data_1I0V # _model_server_result.job_id ic4c8jDnrWfCEfp40AZe7g _model_server_result.datetime_utc '2024-11-29 14:05:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":106}' # _entry.id 1I0V # _exptl.entry_id 1I0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I0V _cell.length_a 40.321 _cell.length_b 47.609 _cell.length_c 50.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc3 B CA CA . A CA 105 1_555 D O HOH . A HOH 205 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 B CA CA . A CA 105 1_555 D O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc5 B CA CA . A CA 105 1_555 D O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 B CA CA . A CA 105 1_555 D O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc7 B CA CA . A CA 105 1_555 D O HOH . A HOH 244 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc8 B CA CA . A CA 105 1_555 D O HOH . A HOH 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 2GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2GP doub 1 n n P O2P 2GP sing 2 n n P O3P 2GP sing 3 n n P O2' 2GP sing 4 n n O2P HOP2 2GP sing 5 n n O3P HOP3 2GP sing 6 n n O5' C5' 2GP sing 7 n n O5' HO5' 2GP sing 8 n n C5' C4' 2GP sing 9 n n C5' "H5'1" 2GP sing 10 n n C5' "H5'2" 2GP sing 11 n n C4' O4' 2GP sing 12 n n C4' C3' 2GP sing 13 n n C4' H4' 2GP sing 14 n n O4' C1' 2GP sing 15 n n C3' O3' 2GP sing 16 n n C3' C2' 2GP sing 17 n n C3' H3' 2GP sing 18 n n O3' HO3' 2GP sing 19 n n C2' O2' 2GP sing 20 n n C2' C1' 2GP sing 21 n n C2' H2' 2GP sing 22 n n C1' N9 2GP sing 23 n n C1' H1' 2GP sing 24 n n N9 C8 2GP sing 25 n y N9 C4 2GP sing 26 n y C8 N7 2GP doub 27 n y C8 H8 2GP sing 28 n n N7 C5 2GP sing 29 n y C5 C6 2GP sing 30 n n C5 C4 2GP doub 31 n y C6 O6 2GP doub 32 n n C6 N1 2GP sing 33 n n N1 C2 2GP sing 34 n n N1 HN1 2GP sing 35 n n C2 N2 2GP sing 36 n n C2 N3 2GP doub 37 n n N2 HN21 2GP sing 38 n n N2 HN22 2GP sing 39 n n N3 C4 2GP sing 40 n n # _atom_sites.entry_id 1I0V _atom_sites.fract_transf_matrix[1][1] 0.024801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 105 105 CA CAL . C 3 2GP A 1 106 106 2GP 2GP . