data_1I2Z # _model_server_result.job_id CwrRGqv167-ZxmRZI96KzQ _model_server_result.datetime_utc '2025-03-01 04:08:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1I2Z # _exptl.entry_id 1I2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1I2Z _cell.length_a 79.58 _cell.length_b 79.58 _cell.length_c 323.39 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 39.79 68.918302 269.491667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 271 n n PA O2A NAD sing 272 n n PA O5B NAD sing 273 n n PA O3 NAD sing 274 n n O2A HOA2 NAD sing 275 n n O5B C5B NAD sing 276 n n C5B C4B NAD sing 277 n n C5B H51A NAD sing 278 n n C5B H52A NAD sing 279 n n C4B O4B NAD sing 280 n n C4B C3B NAD sing 281 n n C4B H4B NAD sing 282 n n O4B C1B NAD sing 283 n n C3B O3B NAD sing 284 n n C3B C2B NAD sing 285 n n C3B H3B NAD sing 286 n n O3B HO3A NAD sing 287 n n C2B O2B NAD sing 288 n n C2B C1B NAD sing 289 n n C2B H2B NAD sing 290 n n O2B HO2A NAD sing 291 n n C1B N9A NAD sing 292 n n C1B H1B NAD sing 293 n n N9A C8A NAD sing 294 n y N9A C4A NAD sing 295 n y C8A N7A NAD doub 296 n y C8A H8A NAD sing 297 n n N7A C5A NAD sing 298 n y C5A C6A NAD sing 299 n y C5A C4A NAD doub 300 n y C6A N6A NAD sing 301 n n C6A N1A NAD doub 302 n y N6A H61A NAD sing 303 n n N6A H62A NAD sing 304 n n N1A C2A NAD sing 305 n y C2A N3A NAD doub 306 n y C2A H2A NAD sing 307 n n N3A C4A NAD sing 308 n y O3 PN NAD sing 309 n n PN O1N NAD doub 310 n n PN O2N NAD sing 311 n n PN O5D NAD sing 312 n n O5D C5D NAD sing 313 n n C5D C4D NAD sing 314 n n C5D H51N NAD sing 315 n n C5D H52N NAD sing 316 n n C4D O4D NAD sing 317 n n C4D C3D NAD sing 318 n n C4D H4D NAD sing 319 n n O4D C1D NAD sing 320 n n C3D O3D NAD sing 321 n n C3D C2D NAD sing 322 n n C3D H3D NAD sing 323 n n O3D HO3N NAD sing 324 n n C2D O2D NAD sing 325 n n C2D C1D NAD sing 326 n n C2D H2D NAD sing 327 n n O2D HO2N NAD sing 328 n n C1D N1N NAD sing 329 n n C1D H1D NAD sing 330 n n N1N C2N NAD sing 331 n y N1N C6N NAD doub 332 n y C2N C3N NAD doub 333 n y C2N H2N NAD sing 334 n n C3N C7N NAD sing 335 n n C3N C4N NAD sing 336 n y C7N O7N NAD doub 337 n n C7N N7N NAD sing 338 n n N7N H71N NAD sing 339 n n N7N H72N NAD sing 340 n n C4N C5N NAD doub 341 n y C4N H4N NAD sing 342 n n C5N C6N NAD sing 343 n y C5N H5N NAD sing 344 n n C6N H6N NAD sing 345 n n # _atom_sites.entry_id 1I2Z _atom_sites.fract_transf_matrix[1][1] 0.01257 _atom_sites.fract_transf_matrix[1][2] 0.00725 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 501 501 NAD NAD . D 3 654 A 1 502 502 654 654 . E 2 NAD B 1 1501 1501 NAD NAD . F 3 654 B 1 1502 1502 654 654 . G 4 HOH A 1 2002 2002 HOH WAT . G 4 HOH A 2 2003 2003 HOH WAT . G 4 HOH A 3 2006 2006 HOH WAT . G 4 HOH A 4 2007 2007 HOH WAT . G 4 HOH A 5 2008 2008 HOH WAT . G 4 HOH A 6 2010 2010 HOH WAT . G 4 HOH A 7 2011 2011 HOH WAT . G 4 HOH A 8 2012 2012 HOH WAT . G 4 HOH A 9 2013 2013 HOH WAT . G 4 HOH A 10 2015 2015 HOH WAT . G 4 HOH A 11 2016 2016 HOH WAT . G 4 HOH A 12 2017 2017 HOH WAT . G 4 HOH A 13 2020 2020 HOH WAT . G 4 HOH A 14 2021 2021 HOH WAT . G 4 HOH A 15 2024 2024 HOH WAT . G 4 HOH A 16 2025 2025 HOH WAT . G 4 HOH A 17 2026 2026 HOH WAT . G 4 HOH A 18 2027 2027 HOH WAT . G 4 HOH A 19 2028 2028 HOH WAT . G 4 HOH A 20 2030 2030 HOH WAT . G 4 HOH A 21 2033 2033 HOH WAT . G 4 HOH A 22 2034 2034 HOH WAT . G 4 HOH A 23 2035 2035 HOH WAT . G 4 HOH A 24 2038 2038 HOH WAT . G 4 HOH A 25 2040 2040 HOH WAT . G 4 HOH A 26 2041 2041 HOH WAT . G 4 HOH A 27 2042 2042 HOH WAT . G 4 HOH A 28 2043 2043 HOH WAT . G 4 HOH A 29 2044 2044 HOH WAT . G 4 HOH A 30 2045 2045 HOH WAT . G 4 HOH A 31 2046 2046 HOH WAT . G 4 HOH A 32 2048 2048 HOH WAT . G 4 HOH A 33 2049 2049 HOH WAT . G 4 HOH A 34 2053 2053 HOH WAT . G 4 HOH A 35 2054 2054 HOH WAT . G 4 HOH A 36 2055 2055 HOH WAT . G 4 HOH A 37 2057 2057 HOH WAT . G 4 HOH A 38 2058 2058 HOH WAT . G 4 HOH A 39 2059 2059 HOH WAT . G 4 HOH A 40 2061 2061 HOH WAT . G 4 HOH A 41 2065 2065 HOH WAT . G 4 HOH A 42 2066 2066 HOH WAT . G 4 HOH A 43 2067 2067 HOH WAT . G 4 HOH A 44 2068 2068 HOH WAT . G 4 HOH A 45 2070 2070 HOH WAT . G 4 HOH A 46 2077 2077 HOH WAT . G 4 HOH A 47 2079 2079 HOH WAT . G 4 HOH A 48 2080 2080 HOH WAT . G 4 HOH A 49 2081 2081 HOH WAT . G 4 HOH A 50 2082 2082 HOH WAT . G 4 HOH A 51 2083 2083 HOH WAT . G 4 HOH A 52 2084 2084 HOH WAT . G 4 HOH A 53 2085 2085 HOH WAT . G 4 HOH A 54 2086 2086 HOH WAT . G 4 HOH A 55 2087 2087 HOH WAT . G 4 HOH A 56 2088 2088 HOH WAT . G 4 HOH A 57 2089 2089 HOH WAT . G 4 HOH A 58 2090 2090 HOH WAT . G 4 HOH A 59 2091 2091 HOH WAT . G 4 HOH A 60 2092 2092 HOH WAT . G 4 HOH A 61 2097 2097 HOH WAT . G 4 HOH A 62 2099 2099 HOH WAT . G 4 HOH A 63 2100 2100 HOH WAT . G 4 HOH A 64 2101 2101 HOH WAT . G 4 HOH A 65 2102 2102 HOH WAT . G 4 HOH A 66 2103 2103 HOH WAT . G 4 HOH A 67 2104 2104 HOH WAT . G 4 HOH A 68 2112 2112 HOH WAT . G 4 HOH A 69 2113 2113 HOH WAT . H 4 HOH B 1 2001 2001 HOH WAT . H 4 HOH B 2 2004 2004 HOH WAT . H 4 HOH B 3 2005 2005 HOH WAT . H 4 HOH B 4 2009 2009 HOH WAT . H 4 HOH B 5 2014 2014 HOH WAT . H 4 HOH B 6 2018 2018 HOH WAT . H 4 HOH B 7 2019 2019 HOH WAT . H 4 HOH B 8 2022 2022 HOH WAT . H 4 HOH B 9 2023 2023 HOH WAT . H 4 HOH B 10 2029 2029 HOH WAT . H 4 HOH B 11 2031 2031 HOH WAT . H 4 HOH B 12 2032 2032 HOH WAT . H 4 HOH B 13 2036 2036 HOH WAT . H 4 HOH B 14 2037 2037 HOH WAT . H 4 HOH B 15 2039 2039 HOH WAT . H 4 HOH B 16 2047 2047 HOH WAT . H 4 HOH B 17 2050 2050 HOH WAT . H 4 HOH B 18 2051 2051 HOH WAT . H 4 HOH B 19 2052 2052 HOH WAT . H 4 HOH B 20 2056 2056 HOH WAT . H 4 HOH B 21 2060 2060 HOH WAT . H 4 HOH B 22 2062 2062 HOH WAT . H 4 HOH B 23 2063 2063 HOH WAT . H 4 HOH B 24 2064 2064 HOH WAT . H 4 HOH B 25 2069 2069 HOH WAT . H 4 HOH B 26 2071 2071 HOH WAT . H 4 HOH B 27 2072 2072 HOH WAT . H 4 HOH B 28 2073 2073 HOH WAT . H 4 HOH B 29 2074 2074 HOH WAT . H 4 HOH B 30 2075 2075 HOH WAT . H 4 HOH B 31 2076 2076 HOH WAT . H 4 HOH B 32 2078 2078 HOH WAT . H 4 HOH B 33 2093 2093 HOH WAT . H 4 HOH B 34 2094 2094 HOH WAT . H 4 HOH B 35 2095 2095 HOH WAT . H 4 HOH B 36 2096 2096 HOH WAT . H 4 HOH B 37 2098 2098 HOH WAT . H 4 HOH B 38 2105 2105 HOH WAT . H 4 HOH B 39 2106 2106 HOH WAT . H 4 HOH B 40 2107 2107 HOH WAT . H 4 HOH B 41 2108 2108 HOH WAT . H 4 HOH B 42 2109 2109 HOH WAT . H 4 HOH B 43 2110 2110 HOH WAT . H 4 HOH B 44 2111 2111 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 6.379 16.087 134.988 1 37.02 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . C 2 5.224 15.195 134.68 1 36.17 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . C 2 7.775 15.663 134.777 1 32 ? O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . C 2 6.483 16.696 136.475 1 36.27 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . C 2 5.386 17.097 137.34 1 36.23 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . C 2 5.843 16.578 138.704 1 36.78 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . C 2 4.995 16.867 139.84 1 37.8 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . C 2 5.915 15.072 138.512 1 35.75 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . C 2 7.231 14.498 138.636 1 32.47 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . C 2 4.865 14.602 139.499 1 35.16 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . C 2 5.335 13.305 139.872 1 34.6 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . C 2 5.009 15.648 140.582 1 34.11 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . C 2 3.921 15.563 141.56 1 31.52 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . C 2 2.623 15.817 141.333 1 30.12 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . C 2 1.932 15.655 142.466 1 30.51 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . C 2 2.821 15.265 143.387 1 30.65 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . C 2 2.599 15.253 144.778 1 27.02 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . C 2 1.394 15.096 145.318 1 19.98 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . C 2 3.714 15.257 145.539 1 26.87 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . C 2 4.95 15.181 145.005 1 29.54 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . C 2 5.15 15.121 143.681 1 33.11 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . C 2 4.09 15.22 142.836 1 31.26 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . C 2 6.176 17.405 134.146 1 28.75 ? O3 NAD 501 A 1 HETATM 24 P PN NAD . . . C 2 6.923 18.792 134.194 1 23.23 ? PN NAD 501 A 1 HETATM 25 O O1N NAD . . . C 2 6.397 19.329 132.942 1 26.26 ? O1N NAD 501 A 1 HETATM 26 O O2N NAD . . . C 2 8.374 18.686 134.394 1 23.65 ? O2N NAD 501 A 1 HETATM 27 O O5D NAD . . . C 2 6.358 19.717 135.346 1 21.58 ? O5D NAD 501 A 1 HETATM 28 C C5D NAD . . . C 2 7.324 20.465 136.084 1 19.22 ? C5D NAD 501 A 1 HETATM 29 C C4D NAD . . . C 2 6.726 21.768 136.55 1 20.63 ? C4D NAD 501 A 1 HETATM 30 O O4D NAD . . . C 2 7.096 22.782 135.615 1 21.57 ? O4D NAD 501 A 1 HETATM 31 C C3D NAD . . . C 2 5.215 21.785 136.645 1 18.4 ? C3D NAD 501 A 1 HETATM 32 O O3D NAD . . . C 2 4.843 22.519 137.804 1 26.35 ? O3D NAD 501 A 1 HETATM 33 C C2D NAD . . . C 2 4.793 22.556 135.448 1 16.61 ? C2D NAD 501 A 1 HETATM 34 O O2D NAD . . . C 2 3.623 23.321 135.669 1 18.79 ? O2D NAD 501 A 1 HETATM 35 C C1D NAD . . . C 2 5.92 23.486 135.256 1 19.15 ? C1D NAD 501 A 1 HETATM 36 N N1N NAD . . . C 2 5.945 23.912 133.851 1 24.82 ? N1N NAD 501 A 1 HETATM 37 C C2N NAD . . . C 2 5.653 23.006 132.814 1 30.87 ? C2N NAD 501 A 1 HETATM 38 C C3N NAD . . . C 2 5.534 23.478 131.512 1 34.23 ? C3N NAD 501 A 1 HETATM 39 C C7N NAD . . . C 2 5.7 22.539 130.325 1 37.12 ? C7N NAD 501 A 1 HETATM 40 O O7N NAD . . . C 2 5.862 23.075 129.243 1 44.49 ? O7N NAD 501 A 1 HETATM 41 N N7N NAD . . . C 2 5.712 21.214 130.466 1 33.61 ? N7N NAD 501 A 1 HETATM 42 C C4N NAD . . . C 2 5.647 24.851 131.261 1 32.8 ? C4N NAD 501 A 1 HETATM 43 C C5N NAD . . . C 2 5.934 25.75 132.29 1 31.3 ? C5N NAD 501 A 1 HETATM 44 C C6N NAD . . . C 2 6.109 25.282 133.589 1 25.47 ? C6N NAD 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #