data_1I3F
#
_model_server_result.job_id            TTorJ26ryVReUhS6e-50ew 
_model_server_result.datetime_utc      '2025-04-18 17:34:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1i3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":106}' 
#
_entry.id    1I3F 
#
_exptl.entry_id    1I3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-2'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1I3F 
_cell.length_a            40.308 
_cell.length_b            46.886 
_cell.length_c            49.901 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1I3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc3 B CA CA . A CA 105 1_555 D O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc4 B CA CA . A CA 105 1_555 D O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc5 B CA CA . A CA 105 1_555 D O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                2GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-2'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2GP doub 1 n n 
P O2P 2GP sing 2 n n 
P O3P 2GP sing 3 n n 
P O2' 2GP sing 4 n n 
O2P HOP2 2GP sing 5 n n 
O3P HOP3 2GP sing 6 n n 
O5' C5' 2GP sing 7 n n 
O5' HO5' 2GP sing 8 n n 
C5' C4' 2GP sing 9 n n 
C5' "H5'1" 2GP sing 10 n n 
C5' "H5'2" 2GP sing 11 n n 
C4' O4' 2GP sing 12 n n 
C4' C3' 2GP sing 13 n n 
C4' H4' 2GP sing 14 n n 
O4' C1' 2GP sing 15 n n 
C3' O3' 2GP sing 16 n n 
C3' C2' 2GP sing 17 n n 
C3' H3' 2GP sing 18 n n 
O3' HO3' 2GP sing 19 n n 
C2' O2' 2GP sing 20 n n 
C2' C1' 2GP sing 21 n n 
C2' H2' 2GP sing 22 n n 
C1' N9 2GP sing 23 n n 
C1' H1' 2GP sing 24 n n 
N9 C8 2GP sing 25 n y 
N9 C4 2GP sing 26 n y 
C8 N7 2GP doub 27 n y 
C8 H8 2GP sing 28 n n 
N7 C5 2GP sing 29 n y 
C5 C6 2GP sing 30 n n 
C5 C4 2GP doub 31 n y 
C6 O6 2GP doub 32 n n 
C6 N1 2GP sing 33 n n 
N1 C2 2GP sing 34 n n 
N1 HN1 2GP sing 35 n n 
C2 N2 2GP sing 36 n n 
C2 N3 2GP doub 37 n n 
N2 HN21 2GP sing 38 n n 
N2 HN22 2GP sing 39 n n 
N3 C4 2GP sing 40 n n 
#
_atom_sites.entry_id                     1I3F 
_atom_sites.fract_transf_matrix[1][1]    0.024809 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 105 105 CA CA . 
C 3 2GP A 1 106 106 2GP 2GP . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 202 202 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 204 HOH HOH . 
D 4 HOH A 5 205 205 HOH HOH . 
D 4 HOH A 6 206 206 HOH HOH . 
D 4 HOH A 7 207 207 HOH HOH . 
D 4 HOH A 8 208 208 HOH HOH . 
D 4 HOH A 9 209 209 HOH HOH . 
D 4 HOH A 10 210 210 HOH HOH . 
D 4 HOH A 11 211 211 HOH HOH . 
D 4 HOH A 12 212 212 HOH HOH . 
D 4 HOH A 13 213 213 HOH HOH . 
D 4 HOH A 14 214 214 HOH HOH . 
D 4 HOH A 15 215 215 HOH HOH . 
D 4 HOH A 16 216 216 HOH HOH . 
D 4 HOH A 17 217 217 HOH HOH . 
D 4 HOH A 18 218 218 HOH HOH . 
D 4 HOH A 19 219 219 HOH HOH . 
D 4 HOH A 20 220 220 HOH HOH . 
D 4 HOH A 21 221 221 HOH HOH . 
D 4 HOH A 22 222 222 HOH HOH . 
D 4 HOH A 23 223 223 HOH HOH . 
D 4 HOH A 24 224 224 HOH HOH . 
D 4 HOH A 25 225 225 HOH HOH . 
D 4 HOH A 26 226 226 HOH HOH . 
D 4 HOH A 27 227 227 HOH HOH . 
D 4 HOH A 28 228 228 HOH HOH . 
D 4 HOH A 29 229 229 HOH HOH . 
D 4 HOH A 30 230 230 HOH HOH . 