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 202 202 HOH HOH . D 4 HOH A 3 203 203 HOH HOH . D 4 HOH A 4 204 204 HOH HOH . D 4 HOH A 5 205 205 HOH HOH . D 4 HOH A 6 206 206 HOH HOH . D 4 HOH A 7 207 207 HOH HOH . D 4 HOH A 8 208 208 HOH HOH . D 4 HOH A 9 209 209 HOH HOH . D 4 HOH A 10 210 210 HOH HOH . D 4 HOH A 11 211 211 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 213 213 HOH HOH . D 4 HOH A 14 214 214 HOH HOH . D 4 HOH A 15 215 215 HOH HOH . D 4 HOH A 16 216 216 HOH HOH . D 4 HOH A 17 217 217 HOH HOH . D 4 HOH A 18 218 218 HOH HOH . D 4 HOH A 19 219 219 HOH HOH . D 4 HOH A 20 220 220 HOH HOH . D 4 HOH A 21 221 221 HOH HOH . D 4 HOH A 22 222 222 HOH HOH . D 4 HOH A 23 223 223 HOH HOH . D 4 HOH A 24 224 224 HOH HOH . D 4 HOH A 25 225 225 HOH HOH . D 4 HOH A 26 226 226 HOH HOH . D 4 HOH A 27 227 227 HOH HOH . D 4 HOH A 28 228 228 HOH HOH . D 4 HOH A 29 229 229 HOH HOH . D 4 HOH A 30 230 230 HOH HOH . D 4 HOH A 31 231 231 HOH HOH . D 4 HOH A 32 232 232 HOH HOH . D 4 HOH A 33 233 233 HOH HOH . D 4 HOH A 34 234 234 HOH HOH . D 4 HOH A 35 235 235 HOH HOH . D 4 HOH A 36 236 236 HOH HOH . D 4 HOH A 37 237 237 HOH HOH . D 4 HOH A 38 238 238 HOH HOH . D 4 HOH A 39 239 239 HOH HOH . D 4 HOH A 40 240 240 HOH HOH . D 4 HOH A 41 241 241 HOH HOH . D 4 HOH A 42 242 242 HOH HOH . D 4 HOH A 43 243 243 HOH HOH . D 4 HOH A 44 244 244 HOH HOH . D 4 HOH A 45 245 245 HOH HOH . D 4 HOH A 46 246 246 HOH HOH . D 4 HOH A 47 247 247 HOH HOH . D 4 HOH A 48 248 248 HOH HOH . D 4 HOH A 49 249 249 HOH HOH . D 4 HOH A 50 250 250 HOH HOH . D 4 HOH A 51 251 251 HOH HOH . D 4 HOH A 52 252 252 HOH HOH . D 4 HOH A 53 253 253 HOH HOH . D 4 HOH A 54 254 254 HOH HOH . D 4 HOH A 55 255 255 HOH HOH . D 4 HOH A 56 256 256 HOH HOH . D 4 HOH A 57 257 257 HOH HOH . D 4 HOH A 58 258 258 HOH HOH . D 4 HOH A 59 259 259 HOH HOH . D 4 HOH A 60 260 260 HOH HOH . D 4 HOH A 61 261 261 HOH HOH . D 4 HOH A 62 262 262 HOH HOH . D 4 HOH A 63 263 263 HOH HOH . D 4 HOH A 64 264 264 HOH HOH . D 4 HOH A 65 265 265 HOH HOH . D 4 HOH A 66 266 266 HOH HOH . D 4 HOH A 67 267 267 HOH HOH . D 4 HOH A 68 268 268 HOH HOH . D 4 HOH A 69 269 269 HOH HOH . D 4 HOH A 70 270 270 HOH HOH . D 4 HOH A 71 271 271 HOH HOH . D 4 HOH A 72 272 272 HOH HOH . D 4 HOH A 73 273 273 HOH HOH . D 4 HOH A 74 274 274 HOH HOH . D 4 HOH A 75 275 275 HOH HOH . D 4 HOH A 76 276 276 HOH HOH . D 4 HOH A 77 277 277 HOH HOH . D 4 HOH A 78 278 278 HOH HOH . D 4 HOH A 79 279 279 HOH HOH . D 4 HOH A 80 280 280 HOH HOH . D 4 HOH A 81 281 281 HOH HOH . D 4 HOH A 82 282 282 HOH HOH . D 4 HOH A 83 283 283 HOH HOH . D 4 HOH A 84 284 284 HOH HOH . D 4 HOH A 85 285 285 HOH HOH . D 4 HOH A 86 286 286 HOH HOH . D 4 HOH A 87 287 287 HOH HOH . D 4 HOH A 88 288 288 HOH HOH . D 4 HOH A 89 289 289 HOH HOH . D 4 HOH A 90 290 290 HOH HOH . D 4 HOH A 91 291 291 HOH HOH . D 4 HOH A 92 292 292 HOH HOH . D 4 HOH A 93 293 293 HOH HOH . D 4 HOH A 94 294 294 HOH HOH . D 4 HOH A 95 295 295 HOH HOH . D 4 HOH A 96 296 296 HOH HOH . D 4 HOH A 97 297 297 HOH HOH . D 4 HOH A 98 298 298 HOH HOH . D 4 HOH A 99 299 299 HOH HOH . D 4 HOH A 100 300 300 HOH HOH . D 4 HOH A 101 301 301 HOH HOH . D 4 HOH A 102 302 302 HOH HOH . D 4 HOH A 103 303 303 HOH HOH . D 4 HOH A 104 304 304 HOH HOH . D 4 HOH A 105 305 305 HOH HOH . D 4 HOH A 106 306 306 HOH HOH . D 4 HOH A 107 307 307 HOH HOH . D 4 HOH A 108 308 308 HOH HOH . D 4 HOH A 109 309 309 HOH HOH . D 4 HOH A 110 310 310 HOH HOH . D 4 HOH A 111 311 311 HOH HOH . D 4 HOH A 112 312 312 HOH HOH . D 4 HOH A 113 313 313 HOH HOH . D 4 HOH A 114 314 314 HOH HOH . D 4 HOH A 115 315 315 HOH HOH . D 4 HOH A 116 316 316 HOH HOH . D 4 HOH A 117 317 317 HOH HOH . D 4 HOH A 118 319 319 HOH HOH . D 4 HOH A 119 320 320 HOH HOH . D 4 HOH A 120 321 321 HOH HOH . D 4 HOH A 121 322 322 HOH HOH . D 4 HOH A 122 324 324 HOH HOH . D 4 HOH A 123 325 325 HOH HOH . D 4 HOH A 124 326 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2GP . A . C 3 18.81 20.392 11.601 0.5 11.29 ? P 2GP 106 A 1 HETATM 2 P P 2GP . B . C 3 19.46 20.524 10.362 0.5 12.84 ? P 2GP 106 A 1 HETATM 3 O O1P 2GP . A . C 3 19.533 20.828 12.817 0.5 18.55 ? O1P 2GP 106 A 1 HETATM 4 O O1P 2GP . B . C 3 20.382 21.255 11.273 0.5 17.34 ? O1P 2GP 106 A 1 HETATM 5 O O2P 2GP . A . C 3 18.332 18.998 11.656 0.5 25.31 ? O2P 2GP 106 A 1 HETATM 6 O O2P 2GP . B . C 3 19.306 19.095 10.714 0.5 16.19 ? O2P 2GP 106 A 1 HETATM 7 O O3P 2GP . A . C 3 17.865 21.36 11.026 0.5 15.14 ? O3P 2GP 106 A 1 HETATM 8 O O3P 2GP . B . C 3 18.192 21.256 10.191 0.5 15.07 ? O3P 2GP 106 A 1 HETATM 9 O O5' 2GP . A . C 3 24.815 19.145 9.046 0.5 36.3 ? O5' 2GP 106 A 1 HETATM 10 O O5' 2GP . B . C 3 24.473 18.852 9.664 0.5 26.64 ? O5' 2GP 106 A 1 HETATM 11 C C5' 2GP . A . C 3 24.329 20.47 9.323 0.5 26.35 ? C5' 2GP 106 A 1 HETATM 12 C C5' 2GP . B . C 3 24.708 19.561 8.417 0.5 21.58 ? C5' 2GP 106 A 1 HETATM 13 C C4' 2GP . A . C 3 22.797 20.551 9.414 0.5 18.75 ? C4' 2GP 106 A 1 HETATM 14 C C4' 2GP . B . C 3 23.494 20.157 7.611 0.5 17.83 ? C4' 2GP 106 A 1 HETATM 15 O O4' 2GP . A . C 3 22.211 19.886 8.27 0.5 19.08 ? O4' 2GP 106 A 1 HETATM 16 O O4' 2GP . B . C 3 22.748 19.091 6.972 0.5 21.95 ? O4' 2GP 106 A 1 HETATM 17 C C3' 2GP . A . C 3 22.262 19.797 10.62 0.5 23.44 ? C3' 2GP 