data_1I2W
#
_model_server_result.job_id            A338WQwuv-nJYUlXMuBZeA 
_model_server_result.datetime_utc      '2024-11-22 08:09:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1i2w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2300}' 
#
_entry.id    1I2W 
#
_exptl.entry_id    1I2W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              429.468 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.18 
_cell.angle_gamma         90 
_cell.entry_id            1I2W 
_cell.length_a            47.344 
_cell.length_b            106.372 
_cell.length_c            63.873 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1I2W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 61 A SER 70 1_555 C C14 1QL . A 1QL 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale2 B OG SER 61 B SER 70 1_555 D C14 1QL . B 1QL 2300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
#
_chem_comp.formula           'C16 H19 N3 O7 S2' 
_chem_comp.formula_weight    429.468 
_chem_comp.id                1QL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Cefoxitin, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 S1 1QL sing 1 n n 
C9 C10 1QL sing 2 n n 
C11 C10 1QL sing 3 n n 
S1 C8 1QL sing 4 n n 
C10 C13 1QL doub 5 n n 
O4 C14 1QL doub 6 n n 
C8 N2 1QL sing 7 n n 
C8 C1 1QL sing 8 n n 
C14 C1 1QL sing 9 n n 
C13 N2 1QL sing 10 n n 
C13 C15 1QL sing 11 n n 
C1 O 1QL sing 12 n n 
C1 N 1QL sing 13 n n 
O C 1QL sing 14 n n 
C15 O5 1QL doub 15 n n 
C15 O6 1QL sing 16 n n 
N C2 1QL sing 17 n n 
O1 C2 1QL doub 18 n n 
C2 C3 1QL sing 19 n n 
C5 C4 1QL doub 20 n y 
C5 C6 1QL sing 21 n y 
C3 C4 1QL sing 22 n n 
C4 S 1QL sing 23 n y 
C6 C7 1QL doub 24 n y 
C7 S 1QL sing 25 n y 
C6 H1 1QL sing 26 n n 
O6 H2 1QL sing 27 n n 
C5 H3 1QL sing 28 n n 
C8 H4 1QL sing 29 n n 
C11 H5 1QL sing 30 n n 
C11 H6 1QL sing 31 n n 
C9 H7 1QL sing 32 n n 
C9 H8 1QL sing 33 n n 
C14 H9 1QL sing 34 n n 
C H10 1QL sing 35 n n 
C H11 1QL sing 36 n n 
C H12 1QL sing 37 n n 
N H13 1QL sing 38 n n 
C3 H14 1QL sing 39 n n 
C3 H15 1QL sing 40 n n 
C7 H16 1QL sing 41 n n 
C11 O2 1QL sing 42 n n 
O2 C16 1QL sing 43 n n 
N2 H17 1QL sing 44 n n 
C16 O3 1QL doub 45 n n 
C16 N1 1QL sing 46 n n 
N1 H24 1QL sing 47 n n 
N1 H25 1QL sing 48 n n 
#
_atom_sites.entry_id                     1I2W 
_atom_sites.fract_transf_matrix[1][1]    0.021122 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001545 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1QL A 1 1300 300 1QL CFX . 
D 2 1QL B 1 2300 300 1QL CFX . 
E 3 OUT B 1 2301 301 OUT OUT . 
F 4 HOH A 1 1301 301 HOH WAT . 
F 4 HOH A 2 1302 302 HOH WAT . 
F 4 HOH A 3 1303 303 HOH WAT . 
F 4 HOH A 4 1304 304 HOH WAT . 
F 4 HOH A 5 1305 305 HOH WAT . 
F 4 HOH A 6 1306 306 HOH WAT . 
F 4 HOH A 7 1307 307 HOH WAT . 
F 4 HOH A 8 1308 308 HOH WAT . 
F 4 HOH A 9 1310 310 HOH WAT . 
F 4 HOH A 10 1311 311 HOH WAT . 
F 4 HOH A 11 1312 312 HOH WAT . 
F 4 HOH A 12 1313 313 HOH WAT . 
F 4 HOH A 13 1314 314 HOH WAT . 
F 4 HOH A 14 1315 315 HOH WAT . 
F 4 HOH A 15 1316 316 HOH WAT . 
F 4 HOH A 16 1317 317 HOH WAT . 
F 4 HOH A 17 1319 319 HOH WAT . 
F 4 HOH A 18 1320 320 HOH WAT . 
F 4 HOH A 19 1321 321 HOH WAT . 
F 4 HOH A 20 1322 322 HOH WAT . 
F 4 HOH A 21 1323 323 HOH WAT . 
F 4 HOH A 22 1324 324 HOH WAT . 
F 4 HOH A 23 1325 325 HOH WAT . 
F 4 HOH A 24 1326 326 HOH WAT . 
F 4 HOH A 25 1327 327 HOH WAT . 
F 4 HOH A 26 1328 328 HOH WAT . 
F 4 HOH A 27 1329 329 HOH WAT . 
F 4 HOH A 28 1330 330 HOH WAT . 
F 4 HOH A 29 1331 331 HOH WAT . 
F 4 HOH A 30 1332 332 HOH WAT . 
F 4 HOH A 31 1333 333 HOH WAT . 
F 4 HOH A 32 1334 334 HOH WAT . 
F 4 HOH A 33 1335 335 HOH WAT . 
F 4 HOH A 34 1338 338 HOH WAT . 
F 4 HOH A 35 1339 339 HOH WAT . 
F 4 HOH A 36 1340 340 HOH WAT . 
F 4 HOH A 37 1341 341 HOH WAT . 
F 4 HOH A 38 1342 342 HOH WAT . 
F 4 HOH A 39 1343 343 HOH WAT . 
F 4 HOH A 40 1344 344 HOH WAT . 
F 4 HOH A 41 1345 345 HOH WAT . 
F 4 HOH A 42 1346 346 HOH WAT . 
F 4 HOH A 43 1347 347 HOH WAT . 
F 4 HOH A 44 1348 348 HOH WAT . 
F 4 HOH A 45 1349 349 HOH WAT . 
F 4 HOH A 46 1350 350 HOH WAT . 
F 4 HOH A 47 1351 351 HOH WAT . 
F 4 HOH A 48 1352 352 HOH WAT . 
F 4 HOH A 49 1353 353 HOH WAT . 
F 4 HOH A 50 1354 354 HOH WAT . 
F 4 HOH A 51 1355 355 HOH WAT . 
F 4 HOH A 52 1356 356 HOH WAT . 
F 4 HOH A 53 1357 357 HOH WAT . 
F 4 HOH A 54 1358 358 HOH WAT . 
F 4 HOH A 55 1360 360 HOH WAT . 
F 4 HOH A 56 1361 361 HOH WAT . 
F 4 HOH A 57 1362 362 HOH WAT . 
F 4 HOH A 58 1363 363 HOH WAT . 
F 4 HOH A 59 1364 364 HOH WAT . 
F 4 HOH A 60 1365 365 HOH WAT . 
F 4 HOH A 61 1366 366 HOH WAT . 
F 4 HOH A 62 1367 367 HOH WAT . 
F 4 HOH A 63 1368 368 HOH WAT . 
F 4 HOH A 64 1369 369 HOH WAT . 
F 4 HOH A 65 1370 370 HOH WAT . 
F 4 HOH A 66 1371 371 HOH WAT . 
F 4 HOH A 67 1372 372 HOH WAT . 
F 4 HOH A 68 1373 373 HOH WAT . 
F 4 HOH A 69 1375 375 HOH WAT . 
F 4 HOH A 70 1376 376 HOH WAT . 
F 4 HOH A 71 1377 377 HOH WAT . 
F 4 HOH A 72 1378 378 HOH WAT . 
F 4 HOH A 73 2307 307 HOH WAT . 
F 4 HOH A 74 2308 308 HOH WAT . 
F 4 HOH A 75 2322 322 HOH WAT . 
G 4 HOH B 1 1309 309 HOH WAT . 
G 4 HOH B 2 1318 318 HOH WAT . 
G 4 HOH B 3 1336 336 HOH WAT . 
G 4 HOH B 4 1337 337 HOH WAT . 
G 4 HOH B 5 1359 359 HOH WAT . 
G 4 HOH B 6 1374 374 HOH WAT . 
G 4 HOH B 7 2302 302 HOH WAT . 
G 4 HOH B 8 2303 303 HOH WAT . 
G 4 HOH B 9 2304 304 HOH WAT . 
G 4 HOH B 10 2305 305 HOH WAT . 
G 4 HOH B 11 2306 306 HOH WAT . 
G 4 HOH B 12 2309 309 HOH WAT . 
G 4 HOH B 13 2310 310 HOH WAT . 
G 4 HOH B 14 2311 311 HOH WAT . 
G 4 HOH B 15 2312 312 HOH WAT . 
G 4 HOH B 16 2313 313 HOH WAT . 
G 4 HOH B 17 2314 314 HOH WAT . 
G 4 HOH B 18 2315 315 HOH WAT . 
G 4 HOH B 19 2316 316 HOH WAT . 
G 4 HOH B 20 2317 317 HOH WAT . 
G 4 HOH B 21 2318 318 HOH WAT . 
G 4 HOH B 22 2319 319 HOH WAT . 
G 4 HOH B 23 2320 320 HOH WAT . 
G 4 HOH B 24 2321 321 HOH WAT . 
G 4 HOH B 25 2323 323 HOH WAT . 
G 4 HOH B 26 2324 324 HOH WAT . 
G 4 HOH B 27 2325 325 HOH WAT . 
G 4 HOH B 28 2326 326 HOH WAT . 
G 4 HOH B 29 2327 327 HOH WAT . 
G 4 HOH B 30 2328 328 HOH WAT . 
G 4 HOH B 31 2329 329 HOH WAT . 
G 4 HOH B 32 2330 330 HOH WAT . 
G 4 HOH B 33 2331 331 HOH WAT . 
G 4 HOH B 34 2332 332 HOH WAT . 
G 4 HOH B 35 2333 333 HOH WAT . 
G 4 HOH B 36 2334 334 HOH WAT . 
G 4 HOH B 37 2335 335 HOH WAT . 
G 4 HOH B 38 2336 336 HOH WAT . 
G 4 HOH B 39 2337 337 HOH WAT . 
G 4 HOH B 40 2338 338 HOH WAT . 
G 4 HOH B 41 2339 339 HOH WAT . 
G 4 HOH B 42 2340 340 HOH WAT . 
G 4 HOH B 43 2341 341 HOH WAT . 
G 4 HOH B 44 2342 342 HOH WAT . 
G 4 HOH B 45 2343 343 HOH WAT . 
G 4 HOH B 46 2344 344 HOH WAT . 
G 4 HOH B 47 2345 345 HOH WAT . 
G 4 HOH B 48 2346 346 HOH WAT . 
G 4 HOH B 49 2347 347 HOH WAT . 
G 4 HOH B 50 2348 348 HOH WAT . 
G 4 HOH B 51 2349 349 HOH WAT . 
G 4 HOH B 52 2350 350 HOH WAT . 
G 4 HOH B 53 2351 351 HOH WAT . 
G 4 HOH B 54 2352 352 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 1QL . . . D 2 12.754 22.506 64.577 1 32.66 ? C4 1QL 2300 B 1 
HETATM 2 C C2 1QL . . . D 2 11.785 21.576 62.424 1 25.88 ? C2 1QL 2300 B 1 
HETATM 3 N N2 1QL . . . D 2 9.522 25.198 59.921 1 25.54 ? N2 1QL 2300 B 1 
HETATM 4 C C6 1QL . . . D 2 13.289 24.564 65.531 1 31.58 ? C6 1QL 2300 B 1 
HETATM 5 O O6 1QL . . . D 2 8.468 26.209 57.213 1 27.44 ? O6 1QL 2300 B 1 
HETATM 6 C C5 1QL . . . D 2 13.369 23.723 64.371 1 30.07 ? C5 1QL 2300 B 1 
HETATM 7 C C8 1QL . . . D 2 10.261 24.733 61.057 1 28.52 ? C8 1QL 2300 B 1 
HETATM 8 C C15 1QL . . . D 2 9.658 26.046 57.58 1 27.37 ? C15 1QL 2300 B 1 
HETATM 9 O O5 1QL . . . D 2 10.631 25.82 56.816 1 26.82 ? O5 1QL 2300 B 1 
HETATM 10 C C13 1QL . . . D 2 10.017 26.21 59.073 1 24.73 ? C13 1QL 2300 B 1 
HETATM 11 C C10 1QL . . . D 2 10.789 27.254 59.455 1 24.26 ? C10 1QL 2300 B 1 
HETATM 12 C C11 1QL . . . D 2 10.892 28.496 58.643 1 22.98 ? C11 1QL 2300 B 1 
HETATM 13 C C9 1QL . . . D 2 11.606 27.267 60.652 1 23.56 ? C9 1QL 2300 B 1 
HETATM 14 S S1 1QL . . . D 2 11.796 25.597 61.097 1 23.95 ? S1 1QL 2300 B 1 
HETATM 15 C C14 1QL . . . D 2 11.038 22.653 59.926 1 22.67 ? C14 1QL 2300 B 1 
HETATM 16 O O4 1QL . . . D 2 12.169 22.911 59.554 1 19.74 ? O4 1QL 2300 B 1 
HETATM 17 C C1 1QL . . . D 2 10.337 23.192 61.16 1 25.99 ? C1 1QL 2300 B 1 
HETATM 18 O O 1QL . . . D 2 9.045 22.633 61.068 1 29.37 ? O 1QL 2300 B 1 
HETATM 19 C C 1QL . . . D 2 8.09 23.072 62.014 1 33.49 ? C 1QL 2300 B 1 
HETATM 20 N N 1QL . . . D 2 11.023 22.729 62.371 1 25.4 ? N 1QL 2300 B 1 
HETATM 21 O O1 1QL . . . D 2 11.739 20.734 61.527 1 24.07 ? O1 1QL 2300 B 1 
HETATM 22 C C3 1QL . . . D 2 12.685 21.366 63.658 1 29.24 ? C3 1QL 2300 B 1 
HETATM 23 S S 1QL . . . D 2 12.101 22.421 66.126 1 34.12 ? S 1QL 2300 B 1 
HETATM 24 C C7 1QL . . . D 2 12.611 23.948 66.562 1 29.41 ? C7 1QL 2300 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           24 
#