D 4 HOH A 31 231 231 HOH HOH . 
D 4 HOH A 32 232 232 HOH HOH . 
D 4 HOH A 33 233 233 HOH HOH . 
D 4 HOH A 34 234 234 HOH HOH . 
D 4 HOH A 35 235 235 HOH HOH . 
D 4 HOH A 36 236 236 HOH HOH . 
D 4 HOH A 37 237 237 HOH HOH . 
D 4 HOH A 38 238 238 HOH HOH . 
D 4 HOH A 39 239 239 HOH HOH . 
D 4 HOH A 40 240 240 HOH HOH . 
D 4 HOH A 41 241 241 HOH HOH . 
D 4 HOH A 42 242 242 HOH HOH . 
D 4 HOH A 43 243 243 HOH HOH . 
D 4 HOH A 44 244 244 HOH HOH . 
D 4 HOH A 45 245 245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2GP . . . C 3 0.973 19.854 14.668 1 32.99 ? P 2GP 106 A 1 
HETATM 2 O O1P 2GP . . . C 3 2.079 20.799 14.89 1 19.08 ? O1P 2GP 106 A 1 
HETATM 3 O O2P 2GP . . . C 3 -0.166 20.417 13.904 1 53.44 ? O2P 2GP 106 A 1 
HETATM 4 O O3P 2GP . . . C 3 1.347 18.478 14.281 1 39.39 ? O3P 2GP 106 A 1 
HETATM 5 O O5' 2GP . . . C 3 -3.77 17.971 15.605 1 61.55 ? O5' 2GP 106 A 1 
HETATM 6 C C5' 2GP . . . C 3 -4.198 19.002 16.491 1 51.3 ? C5' 2GP 106 A 1 
HETATM 7 C C4' 2GP . . . C 3 -3.063 19.606 17.308 1 35.55 ? C4' 2GP 106 A 1 
HETATM 8 O O4' 2GP . . . C 3 -2.405 18.589 18.085 1 47.58 ? O4' 2GP 106 A 1 
HETATM 9 C C3' 2GP . . . C 3 -2.015 20.214 16.437 1 26.93 ? C3' 2GP 106 A 1 
HETATM 10 O O3' 2GP . . . C 3 -1.644 21.394 17.156 1 34.93 ? O3' 2GP 106 A 1 
HETATM 11 C C2' 2GP . . . C 3 -0.92 19.108 16.375 1 42.36 ? C2' 2GP 106 A 1 
HETATM 12 O O2' 2GP . . . C 3 0.395 19.657 16.155 1 18.35 ? O2' 2GP 106 A 1 
HETATM 13 C C1' 2GP . . . C 3 -0.995 18.555 17.771 1 43.37 ? C1' 2GP 106 A 1 
HETATM 14 N N9 2GP . . . C 3 -0.568 17.14 17.936 1 32.72 ? N9 2GP 106 A 1 
HETATM 15 C C8 2GP . . . C 3 0.212 16.641 18.953 1 14.97 ? C8 2GP 106 A 1 
HETATM 16 N N7 2GP . . . C 3 0.319 15.343 18.967 1 4.81 ? N7 2GP 106 A 1 
HETATM 17 C C5 2GP . . . C 3 -0.438 14.946 17.877 1 12.74 ? C5 2GP 106 A 1 
HETATM 18 C C6 2GP . . . C 3 -0.721 13.647 17.394 1 22.28 ? C6 2GP 106 A 1 
HETATM 19 O O6 2GP . . . C 3 -0.329 12.616 17.907 1 18.42 ? O6 2GP 106 A 1 
HETATM 20 N N1 2GP . . . C 3 -1.542 13.608 16.274 1 11.12 ? N1 2GP 106 A 1 
HETATM 21 C C2 2GP . . . C 3 -2.046 14.724 15.676 1 13.2 ? C2 2GP 106 A 1 
HETATM 22 N N2 2GP . . . C 3 -2.811 14.473 14.627 1 22.52 ? N2 2GP 106 A 1 
HETATM 23 N N3 2GP . . . C 3 -1.802 15.973 16.108 1 8.7 ? N3 2GP 106 A 1 
HETATM 24 C C4 2GP . . . C 3 -0.988 16.021 17.219 1 13.24 ? C4 2GP 106 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#