106 A 1 HETATM 18 C C3' 2GP . B . C 3 22.545 20.91 8.553 0.5 13.86 ? C3' 2GP 106 A 1 HETATM 19 O O3' 2GP . A . C 3 22.276 20.584 11.829 0.5 26.42 ? O3' 2GP 106 A 1 HETATM 20 O O3' 2GP . B . C 3 22.212 22.211 7.964 0.5 21.16 ? O3' 2GP 106 A 1 HETATM 21 C C2' 2GP . A . C 3 20.839 19.458 10.174 0.5 18.01 ? C2' 2GP 106 A 1 HETATM 22 C C2' 2GP . B . C 3 21.341 19.923 8.631 0.5 12.46 ? C2' 2GP 106 A 1 HETATM 23 O O2' 2GP . A . C 3 19.891 20.471 10.421 0.5 20.43 ? O2' 2GP 106 A 1 HETATM 24 O O2' 2GP . B . C 3 20.061 20.517 8.838 0.5 15.35 ? O2' 2GP 106 A 1 HETATM 25 C C1' 2GP . A . C 3 20.939 19.338 8.632 0.5 20.72 ? C1' 2GP 106 A 1 HETATM 26 C C1' 2GP . B . C 3 21.349 19.206 7.294 0.5 16.91 ? C1' 2GP 106 A 1 HETATM 27 N N9 2GP . A . C 3 20.819 17.927 8.065 0.5 17.07 ? N9 2GP 106 A 1 HETATM 28 N N9 2GP . B . C 3 20.817 17.766 7.263 0.5 17.69 ? N9 2GP 106 A 1 HETATM 29 C C8 2GP . A . C 3 20.084 17.568 6.955 0.5 15.1 ? C8 2GP 106 A 1 HETATM 30 C C8 2GP . B . C 3 19.945 17.249 6.319 0.5 19.28 ? C8 2GP 106 A 1 HETATM 31 N N7 2GP . A . C 3 20.083 16.287 6.691 0.5 13.11 ? N7 2GP 106 A 1 HETATM 32 N N7 2GP . B . C 3 19.825 15.946 6.36 0.5 18.2 ? N7 2GP 106 A 1 HETATM 33 C C5 2GP . A . C 3 20.877 15.737 7.693 0.5 9.14 ? C5 2GP 106 A 1 HETATM 34 C C5 2GP . B . C 3 20.665 15.59 7.404 0.5 15.59 ? C5 2GP 106 A 1 HETATM 35 C C6 2GP . A . C 3 21.244 14.391 7.966 0.5 8.67 ? C6 2GP 106 A 1 HETATM 36 C C6 2GP . B . C 3 20.982 14.323 7.928 0.5 14.88 ? C6 2GP 106 A 1 HETATM 37 O O6 2GP . A . C 3 20.933 13.412 7.308 0.5 9.32 ? O6 2GP 106 A 1 HETATM 38 O O6 2GP . B . C 3 20.588 13.273 7.452 0.5 21.38 ? O6 2GP 106 A 1 HETATM 39 N N1 2GP . A . C 3 22.046 14.254 9.087 0.5 12.44 ? N1 2GP 106 A 1 HETATM 40 N N1 2GP . B . C 3 21.854 14.345 8.99 0.5 11.03 ? N1 2GP 106 A 1 HETATM 41 C C2 2GP . A . C 3 22.464 15.288 9.869 0.5 11.43 ? C2 2GP 106 A 1 HETATM 42 C C2 2GP . B . C 3 22.405 15.465 9.519 0.5 17.12 ? C2 2GP 106 A 1 HETATM 43 N N2 2GP . A . C 3 23.218 15.027 10.933 0.5 12.02 ? N2 2GP 106 A 1 HETATM 44 N N2 2GP . B . C 3 23.206 15.281 10.564 0.5 19.88 ? N2 2GP 106 A 1 HETATM 45 N N3 2GP . A . C 3 22.128 16.532 9.614 0.5 11.21 ? N3 2GP 106 A 1 HETATM 46 N N3 2GP . B . C 3 22.138 16.679 9.029 0.5 16.31 ? N3 2GP 106 A 1 HETATM 47 C C4 2GP . A . C 3 21.336 16.708 8.527 0.5 11.21 ? C4 2GP 106 A 1 HETATM 48 C C4 2GP . B . C 3 21.26 16.669 7.974 0.5 13.8 ? C4 2GP 106 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #