data_1I05 # _model_server_result.job_id rI8TjCDkNOcZA74bWZy8wA _model_server_result.datetime_utc '2024-11-24 18:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 1I05 # _exptl.entry_id 1I05 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-HYDROXY-6-METHYL-HEPTAN-3-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I05 _cell.length_a 56.927 _cell.length_b 56.927 _cell.length_c 108.593 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 82 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 36 A GLU 36 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc2 A OE2 GLU 36 A GLU 36 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc3 A OE2 GLU 36 A GLU 36 1_555 F CD CD . A CD 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A NE2 HIS 38 A HIS 38 1_555 F CD CD . A CD 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 A OE2 GLU 61 A GLU 61 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 A OE1 GLU 61 A GLU 61 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc7 A NE2 HIS 64 A HIS 64 1_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 A OD1 ASP 79 A ASP 79 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc9 A OD2 ASP 79 A ASP 79 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc10 A OE1 GLU 80 A GLU 80 3_544 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc11 A OE2 GLU 80 A GLU 80 3_544 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc12 A OE1 GLU 84 A GLU 84 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc13 A OD1 ASP 116 A ASP 116 1_555 H CD CD . A CD 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc14 A OD2 ASP 116 A ASP 116 1_555 H CD CD . A CD 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc15 A NE2 HIS 122 A HIS 122 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc16 A OE2 GLU 126 A GLU 126 4_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc17 A OE1 GLN 133 A GLN 133 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc18 A OG SER 146 A SER 146 5_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc19 A OE1 GLU 157 A GLU 157 5_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 A OE2 GLU 157 A GLU 157 5_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc21 A ND1 HIS 159 A HIS 159 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc22 B CD CD . A CD 401 1_555 J O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc23 C CD CD . A CD 402 1_555 J O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc24 C CD CD . A CD 402 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc25 C CD CD . A CD 402 1_555 J O HOH . A HOH 557 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc26 D CD CD . A CD 403 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc27 D CD CD . A CD 403 1_555 J O HOH . A HOH 566 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc28 F CD CD . A CD 405 1_555 J O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc29 F CD CD . A CD 405 1_555 J O HOH . A HOH 557 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc30 G CD CD . A CD 406 1_555 J O HOH . A HOH 540 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc31 G CD CD . A CD 406 1_555 J O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc32 G CD CD . A CD 406 1_555 J O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc33 H CD CD . A CD 407 1_555 J O HOH . A HOH 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? # _chem_comp.formula 'C8 H16 O2' _chem_comp.formula_weight 144.211 _chem_comp.id LTL _chem_comp.mon_nstd_flag . _chem_comp.name 6-HYDROXY-6-METHYL-HEPTAN-3-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LTL sing 194 n n C1 HC11 LTL sing 195 n n C1 HC12 LTL sing 196 n n C1 HC13 LTL sing 197 n n C2 C6 LTL sing 198 n n C2 O21 LTL sing 199 n n C2 C22 LTL sing 200 n n C6 C7 LTL sing 201 n n C6 HC61 LTL sing 202 n n C6 HC62 LTL sing 203 n n C7 C10 LTL sing 204 n n C7 HC71 LTL sing 205 n n C7 HC72 LTL sing 206 n n C10 C13 LTL sing 207 n n C10 O20 LTL doub 208 n n C13 C14 LTL sing 209 n n C13 H131 LTL sing 210 n n C13 H132 LTL sing 211 n n C14 H141 LTL sing 212 n n C14 H142 LTL sing 213 n n C14 H143 LTL sing 214 n n O21 H21 LTL sing 215 n n C22 H221 LTL sing 216 n n C22 H222 LTL sing 217 n n C22 H223 LTL sing 218 n n # _atom_sites.entry_id 1I05 _atom_sites.fract_transf_matrix[1][1] 0.017566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 401 1 CD CD2 . C 2 CD A 1 402 2 CD CD2 . D 2 CD A 1 403 3 CD CD2 . E 2 CD A 1 404 4 CD CD2 . F 2 CD A 1 405 5 CD CD2 . G 2 CD A 1 406 6 CD CD2 . H 2 CD A 1 407 7 CD CD2 . I 3 LTL A 1 408 1 LTL LTL . J 4 HOH A 1 501 501 HOH WAT . J 4 HOH A 2 502 502 HOH WAT . J 4 HOH A 3 503 503 HOH WAT . J 4 HOH A 4 504 504 HOH WAT . J 4 HOH A 5 505 505 HOH WAT . J 4 HOH A 6 506 506 HOH WAT . J 4 HOH A 7 507 507 HOH WAT . J 4 HOH A 8 508 508 HOH WAT . J 4 HOH A 9 509 509 HOH WAT . J 4 HOH A 10 511 511 HOH WAT . J 4 HOH A 11 512 512 HOH WAT . J 4 HOH A 12 513 513 HOH WAT . J 4 HOH A 13 515 515 HOH WAT . J 4 HOH A 14 516 516 HOH WAT . J 4 HOH A 15 517 517 HOH WAT . J 4 HOH A 16 518 518 HOH WAT . J 4 HOH A 17 519 519 HOH WAT . J 4 HOH A 18 520 520 HOH WAT . J 4 HOH A 19 522 522 HOH WAT . J 4 HOH A 20 523 523 HOH WAT . J 4 HOH A 21 524 524 HOH WAT . J 4 HOH A 22 525 525 HOH WAT . J 4 HOH A 23 527 527 HOH WAT . J 4 HOH A 24 528 528 HOH WAT . J 4 HOH A 25 529 529 HOH WAT . J 4 HOH A 26 530 530 HOH WAT . J 4 HOH A 27 531 531 HOH WAT . J 4 HOH A 28 532 532 HOH WAT . J 4 HOH A 29 533 533 HOH WAT . J 4 HOH A 30 534 534 HOH WAT . J 4 HOH A 31 535 535 HOH WAT . J 4 HOH A 32 536 536 HOH WAT . J 4 HOH A 33 538 538 HOH WAT . J 4 HOH A 34 539 539 HOH WAT . J 4 HOH A 35 540 540 HOH WAT . J 4 HOH A 36 541 541 HOH WAT . J 4 HOH A 37 542 542 HOH WAT . J 4 HOH A 38 544 544 HOH WAT . J 4 HOH A 39 545 545 HOH WAT . J 4 HOH A 40 546 546 HOH WAT . J 4 HOH A 41 548 548 HOH WAT . J 4 HOH A 42 549 549 HOH WAT . J 4 HOH A 43 550 550 HOH WAT . J 4 HOH A 44 551 551 HOH WAT . J 4 HOH A 45 552 552 HOH WAT . J 4 HOH A 46 553 553 HOH WAT . J 4 HOH A 47 554 554 HOH WAT . J 4 HOH A 48 555 555 HOH WAT . J 4 HOH A 49 556 556 HOH WAT . J 4 HOH A 50 557 557 HOH WAT . J 4 HOH A 51 558 558 HOH WAT . J 4 HOH A 52 559 559 HOH WAT . J 4 HOH A 53 560 560 HOH WAT . J 4 HOH A 54 561 561 HOH WAT . J 4 HOH A 55 562 562 HOH WAT . J 4 HOH A 56 563 563 HOH WAT . J 4 HOH A 57 564 564 HOH WAT . J 4 HOH A 58 565 565 HOH WAT . J 4 HOH A 59 566 566 HOH WAT . J 4 HOH A 60 567 567 HOH WAT . J 4 HOH A 61 568 568 HOH WAT . J 4 HOH A 62 571 571 HOH WAT . J 4 HOH A 63 572 572 HOH WAT . J 4 HOH A 64 575 575 HOH WAT . J 4 HOH A 65 576 576 HOH WAT . J 4 HOH A 66 577 577 HOH WAT . J 4 HOH A 67 578 578 HOH WAT . J 4 HOH A 68 579 579 HOH WAT . J 4 HOH A 69 581 581 HOH WAT . J 4 HOH A 70 582 582 HOH WAT . J 4 HOH A 71 584 584 HOH WAT . J 4 HOH A 72 585 585 HOH WAT . J 4 HOH A 73 586 586 HOH WAT . J 4 HOH A 74 587 587 HOH WAT . J 4 HOH A 75 588 588 HOH WAT . J 4 HOH A 76 589 589 HOH WAT . J 4 HOH A 77 590 590 HOH WAT . J 4 HOH A 78 591 591 HOH WAT . J 4 HOH A 79 592 592 HOH WAT . J 4 HOH A 80 593 593 HOH WAT . J 4 HOH A 81 594 594 HOH WAT . J 4 HOH A 82 595 595 HOH WAT . J 4 HOH A 83 596 596 HOH WAT . J 4 HOH A 84 597 597 HOH WAT . J 4 HOH A 85 598 598 HOH WAT . J 4 HOH A 86 599 599 HOH WAT . J 4 HOH A 87 600 600 HOH WAT . J 4 HOH A 88 601 601 HOH WAT . J 4 HOH A 89 604 604 HOH WAT . J 4 HOH A 90 605 605 HOH WAT . J 4 HOH A 91 619 619 HOH WAT . J 4 HOH A 92 620 620 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LTL . . . I 3 20.196 18.154 29.542 1 34.74 ? C1 LTL 408 A 1 HETATM 2 C C2 LTL . . . I 3 21.26 17.508 30.429 1 33.73 ? C2 LTL 408 A 1 HETATM 3 C C6 LTL . . . I 3 22.417 17.343 29.448 1 35.63 ? C6 LTL 408 A 1 HETATM 4 C C7 LTL . . . I 3 23.75 16.673 30.011 1 36.82 ? C7 LTL 408 A 1 HETATM 5 C C10 LTL . . . I 3 24.864 16.457 29.066 1 37.46 ? C10 LTL 408 A 1 HETATM 6 C C13 LTL . . . I 3 25.302 17.542 27.933 1 38.82 ? C13 LTL 408 A 1 HETATM 7 C C14 LTL . . . I 3 26.56 17.103 27.036 1 41.13 ? C14 LTL 408 A 1 HETATM 8 O O20 LTL . . . I 3 25.36 15.399 29.192 1 37.49 ? O20 LTL 408 A 1 HETATM 9 O O21 LTL . . . I 3 20.785 16.259 30.737 1 32.52 ? O21 LTL 408 A 1 HETATM 10 C C22 LTL . . . I 3 21.561 18.467 31.643 1 32.97 ? C22 LTL 408 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #