data_1I2L # _model_server_result.job_id tpIsxgdXPm5J_td6yJJA2A _model_server_result.datetime_utc '2025-06-17 01:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1I2L # _exptl.entry_id 1I2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.234 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I2L _cell.length_a 39.494 _cell.length_b 72.06 _cell.length_c 81.662 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 39.494 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N3 O7 P' _chem_comp.formula_weight 333.234 _chem_comp.id DCS _chem_comp.mon_nstd_flag . _chem_comp.name D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCS doub 83 n y N1 C6 DCS sing 84 n y C2 C2A DCS sing 85 n n C2 C3 DCS sing 86 n y C2A H2A1 DCS sing 87 n n C2A H2A2 DCS sing 88 n n C2A H2A3 DCS sing 89 n n C3 O3 DCS sing 90 n n C3 C4 DCS doub 91 n y O3 HO3 DCS sing 92 n n C4 C4A DCS sing 93 n n C4 C5 DCS sing 94 n y C4A N DCS sing 95 n n C4A H4A1 DCS sing 96 n n C4A H4A2 DCS sing 97 n n C5 C6 DCS doub 98 n y C5 C5A DCS sing 99 n n C6 H6 DCS sing 100 n n C5A O4P DCS sing 101 n n C5A H5A1 DCS sing 102 n n C5A H5A2 DCS sing 103 n n O4P P DCS sing 104 n n P O1P DCS doub 105 n n P O2P DCS sing 106 n n P O3P DCS sing 107 n n O2P HOP2 DCS sing 108 n n O3P HOP3 DCS sing 109 n n N CA DCS sing 110 n n N HN DCS sing 111 n n CA C DCS sing 112 n n CA CB DCS sing 113 n n CA HA DCS sing 114 n n C O DCS doub 115 n n C ND DCS sing 116 n n ND OG DCS sing 117 n n ND HND DCS sing 118 n n OG CB DCS sing 119 n n CB HB1 DCS sing 120 n n CB HB2 DCS sing 121 n n # _atom_sites.entry_id 1I2L _atom_sites.fract_transf_matrix[1][1] 0.02532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DCS A 1 301 301 DCS SCP . C 3 HOH A 1 402 402 HOH WAT . C 3 HOH A 2 403 403 HOH WAT . C 3 HOH A 3 407 407 HOH WAT . C 3 HOH A 4 410 410 HOH WAT . C 3 HOH A 5 413 413 HOH WAT . C 3 HOH A 6 414 414 HOH WAT . C 3 HOH A 7 418 418 HOH WAT . C 3 HOH A 8 419 419 HOH WAT . C 3 HOH A 9 420 420 HOH WAT . C 3 HOH A 10 422 422 HOH WAT . C 3 HOH A 11 423 423 HOH WAT . C 3 HOH A 12 424 424 HOH WAT . C 3 HOH A 13 425 425 HOH WAT . C 3 HOH A 14 428 428 HOH WAT . C 3 HOH A 15 429 429 HOH WAT . C 3 HOH A 16 430 430 HOH WAT . C 3 HOH A 17 435 435 HOH WAT . C 3 HOH A 18 436 436 HOH WAT . C 3 HOH A 19 437 437 HOH WAT . C 3 HOH A 20 440 440 HOH WAT . C 3 HOH A 21 441 441 HOH WAT . C 3 HOH A 22 445 445 HOH WAT . C 3 HOH A 23 447 447 HOH WAT . C 3 HOH A 24 448 448 HOH WAT . C 3 HOH A 25 450 450 HOH WAT . C 3 HOH A 26 454 454 HOH WAT . C 3 HOH A 27 457 457 HOH WAT . C 3 HOH A 28 459 459 HOH WAT . C 3 HOH A 29 460 460 HOH WAT . C 3 HOH A 30 461 461 HOH WAT . C 3 HOH A 31 466 466 HOH WAT . C 3 HOH A 32 474 474 HOH WAT . C 3 HOH A 33 475 475 HOH WAT . C 3 HOH A 34 477 477 HOH WAT . C 3 HOH A 35 480 480 HOH WAT . C 3 HOH A 36 482 482 HOH WAT . C 3 HOH A 37 487 487 HOH WAT . C 3 HOH A 38 488 488 HOH WAT . C 3 HOH A 39 489 489 HOH WAT . C 3 HOH A 40 491 491 HOH WAT . C 3 HOH A 41 493 493 HOH WAT . C 3 HOH A 42 494 494 HOH WAT . C 3 HOH A 43 496 496 HOH WAT . C 3 HOH A 44 498 498 HOH WAT . C 3 HOH A 45 499 499 HOH WAT . C 3 HOH A 46 500 500 HOH WAT . C 3 HOH A 47 501 501 HOH WAT . C 3 HOH A 48 502 502 HOH WAT . C 3 HOH A 49 503 503 HOH WAT . C 3 HOH A 50 506 506 HOH WAT . C 3 HOH A 51 510 510 HOH WAT . C 3 HOH A 52 511 511 HOH WAT . C 3 HOH A 53 512 512 HOH WAT . C 3 HOH A 54 513 513 HOH WAT . C 3 HOH A 55 515 515 HOH WAT . C 3 HOH A 56 516 516 HOH WAT . C 3 HOH A 57 517 517 HOH WAT . C 3 HOH A 58 518 518 HOH WAT . C 3 HOH A 59 521 521 HOH WAT . C 3 HOH A 60 522 522 HOH WAT . C 3 HOH A 61 523 523 HOH WAT . C 3 HOH A 62 524 524 HOH WAT . C 3 HOH A 63 526 526 HOH WAT . C 3 HOH A 64 527 527 HOH WAT . C 3 HOH A 65 530 530 HOH WAT . C 3 HOH A 66 531 531 HOH WAT . C 3 HOH A 67 532 532 HOH WAT . C 3 HOH A 68 533 533 HOH WAT . C 3 HOH A 69 534 534 HOH WAT . C 3 HOH A 70 536 536 HOH WAT . C 3 HOH A 71 537 537 HOH WAT . C 3 HOH A 72 539 539 HOH WAT . C 3 HOH A 73 540 540 HOH WAT . C 3 HOH A 74 541 541 HOH WAT . C 3 HOH A 75 542 542 HOH WAT . C 3 HOH A 76 543 543 HOH WAT . C 3 HOH A 77 547 547 HOH WAT . C 3 HOH A 78 551 551 HOH WAT . C 3 HOH A 79 556 556 HOH WAT . C 3 HOH A 80 562 562 HOH WAT . C 3 HOH A 81 563 563 HOH WAT . C 3 HOH A 82 564 564 HOH WAT . C 3 HOH A 83 566 566 HOH WAT . C 3 HOH A 84 568 568 HOH WAT . C 3 HOH A 85 574 574 HOH WAT . C 3 HOH A 86 577 577 HOH WAT . C 3 HOH A 87 582 582 HOH WAT . C 3 HOH A 88 583 583 HOH WAT . C 3 HOH A 89 594 594 HOH WAT . C 3 HOH A 90 603 603 HOH WAT . C 3 HOH A 91 606 606 HOH WAT . C 3 HOH A 92 801 801 HOH WAT . C 3 HOH A 93 802 802 HOH WAT . C 3 HOH A 94 803 803 HOH WAT . C 3 HOH A 95 804 804 HOH WAT . C 3 HOH A 96 805 805 HOH WAT . C 3 HOH A 97 806 806 HOH WAT . C 3 HOH A 98 807 807 HOH WAT . C 3 HOH A 99 808 808 HOH WAT . C 3 HOH A 100 809 809 HOH WAT . C 3 HOH A 101 810 810 HOH WAT . C 3 HOH A 102 811 811 HOH WAT . C 3 HOH A 103 812 812 HOH WAT . C 3 HOH A 104 813 813 HOH WAT . C 3 HOH A 105 814 814 HOH WAT . C 3 HOH A 106 815 815 HOH WAT . C 3 HOH A 107 816 816 HOH WAT . C 3 HOH A 108 817 817 HOH WAT . C 3 HOH A 109 818 818 HOH WAT . C 3 HOH A 110 819 819 HOH WAT . C 3 HOH A 111 820 820 HOH WAT . C 3 HOH A 112 821 821 HOH WAT . C 3 HOH A 113 822 822 HOH WAT . C 3 HOH A 114 823 823 HOH WAT . C 3 HOH A 115 824 824 HOH WAT . C 3 HOH A 116 825 825 HOH WAT . C 3 HOH A 117 826 826 HOH WAT . C 3 HOH A 118 827 827 HOH WAT . C 3 HOH A 119 828 828 HOH WAT . C 3 HOH A 120 829 829 HOH WAT . C 3 HOH A 121 830 830 HOH WAT . C 3 HOH A 122 831 831 HOH WAT . C 3 HOH A 123 832 832 HOH WAT . C 3 HOH A 124 833 833 HOH WAT . C 3 HOH A 125 834 834 HOH WAT . C 3 HOH A 126 835 835 HOH WAT . C 3 HOH A 127 836 836 HOH WAT . C 3 HOH A 128 837 837 HOH WAT . C 3 HOH A 129 838 838 HOH WAT . C 3 HOH A 130 839 839 HOH WAT . C 3 HOH A 131 840 840 HOH WAT . C 3 HOH A 132 841 841 HOH WAT . C 3 HOH A 133 842 842 HOH WAT . C 3 HOH A 134 843 843 HOH WAT . C 3 HOH A 135 844 844 HOH WAT . C 3 HOH A 136 845 845 HOH WAT . C 3 HOH A 137 846 846 HOH WAT . C 3 HOH A 138 847 847 HOH WAT . C 3 HOH A 139 848 848 HOH WAT . C 3 HOH A 140 849 849 HOH WAT . C 3 HOH A 141 850 850 HOH WAT . C 3 HOH A 142 851 851 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCS . . . B 2 15.325 12.785 22.987 1 28.99 ? N1 DCS 301 A 1 HETATM 2 C C2 DCS . . . B 2 15.059 11.837 22.001 1 31.46 ? C2 DCS 301 A 1 HETATM 3 C C2A DCS . . . B 2 14.801 10.407 22.39 1 28.43 ? C2A DCS 301 A 1 HETATM 4 C C3 DCS . . . B 2 15.047 12.3 20.626 1 31.03 ? C3 DCS 301 A 1 HETATM 5 O O3 DCS . . . B 2 14.788 11.359 19.702 1 27.8 ? O3 DCS 301 A 1 HETATM 6 C C4 DCS . . . B 2 15.299 13.664 20.324 1 32.84 ? C4 DCS 301 A 1 HETATM 7 C C4A DCS . . . B 2 15.3 14.195 18.947 1 37.23 ? C4A DCS 301 A 1 HETATM 8 C C5 DCS . . . B 2 15.568 14.557 21.441 1 29.51 ? C5 DCS 301 A 1 HETATM 9 C C6 DCS . . . B 2 15.578 14.114 22.746 1 29.12 ? C6 DCS 301 A 1 HETATM 10 C C5A DCS . . . B 2 15.859 16.036 21.139 1 25.39 ? C5A DCS 301 A 1 HETATM 11 O O4P DCS . . . B 2 17.054 16.505 20.522 1 26.2 ? O4P DCS 301 A 1 HETATM 12 P P DCS . . . B 2 17.138 17.797 19.58 1 21.51 ? P DCS 301 A 1 HETATM 13 O O1P DCS . . . B 2 16.237 17.576 18.435 1 26.83 ? O1P DCS 301 A 1 HETATM 14 O O2P DCS . . . B 2 18.584 17.775 19.074 1 27.56 ? O2P DCS 301 A 1 HETATM 15 O O3P DCS . . . B 2 16.859 18.957 20.41 1 21.67 ? O3P DCS 301 A 1 HETATM 16 N N DCS . . . B 2 14.273 14.145 18.136 1 41.34 ? N DCS 301 A 1 HETATM 17 C CA DCS . . . B 2 14.283 14.76 16.727 1 43.71 ? CA DCS 301 A 1 HETATM 18 C C DCS . . . B 2 13.592 13.613 16.284 1 44.81 ? C DCS 301 A 1 HETATM 19 O O DCS . . . B 2 13.832 12.346 16.104 1 44.22 ? O DCS 301 A 1 HETATM 20 N ND DCS . . . B 2 12.377 13.978 15.972 1 45.09 ? ND DCS 301 A 1 HETATM 21 O OG DCS . . . B 2 12.265 15.388 16.209 1 44.31 ? OG DCS 301 A 1 HETATM 22 C CB DCS . . . B 2 13.45 15.878 16.678 1 43.72 ? CB DCS 301 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 22 #