data_1I18 # _model_server_result.job_id cT6uxdFLxwgQk03Ql61L1A _model_server_result.datetime_utc '2024-11-09 02:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":99}' # _entry.id 1I18 # _exptl.entry_id 1I18 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 376.364 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I18 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RBF sing 275 n n N1 C10 RBF doub 276 n n C2 O2 RBF doub 277 n n C2 N3 RBF sing 278 n n N3 C4 RBF sing 279 n n N3 HN3 RBF sing 280 n n C4 O4 RBF doub 281 n n C4 C4A RBF sing 282 n n C4A N5 RBF doub 283 n n C4A C10 RBF sing 284 n n N5 C5A RBF sing 285 n n C5A C6 RBF doub 286 n y C5A C9A RBF sing 287 n y C6 C7 RBF sing 288 n y C6 HC6 RBF sing 289 n n C7 C7M RBF sing 290 n n C7 C8 RBF doub 291 n y C7M HC71 RBF sing 292 n n C7M HC72 RBF sing 293 n n C7M HC73 RBF sing 294 n n C8 C8M RBF sing 295 n n C8 C9 RBF sing 296 n y C8M HC81 RBF sing 297 n n C8M HC82 RBF sing 298 n n C8M HC83 RBF sing 299 n n C9 C9A RBF doub 300 n y C9 HC9 RBF sing 301 n n C9A N10 RBF sing 302 n n N10 C10 RBF sing 303 n n N10 C1' RBF sing 304 n n C1' C2' RBF sing 305 n n C1' HC11 RBF sing 306 n n C1' HC12 RBF sing 307 n n C2' O2' RBF sing 308 n n C2' C3' RBF sing 309 n n C2' HC2' RBF sing 310 n n O2' HO2' RBF sing 311 n n C3' O3' RBF sing 312 n n C3' C4' RBF sing 313 n n C3' HC3' RBF sing 314 n n O3' HO3' RBF sing 315 n n C4' O4' RBF sing 316 n n C4' C5' RBF sing 317 n n C4' HC4' RBF sing 318 n n O4' HO4' RBF sing 319 n n C5' O5' RBF sing 320 n n C5' HC51 RBF sing 321 n n C5' HC52 RBF sing 322 n n O5' HO5' RBF sing 323 n n # _atom_sites.entry_id 1I18 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RBF A 1 98 98 RBF RBF . D 2 RBF B 1 99 99 RBF RBF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . D 2 -16.271 -7.995 -14.108 1 0 ? N1 RBF 99 B 1 HETATM 2 C C2 RBF . . . D 2 -17.038 -7.593 -13.078 1 0 ? C2 RBF 99 B 1 HETATM 3 O O2 RBF . . . D 2 -16.784 -8.046 -11.841 1 0 ? O2 RBF 99 B 1 HETATM 4 N N3 RBF . . . D 2 -18.092 -6.717 -13.292 1 0 ? N3 RBF 99 B 1 HETATM 5 C C4 RBF . . . D 2 -18.356 -6.257 -14.573 1 0 ? C4 RBF 99 B 1 HETATM 6 O O4 RBF . . . D 2 -19.372 -5.411 -14.786 1 0 ? O4 RBF 99 B 1 HETATM 7 C C4A RBF . . . D 2 -17.554 -6.683 -15.641 1 0 ? C4A RBF 99 B 1 HETATM 8 N N5 RBF . . . D 2 -17.775 -6.264 -16.899 1 0 ? N5 RBF 99 B 1 HETATM 9 C C5A RBF . . . D 2 -17.011 -6.664 -17.933 1 0 ? C5A RBF 99 B 1 HETATM 10 C C6 RBF . . . D 2 -17.287 -6.198 -19.225 1 0 ? C6 RBF 99 B 1 HETATM 11 C C7 RBF . . . D 2 -16.494 -6.615 -20.303 1 0 ? C7 RBF 99 B 1 HETATM 12 C C7M RBF . . . D 2 -16.794 -6.116 -21.696 1 0 ? C7M RBF 99 B 1 HETATM 13 C C8 RBF . . . D 2 -15.425 -7.496 -20.089 1 0 ? C8 RBF 99 B 1 HETATM 14 C C8M RBF . . . D 2 -14.579 -7.949 -21.254 1 0 ? C8M RBF 99 B 1 HETATM 15 C C9 RBF . . . D 2 -15.147 -7.963 -18.797 1 0 ? C9 RBF 99 B 1 HETATM 16 C C9A RBF . . . D 2 -15.939 -7.549 -17.716 1 0 ? C9A RBF 99 B 1 HETATM 17 N N10 RBF . . . D 2 -15.687 -8 -16.42 1 0 ? N10 RBF 99 B 1 HETATM 18 C C10 RBF . . . D 2 -16.496 -7.569 -15.368 1 0 ? C10 RBF 99 B 1 HETATM 19 C C1' RBF . . . D 2 -14.566 -8.921 -16.158 1 0 ? C1' RBF 99 B 1 HETATM 20 C C2' RBF . . . D 2 -14.791 -10.242 -16.896 1 0 ? C2' RBF 99 B 1 HETATM 21 O O2' RBF . . . D 2 -16.163 -10.351 -17.279 1 0 ? O2' RBF 99 B 1 HETATM 22 C C3' RBF . . . D 2 -14.421 -11.405 -15.977 1 0 ? C3' RBF 99 B 1 HETATM 23 O O3' RBF . . . D 2 -15.146 -11.292 -14.749 1 0 ? O3' RBF 99 B 1 HETATM 24 C C4' RBF . . . D 2 -12.921 -11.364 -15.689 1 0 ? C4' RBF 99 B 1 HETATM 25 O O4' RBF . . . D 2 -12.204 -11.201 -16.916 1 0 ? O4' RBF 99 B 1 HETATM 26 C C5' RBF . . . D 2 -12.495 -12.668 -15.019 1 0 ? C5' RBF 99 B 1 HETATM 27 O O5' RBF . . . D 2 -13.072 -12.743 -13.713 1 0 ? O5' RBF 99 B 1 HETATM 28 H HN3 RBF . . . D 2 -18.664 -6.412 -12.518 1 0 ? HN3 RBF 99 B 1 HETATM 29 H HC6 RBF . . . D 2 -18.109 -5.518 -19.392 1 0 ? HC6 RBF 99 B 1 HETATM 30 H HC71 RBF . . . D 2 -15.887 -6.149 -22.297 1 0 ? HC71 RBF 99 B 1 HETATM 31 H HC72 RBF . . . D 2 -17.157 -5.092 -21.646 1 0 ? HC72 RBF 99 B 1 HETATM 32 H HC73 RBF . . . D 2 -17.554 -6.748 -22.153 1 0 ? HC73 RBF 99 B 1 HETATM 33 H HC81 RBF . . . D 2 -13.764 -7.244 -21.407 1 0 ? HC81 RBF 99 B 1 HETATM 34 H HC82 RBF . . . D 2 -15.192 -7.993 -22.152 1 0 ? HC82 RBF 99 B 1 HETATM 35 H HC83 RBF . . . D 2 -14.171 -8.936 -21.045 1 0 ? HC83 RBF 99 B 1 HETATM 36 H HC9 RBF . . . D 2 -14.323 -8.639 -18.635 1 0 ? HC9 RBF 99 B 1 HETATM 37 H HC11 RBF . . . D 2 -14.498 -9.113 -15.089 1 0 ? HC11 RBF 99 B 1 HETATM 38 H HC12 RBF . . . D 2 -13.639 -8.469 -16.503 1 0 ? HC12 RBF 99 B 1 HETATM 39 H HC2' RBF . . . D 2 -14.16 -10.275 -17.783 1 0 ? HC2' RBF 99 B 1 HETATM 40 H HO2' RBF . . . D 2 -16.735 -10.039 -16.56 1 0 ? HO2' RBF 99 B 1 HETATM 41 H HC3' RBF . . . D 2 -14.673 -12.345 -16.462 1 0 ? HC3' RBF 99 B 1 HETATM 42 H HO3' RBF . . . D 2 -15.948 -10.762 -14.886 1 0 ? HO3' RBF 99 B 1 HETATM 43 H HC4' RBF . . . D 2 -12.701 -10.53 -15.027 1 0 ? HC4' RBF 99 B 1 HETATM 44 H HO4' RBF . . . D 2 -12.353 -10.311 -17.271 1 0 ? HO4' RBF 99 B 1 HETATM 45 H HC51 RBF . . . D 2 -12.839 -13.51 -15.614 1 0 ? HC51 RBF 99 B 1 HETATM 46 H HC52 RBF . . . D 2 -11.411 -12.697 -14.941 1 0 ? HC52 RBF 99 B 1 HETATM 47 H HO5' RBF . . . D 2 -13.544 -13.582 -13.606 1 0 ? HO5' RBF 99 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 6485 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #