data_1HZZ # _model_server_result.job_id c-sb_VAZa4OYJixuC56nig _model_server_result.datetime_utc '2024-11-24 14:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1HZZ # _exptl.entry_id 1HZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HZZ _cell.length_a 71.479 _cell.length_b 74.166 _cell.length_c 205.137 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1HZZ _atom_sites.fract_transf_matrix[1][1] 0.01399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 400 400 NAD NAD . E 4 NAP C 1 300 300 NAP NAP . F 5 HOH A 1 401 1 HOH WAT . F 5 HOH A 2 402 2 HOH WAT . F 5 HOH A 3 403 3 HOH WAT . F 5 HOH A 4 404 10 HOH WAT . F 5 HOH A 5 405 11 HOH WAT . F 5 HOH A 6 406 13 HOH WAT . F 5 HOH A 7 407 14 HOH WAT . F 5 HOH A 8 408 16 HOH WAT . F 5 HOH A 9 409 18 HOH WAT . F 5 HOH A 10 410 20 HOH WAT . F 5 HOH A 11 411 23 HOH WAT . F 5 HOH A 12 412 25 HOH WAT . F 5 HOH A 13 413 27 HOH WAT . F 5 HOH A 14 414 29 HOH WAT . F 5 HOH A 15 415 32 HOH WAT . F 5 HOH A 16 416 40 HOH WAT . F 5 HOH A 17 417 50 HOH WAT . F 5 HOH A 18 418 54 HOH WAT . F 5 HOH A 19 419 56 HOH WAT . F 5 HOH A 20 420 59 HOH WAT . F 5 HOH A 21 421 60 HOH WAT . F 5 HOH A 22 422 61 HOH WAT . F 5 HOH A 23 423 65 HOH WAT . F 5 HOH A 24 424 69 HOH WAT . F 5 HOH A 25 425 72 HOH WAT . G 5 HOH B 1 385 4 HOH WAT . G 5 HOH B 2 386 5 HOH WAT . G 5 HOH B 3 387 6 HOH WAT . G 5 HOH B 4 388 9 HOH WAT . G 5 HOH B 5 389 12 HOH WAT . G 5 HOH B 6 390 15 HOH WAT . G 5 HOH B 7 391 17 HOH WAT . G 5 HOH B 8 392 19 HOH WAT . G 5 HOH B 9 393 21 HOH WAT . G 5 HOH B 10 394 24 HOH WAT . G 5 HOH B 11 395 26 HOH WAT . G 5 HOH B 12 396 28 HOH WAT . G 5 HOH B 13 397 31 HOH WAT . G 5 HOH B 14 398 33 HOH WAT . G 5 HOH B 15 399 36 HOH WAT . G 5 HOH B 16 400 37 HOH WAT . G 5 HOH B 17 401 38 HOH WAT . G 5 HOH B 18 402 42 HOH WAT . G 5 HOH B 19 403 44 HOH WAT . G 5 HOH B 20 404 45 HOH WAT . G 5 HOH B 21 405 46 HOH WAT . G 5 HOH B 22 406 47 HOH WAT . G 5 HOH B 23 407 48 HOH WAT . G 5 HOH B 24 408 49 HOH WAT . G 5 HOH B 25 409 51 HOH WAT . G 5 HOH B 26 410 52 HOH WAT . G 5 HOH B 27 411 53 HOH WAT . G 5 HOH B 28 412 55 HOH WAT . G 5 HOH B 29 413 57 HOH WAT . G 5 HOH B 30 414 58 HOH WAT . G 5 HOH B 31 415 62 HOH WAT . G 5 HOH B 32 416 63 HOH WAT . G 5 HOH B 33 417 64 HOH WAT . G 5 HOH B 34 418 66 HOH WAT . G 5 HOH B 35 419 67 HOH WAT . G 5 HOH B 36 420 68 HOH WAT . G 5 HOH B 37 421 70 HOH WAT . G 5 HOH B 38 422 71 HOH WAT . G 5 HOH B 39 423 73 HOH WAT . G 5 HOH B 40 424 75 HOH WAT . H 5 HOH C 1 301 7 HOH WAT . H 5 HOH C 2 302 8 HOH WAT . H 5 HOH C 3 303 22 HOH WAT . H 5 HOH C 4 304 30 HOH WAT . H 5 HOH C 5 305 34 HOH WAT . H 5 HOH C 6 306 39 HOH WAT . H 5 HOH C 7 307 41 HOH WAT . H 5 HOH C 8 308 43 HOH WAT . H 5 HOH C 9 309 74 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -7.735 6.013 26.807 1 59.47 ? PA NAD 400 A 1 HETATM 2 O O1A NAD . . . D 3 -7.409 4.63 27.319 1 59.12 ? O1A NAD 400 A 1 HETATM 3 O O2A NAD . . . D 3 -7.361 7.073 27.785 1 60.61 ? O2A NAD 400 A 1 HETATM 4 O O5B NAD . . . D 3 -9.297 6.159 26.446 1 57.49 ? O5B NAD 400 A 1 HETATM 5 C C5B NAD . . . D 3 -10.261 5.112 26.634 1 56.16 ? C5B NAD 400 A 1 HETATM 6 C C4B NAD . . . D 3 -11.553 5.542 25.99 1 55.08 ? C4B NAD 400 A 1 HETATM 7 O O4B NAD . . . D 3 -12.304 6.289 26.984 1 57.04 ? O4B NAD 400 A 1 HETATM 8 C C3B NAD . . . D 3 -11.48 6.535 24.804 1 55.28 ? C3B NAD 400 A 1 HETATM 9 O O3B NAD . . . D 3 -11.939 6.067 23.569 1 55.4 ? O3B NAD 400 A 1 HETATM 10 C C2B NAD . . . D 3 -12.244 7.741 25.303 1 55.33 ? C2B NAD 400 A 1 HETATM 11 O O2B NAD . . . D 3 -12.746 8.581 24.3 1 52.71 ? O2B NAD 400 A 1 HETATM 12 C C1B NAD . . . D 3 -13.244 7.022 26.204 1 56.31 ? C1B NAD 400 A 1 HETATM 13 N N9A NAD . . . D 3 -14.058 7.846 27.174 1 56.01 ? N9A NAD 400 A 1 HETATM 14 C C8A NAD . . . D 3 -13.641 8.708 28.183 1 56.05 ? C8A NAD 400 A 1 HETATM 15 N N7A NAD . . . D 3 -14.667 9.273 28.866 1 56.84 ? N7A NAD 400 A 1 HETATM 16 C C5A NAD . . . D 3 -15.793 8.744 28.257 1 57.1 ? C5A NAD 400 A 1 HETATM 17 C C6A NAD . . . D 3 -17.213 8.916 28.482 1 57.63 ? C6A NAD 400 A 1 HETATM 18 N N6A NAD . . . D 3 -17.73 9.712 29.425 1 58 ? N6A NAD 400 A 1 HETATM 19 N N1A NAD . . . D 3 -18.108 8.195 27.644 1 57.33 ? N1A NAD 400 A 1 HETATM 20 C C2A NAD . . . D 3 -17.607 7.351 26.644 1 56.14 ? C2A NAD 400 A 1 HETATM 21 N N3A NAD . . . D 3 -16.315 7.144 26.381 1 55.65 ? N3A NAD 400 A 1 HETATM 22 C C4A NAD . . . D 3 -15.442 7.86 27.212 1 55.67 ? C4A NAD 400 A 1 HETATM 23 O O3 NAD . . . D 3 -7.264 6.265 25.305 1 61.57 ? O3 NAD 400 A 1 HETATM 24 P PN NAD . . . D 3 -6.514 5.337 24.332 1 62.67 ? PN NAD 400 A 1 HETATM 25 O O1N NAD . . . D 3 -7.277 4.069 24.127 1 63.49 ? O1N NAD 400 A 1 HETATM 26 O O2N NAD . . . D 3 -5.167 5.006 24.894 1 63.19 ? O2N NAD 400 A 1 HETATM 27 O O5D NAD . . . D 3 -6.353 6.045 23.038 1 64.53 ? O5D NAD 400 A 1 HETATM 28 C C5D NAD . . . D 3 -7.338 6.536 22.217 1 66.17 ? C5D NAD 400 A 1 HETATM 29 C C4D NAD . . . D 3 -7.151 7.118 21.098 1 68.97 ? C4D NAD 400 A 1 HETATM 30 O O4D NAD . . . D 3 -5.829 7.753 21.162 1 69.71 ? O4D NAD 400 A 1 HETATM 31 C C3D NAD . . . D 3 -7.115 6.015 20.035 1 70.13 ? C3D NAD 400 A 1 HETATM 32 O O3D NAD . . . D 3 -7.912 6.433 18.919 1 72.12 ? O3D NAD 400 A 1 HETATM 33 C C2D NAD . . . D 3 -5.603 5.842 19.756 1 70.55 ? C2D NAD 400 A 1 HETATM 34 O O2D NAD . . . D 3 -5.291 5.619 18.695 1 71.38 ? O2D NAD 400 A 1 HETATM 35 C C1D NAD . . . D 3 -4.941 7.145 20.19 1 70.59 ? C1D NAD 400 A 1 HETATM 36 N N1N NAD . . . D 3 -3.608 6.993 20.724 1 70.86 ? N1N NAD 400 A 1 HETATM 37 C C2N NAD . . . D 3 -2.546 7.167 19.815 1 71.02 ? C2N NAD 400 A 1 HETATM 38 C C3N NAD . . . D 3 -1.224 7.027 20.281 1 71.3 ? C3N NAD 400 A 1 HETATM 39 C C7N NAD . . . D 3 0.13 7.171 19.458 1 70.97 ? C7N NAD 400 A 1 HETATM 40 O O7N NAD . . . D 3 0.234 6.597 18.359 1 70.64 ? O7N NAD 400 A 1 HETATM 41 N N7N NAD . . . D 3 1.113 7.918 19.994 1 70.35 ? N7N NAD 400 A 1 HETATM 42 C C4N NAD . . . D 3 -0.951 6.705 21.692 1 72.11 ? C4N NAD 400 A 1 HETATM 43 C C5N NAD . . . D 3 -2.074 6.544 22.548 1 71.72 ? C5N NAD 400 A 1 HETATM 44 C C6N NAD . . . D 3 -3.409 6.664 22.168 1 71.15 ? C6N NAD 400 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #