data_1I0T # _model_server_result.job_id 3zdr5E_JeaPohBJaAldL_Q _model_server_result.datetime_utc '2024-11-15 08:33:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":13}' # _entry.id 1I0T # _exptl.entry_id 1I0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I0T _cell.length_a 18.316 _cell.length_b 30.68 _cell.length_c 42.491 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I0T _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 77 n n N1 HN11 SPM sing 78 n n N1 HN12 SPM sing 79 n n C2 C3 SPM sing 80 n n C2 H21 SPM sing 81 n n C2 H22 SPM sing 82 n n C3 C4 SPM sing 83 n n C3 H31 SPM sing 84 n n C3 H32 SPM sing 85 n n C4 N5 SPM sing 86 n n C4 H41 SPM sing 87 n n C4 H42 SPM sing 88 n n N5 C6 SPM sing 89 n n N5 HN5 SPM sing 90 n n C6 C7 SPM sing 91 n n C6 H61 SPM sing 92 n n C6 H62 SPM sing 93 n n C7 C8 SPM sing 94 n n C7 H71 SPM sing 95 n n C7 H72 SPM sing 96 n n C8 C9 SPM sing 97 n n C8 H81 SPM sing 98 n n C8 H82 SPM sing 99 n n C9 N10 SPM sing 100 n n C9 H91 SPM sing 101 n n C9 H92 SPM sing 102 n n N10 C11 SPM sing 103 n n N10 HN0 SPM sing 104 n n C11 C12 SPM sing 105 n n C11 H111 SPM sing 106 n n C11 H112 SPM sing 107 n n C12 C13 SPM sing 108 n n C12 H121 SPM sing 109 n n C12 H122 SPM sing 110 n n C13 N14 SPM sing 111 n n C13 H131 SPM sing 112 n n C13 H132 SPM sing 113 n n N14 HN41 SPM sing 114 n n N14 HN42 SPM sing 115 n n # _atom_sites.entry_id 1I0T _atom_sites.fract_transf_matrix[1][1] 0.054597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM A 1 13 13 SPM SPM . D 3 HOH A 1 100 100 HOH HOH . D 3 HOH A 2 101 101 HOH HOH . D 3 HOH A 3 103 103 HOH HOH . D 3 HOH A 4 104 104 HOH HOH . D 3 HOH A 5 105 105 HOH HOH . D 3 HOH A 6 110 110 HOH HOH . D 3 HOH A 7 111 111 HOH HOH . D 3 HOH A 8 112 112 HOH HOH . D 3 HOH A 9 115 115 HOH HOH . D 3 HOH A 10 116 116 HOH HOH . D 3 HOH A 11 117 117 HOH HOH . D 3 HOH A 12 118 118 HOH HOH . D 3 HOH A 13 119 119 HOH HOH . D 3 HOH A 14 120 120 HOH HOH . D 3 HOH A 15 121 121 HOH HOH . D 3 HOH A 16 122 122 HOH HOH . D 3 HOH A 17 124 124 HOH HOH . D 3 HOH A 18 128 128 HOH HOH . D 3 HOH A 19 131 131 HOH HOH . D 3 HOH A 20 132 132 HOH HOH . D 3 HOH A 21 145 145 HOH HOH . D 3 HOH A 22 147 147 HOH HOH . E 3 HOH B 1 102 102 HOH HOH . E 3 HOH B 2 106 106 HOH HOH . E 3 HOH B 3 107 107 HOH HOH . E 3 HOH B 4 109 109 HOH HOH . E 3 HOH B 5 113 113 HOH HOH . E 3 HOH B 6 114 114 HOH HOH . E 3 HOH B 7 123 123 HOH HOH . E 3 HOH B 8 125 125 HOH HOH . E 3 HOH B 9 129 129 HOH HOH . E 3 HOH B 10 133 133 HOH HOH . E 3 HOH B 11 134 134 HOH HOH . E 3 HOH B 12 135 135 HOH HOH . E 3 HOH B 13 136 136 HOH HOH . E 3 HOH B 14 149 149 HOH HOH . E 3 HOH B 15 157 157 HOH HOH . E 3 HOH B 16 165 165 HOH HOH . E 3 HOH B 17 173 173 HOH HOH . E 3 HOH B 18 191 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . C 2 23.624 18.368 26.83 1 4.03 ? N1 SPM 13 A 1 HETATM 2 C C2 SPM . . . C 2 23.504 17.015 26.311 1 4.1 ? C2 SPM 13 A 1 HETATM 3 C C3 SPM . . . C 2 22.295 16.903 25.39 1 4.29 ? C3 SPM 13 A 1 HETATM 4 C C4 SPM . . . C 2 22.001 15.493 24.854 1 4.45 ? C4 SPM 13 A 1 HETATM 5 N N5 SPM . . . C 2 23.082 14.973 23.98 1 4.04 ? N5 SPM 13 A 1 HETATM 6 C C6 SPM . . . C 2 22.599 13.803 23.155 1 4.55 ? C6 SPM 13 A 1 HETATM 7 C C7 SPM . . . C 2 23.674 13.174 22.328 1 8.9 ? C7 SPM 13 A 1 HETATM 8 C C8 SPM . . . C 2 23.106 12.211 21.274 1 6.92 ? C8 SPM 13 A 1 HETATM 9 C C9 SPM . . . C 2 24.211 11.608 20.482 1 7.6 ? C9 SPM 13 A 1 HETATM 10 N N10 SPM . . . C 2 23.679 10.761 19.324 1 6.15 ? N10 SPM 13 A 1 HETATM 11 C C11 SPM . . . C 2 24.749 10.378 18.342 1 10.73 ? C11 SPM 13 A 1 HETATM 12 C C12 SPM . . . C 2 24.217 9.299 17.357 1 8.85 ? C12 SPM 13 A 1 HETATM 13 C C13 SPM . . . C 2 25.397 8.85 16.45 1 9.57 ? C13 SPM 13 A 1 HETATM 14 N N14 SPM . . . C 2 25.022 7.763 15.504 1 9.45 ? N14 SPM 13 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #