMJQ _model_server_result.datetime_utc '2024-10-10 19:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 1HZZ # _exptl.entry_id 1HZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HZZ _cell.length_a 71.479 _cell.length_b 74.166 _cell.length_c 205.137 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 312 n n PA O2A NAP sing 313 n n PA O5B NAP sing 314 n n PA O3 NAP sing 315 n n O2A HOA2 NAP sing 316 n n O5B C5B NAP sing 317 n n C5B C4B NAP sing 318 n n C5B H51A NAP sing 319 n n C5B H52A NAP sing 320 n n C4B O4B NAP sing 321 n n C4B C3B NAP sing 322 n n C4B H4B NAP sing 323 n n O4B C1B NAP sing 324 n n C3B O3B NAP sing 325 n n C3B C2B NAP sing 326 n n C3B H3B NAP sing 327 n n O3B HO3A NAP sing 328 n n C2B O2B NAP sing 329 n n C2B C1B NAP sing 330 n n C2B H2B NAP sing 331 n n O2B P2B NAP sing 332 n n C1B N9A NAP sing 333 n n C1B H1B NAP sing 334 n n N9A C8A NAP sing 335 n y N9A C4A NAP sing 336 n y C8A N7A NAP doub 337 n y C8A H8A NAP sing 338 n n N7A C5A NAP sing 339 n y C5A C6A NAP sing 340 n y C5A C4A NAP doub 341 n y C6A N6A NAP sing 342 n n C6A N1A NAP doub 343 n y N6A H61A NAP sing 344 n n N6A H62A NAP sing 345 n n N1A C2A NAP sing 346 n y C2A N3A NAP doub 347 n y C2A H2A NAP sing 348 n n N3A C4A NAP sing 349 n y O3 PN NAP sing 350 n n PN O1N NAP doub 351 n n PN O2N NAP sing 352 n n PN O5D NAP sing 353 n n O5D C5D NAP sing 354 n n C5D C4D NAP sing 355 n n C5D H51N NAP sing 356 n n C5D H52N NAP sing 357 n n C4D O4D NAP sing 358 n n C4D C3D NAP sing 359 n n C4D H4D NAP sing 360 n n O4D C1D NAP sing 361 n n C3D O3D NAP sing 362 n n C3D C2D NAP sing 363 n n C3D H3D NAP sing 364 n n O3D HO3N NAP sing 365 n n C2D O2D NAP sing 366 n n C2D C1D NAP sing 367 n n C2D H2D NAP sing 368 n n O2D HO2N NAP sing 369 n n C1D N1N NAP sing 370 n n C1D H1D NAP sing 371 n n N1N C2N NAP sing 372 n y N1N C6N NAP doub 373 n y C2N C3N NAP doub 374 n y C2N H2N NAP sing 375 n n C3N C7N NAP sing 376 n n C3N C4N NAP sing 377 n y C7N O7N NAP doub 378 n n C7N N7N NAP sing 379 n n N7N H71N NAP sing 380 n n N7N H72N NAP sing 381 n n C4N C5N NAP doub 382 n y C4N H4N NAP sing 383 n n C5N C6N NAP sing 384 n y C5N H5N NAP sing 385 n n C6N H6N NAP sing 386 n n P2B O1X NAP doub 387 n n P2B O2X NAP sing 388 n n P2B O3X NAP sing 389 n n O2X HOP2 NAP sing 390 n n O3X HOP3 NAP sing 391 n n # _atom_sites.entry_id 1HZZ _atom_sites.fract_transf_matrix[1][1] 0.01399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 400 400 NAD NAD . E 4 NAP C 1 300 300 NAP NAP . F 5 HOH A 1 401 1 HOH WAT . F 5 HOH A 2 402 2 HOH WAT . F 5 HOH A 3 403 3 HOH WAT . F 5 HOH A 4 404 10 HOH WAT . F 5 HOH A 5 405 11 HOH WAT . F 5 HOH A 6 406 13 HOH WAT . F 5 HOH A 7 407 14 HOH WAT . F 5 HOH A 8 408 16 HOH WAT . F 5 HOH A 9 409 18 HOH WAT . F 5 HOH A 10 410 20 HOH WAT . F 5 HOH A 11 411 23 HOH WAT . F 5 HOH A 12 412 25 HOH WAT . F 5 HOH A 13 413 27 HOH WAT . F 5 HOH A 14 414 29 HOH WAT . F 5 HOH A 15 415 32 HOH WAT . F 5 HOH A 16 416 40 HOH WAT . F 5 HOH A 17 417 50 HOH WAT . F 5 HOH A 18 418 54 HOH WAT . F 5 HOH A 19 419 56 HOH WAT . F 5 HOH A 20 420 59 HOH WAT . F 5 HOH A 21 421 60 HOH WAT . F 5 HOH A 22 422 61 HOH WAT . F 5 HOH A 23 423 65 HOH WAT . F 5 HOH A 24 424 69 HOH WAT . F 5 HOH A 25 425 72 HOH WAT . G 5 HOH B 1 385 4 HOH WAT . G 5 HOH B 2 386 5 HOH WAT . G 5 HOH B 3 387 6 HOH WAT . G 5 HOH B 4 388 9 HOH WAT . G 5 HOH B 5 389 12 HOH WAT . G 5 HOH B 6 390 15 HOH WAT . G 5 HOH B 7 391 17 HOH WAT . G 5 HOH B 8 392 19 HOH WAT . G 5 HOH B 9 393 21 HOH WAT . G 5 HOH B 10 394 24 HOH WAT . G 5 HOH B 11 395 26 HOH WAT . G 5 HOH B 12 396 28 HOH WAT . G 5 HOH B 13 397 31 HOH WAT . G 5 HOH B 14 398 33 HOH WAT . G 5 HOH B 15 399 36 HOH WAT . G 5 HOH B 16 400 37 HOH WAT . G 5 HOH B 17 401 38 HOH WAT . G 5 HOH B 18 402 42 HOH WAT . G 5 HOH B 19 403 44 HOH WAT . G 5 HOH B 20 404 45 HOH WAT . G 5 HOH B 21 405 46 HOH WAT . G 5 HOH B 22 406 47 HOH WAT . G 5 HOH B 23 407 48 HOH WAT . G 5 HOH B 24 408 49 HOH WAT . G 5 HOH B 25 409 51 HOH WAT . G 5 HOH B 26 410 52 HOH WAT . G 5 HOH B 27 411 53 HOH WAT . G 5 HOH B 28 412 55 HOH WAT . G 5 HOH B 29 413 57 HOH WAT . G 5 HOH B 30 414 58 HOH WAT . G 5 HOH B 31 415 62 HOH WAT . G 5 HOH B 32 416 63 HOH WAT . G 5 HOH B 33 417 64 HOH WAT . G 5 HOH B 34 418 66 HOH WAT . G 5 HOH B 35 419 67 HOH WAT . G 5 HOH B 36 420 68 HOH WAT . G 5 HOH B 37 421 70 HOH WAT . G 5 HOH B 38 422 71 HOH WAT . G 5 HOH B 39 423 73 HOH WAT . G 5 HOH B 40 424 75 HOH WAT . H 5 HOH C 1 301 7 HOH WAT . H 5 HOH C 2 302 8 HOH WAT . H 5 HOH C 3 303 22 HOH WAT . H 5 HOH C 4 304 30 HOH WAT . H 5 HOH C 5 305 34 HOH WAT . H 5 HOH C 6 306 39 HOH WAT . H 5 HOH C 7 307 41 HOH WAT . H 5 HOH C 8 308 43 HOH WAT . H 5 HOH C 9 309 74 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 4 -24.907 -36.867 7.847 1 58.52 ? PA NAP 300 C 1 HETATM 2 O O1A NAP . . . E 4 -25.907 -37.957 7.865 1 59.64 ? O1A NAP 300 C 1 HETATM 3 O O2A NAP . . . E 4 -24.103 -36.283 8.941 1 61.23 ? O2A NAP 300 C 1 HETATM 4 O O5B NAP . . . E 4 -24.826 -36.128 6.446 1 60.54 ? O5B NAP 300 C 1 HETATM 5 C C5B NAP . . . E 4 -23.512 -36.028 5.905 1 62.45 ? C5B NAP 300 C 1 HETATM 6 C C4B NAP . . . E 4 -23.498 -35.383 4.531 1 64.4 ? C4B NAP 300 C 1 HETATM 7 O O4B NAP . . . E 4 -22.224 -34.849 4.197 1 65.45 ? O4B NAP 300 C 1 HETATM 8 C C3B NAP . . . E 4 -23.598 -36.513 3.491 1 66.39 ? C3B NAP 300 C 1 HETATM 9 O O3B NAP . . . E 4 -24.384 -35.95 2.425 1 68.53 ? O3B NAP 300 C 1 HETATM 10 C C2B NAP . . . E 4 -22.164 -36.901 3.089 1 65.74 ? C2B NAP 300 C 1 HETATM 11 O O2B NAP . . . E 4 -22.179 -37.674 1.851 1 68.23 ? O2B NAP 300 C 1 HETATM 12 C C1B NAP . . . E 4 -21.641 -35.465 3.04 1 63.82 ? C1B NAP 300 C 1 HETATM 13 N N9A NAP . . . E 4 -20.221 -35.185 2.892 1 61.41 ? N9A NAP 300 C 1 HETATM 14 C C8A NAP . . . E 4 -19.112 -35.766 3.45 1 60.29 ? C8A NAP 300 C 1 HETATM 15 N N7A NAP . . . E 4 -18.017 -35.102 2.994 1 60.33 ? N7A NAP 300 C 1 HETATM 16 C C5A NAP . . . E 4 -18.47 -34.136 2.188 1 58.93 ? C5A NAP 300 C 1 HETATM 17 C C6A NAP . . . E 4 -17.811 -33.145 1.472 1 58.01 ? C6A NAP 300 C 1 HETATM 18 N N6A NAP . . . E 4 -16.496 -33.037 1.514 1 57.71 ? N6A NAP 300 C 1 HETATM 19 N N1A NAP . . . E 4 -18.522 -32.239 0.699 1 57.57 ? N1A NAP 300 C 1 HETATM 20 C C2A NAP . . . E 4 -19.863 -32.308 0.609 1 57.38 ? C2A NAP 300 C 1 HETATM 21 N N3A NAP . . . E 4 -20.5 -33.261 1.303 1 58.2 ? N3A NAP 300 C 1 HETATM 22 C C4A NAP . . . E 4 -19.841 -34.173 2.099 1 59.51 ? C4A NAP 300 C 1 HETATM 23 O O3 NAP . . . E 4 -26.13 -35.838 8.302 1 59.24 ? O3 NAP 300 C 1 HETATM 24 P PN NAP . . . E 4 -26.342 -34.291 8.689 1 57.19 ? PN NAP 300 C 1 HETATM 25 O O1N NAP . . . E 4 -27.372 -33.717 7.84 1 59.64 ? O1N NAP 300 C 1 HETATM 26 O O2N NAP . . . E 4 -25.064 -33.523 8.649 1 59.7 ? O2N NAP 300 C 1 HETATM 27 O O5D NAP . . . E 4 -26.861 -34.476 10.198 1 56.97 ? O5D NAP 300 C 1 HETATM 28 C C5D NAP . . . E 4 -25.962 -34.969 11.201 1 56.94 ? C5D NAP 300 C 1 HETATM 29 C C4D NAP . . . E 4 -26.268 -36.421 11.531 1 56.68 ? C4D NAP 300 C 1 HETATM 30 O O4D NAP . . . E 4 -25.292 -36.953 12.428 1 57.14 ? O4D NAP 300 C 1 HETATM 31 C C3D NAP . . . E 4 -27.625 -36.748 12.196 1 57.42 ? C3D NAP 300 C 1 HETATM 32 O O3D NAP . . . E 4 -28.047 -38.001 11.592 1 59.85 ? O3D NAP 300 C 1 HETATM 33 C C2D NAP . . . E 4 -27.338 -37.052 13.687 1 57.04 ? C2D NAP 300 C 1 HETATM 34 O O2D NAP . . . E 4 -28.143 -38.143 14.152 1 57.92 ? O2D NAP 300 C 1 HETATM 35 C C1D NAP . . . E 4 -25.892 -37.434 13.661 1 56.8 ? C1D NAP 300 C 1 HETATM 36 N N1N NAP . . . E 4 -25.118 -36.973 14.799 1 57.57 ? N1N NAP 300 C 1 HETATM 37 C C2N NAP . . . E 4 -25.132 -35.594 15.174 1 57.32 ? C2N NAP 300 C 1 HETATM 38 C C3N NAP . . . E 4 -24.373 -35.22 16.296 1 57.6 ? C3N NAP 300 C 1 HETATM 39 C C7N NAP . . . E 4 -24.321 -33.758 16.773 1 58.04 ? C7N NAP 300 C 1 HETATM 40 O O7N NAP . . . E 4 -23.654 -33.46 17.754 1 58.46 ? O7N NAP 300 C 1 HETATM 41 N N7N NAP . . . E 4 -25.018 -32.884 16.072 1 58.47 ? N7N NAP 300 C 1 HETATM 42 C C4N NAP . . . E 4 -23.629 -36.219 17.001 1 57.65 ? C4N NAP 300 C 1 HETATM 43 C C5N NAP . . . E 4 -23.593 -37.603 16.62 1 57.58 ? C5N NAP 300 C 1 HETATM 44 C C6N NAP . . . E 4 -24.359 -37.962 15.493 1 57.89 ? C6N NAP 300 C 1 HETATM 45 P P2B NAP . . . E 4 -20.931 -37.922 0.787 1 68.65 ? P2B NAP 300 C 1 HETATM 46 O O1X NAP . . . E 4 -21.549 -38.837 -0.278 1 70.32 ? O1X NAP 300 C 1 HETATM 47 O O2X NAP . . . E 4 -20.47 -36.592 0.328 1 66.84 ? O2X NAP 300 C 1 HETATM 48 O O3X NAP . . . E 4 -19.9 -38.718 1.577 1 68.55 ? O3X NAP 300 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #