data_1I3G
#
_model_server_result.job_id            ETTlSTuCAVXSZjvxue5n2A 
_model_server_result.datetime_utc      '2024-10-11 11:16:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1i3g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    1I3G 
#
_exptl.entry_id    1I3G 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1I3G 
_cell.length_a            62.2 
_cell.length_b            62.2 
_cell.length_c            136.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1I3G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 L CYS 23 1_555 A SG CYS 91 L CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 B SG CYS 22 H CYS 23 1_555 B SG CYS 96 H CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     1I3G 
_atom_sites.fract_transf_matrix[1][1]    0.016077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016077 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MPD L 1 500 500 MPD MPD . 
D 4 HOH L 1 401 401 HOH HOH . 
D 4 HOH L 2 406 406 HOH HOH . 
D 4 HOH L 3 407 407 HOH HOH . 
D 4 HOH L 4 411 411 HOH HOH . 
D 4 HOH L 5 414 414 HOH HOH . 
D 4 HOH L 6 419 419 HOH HOH . 
D 4 HOH L 7 420 420 HOH HOH . 
D 4 HOH L 8 424 424 HOH HOH . 
D 4 HOH L 9 425 425 HOH HOH . 
D 4 HOH L 10 426 426 HOH HOH . 
D 4 HOH L 11 427 427 HOH HOH . 
D 4 HOH L 12 433 433 HOH HOH . 
D 4 HOH L 13 436 436 HOH HOH . 
D 4 HOH L 14 437 437 HOH HOH . 
D 4 HOH L 15 438 438 HOH HOH . 
D 4 HOH L 16 440 440 HOH HOH . 
D 4 HOH L 17 442 442 HOH HOH . 
D 4 HOH L 18 444 444 HOH HOH . 
D 4 HOH L 19 446 446 HOH HOH . 
D 4 HOH L 20 448 448 HOH HOH . 
D 4 HOH L 21 450 450 HOH HOH . 
D 4 HOH L 22 452 452 HOH HOH . 
D 4 HOH L 23 459 459 HOH HOH . 
D 4 HOH L 24 460 460 HOH HOH . 
D 4 HOH L 25 461 461 HOH HOH . 
D 4 HOH L 26 462 462 HOH HOH . 
D 4 HOH L 27 463 463 HOH HOH . 
D 4 HOH L 28 468 468 HOH HOH . 
D 4 HOH L 29 473 473 HOH HOH . 
D 4 HOH L 30 474 474 HOH HOH . 
E 4 HOH H 1 402 402 HOH HOH . 
E 4 HOH H 2 403 403 HOH HOH . 
E 4 HOH H 3 404 404 HOH HOH . 
E 4 HOH H 4 405 405 HOH HOH . 
E 4 HOH H 5 408 408 HOH HOH . 
E 4 HOH H 6 409 409 HOH HOH . 
E 4 HOH H 7 410 410 HOH HOH . 
E 4 HOH H 8 412 412 HOH HOH . 
E 4 HOH H 9 413 413 HOH HOH . 
E 4 HOH H 10 415 415 HOH HOH . 
E 4 HOH H 11 416 416 HOH HOH . 
E 4 HOH H 12 417 417 HOH HOH . 
E 4 HOH H 13 418 418 HOH HOH . 
E 4 HOH H 14 421 421 HOH HOH . 
E 4 HOH H 15 422 422 HOH HOH . 
E 4 HOH H 16 423 423 HOH HOH . 
E 4 HOH H 17 428 428 HOH HOH . 
E 4 HOH H 18 429 429 HOH HOH . 
E 4 HOH H 19 430 430 HOH HOH . 
E 4 HOH H 20 431 431 HOH HOH . 
E 4 HOH H 21 432 432 HOH HOH . 
E 4 HOH H 22 434 434 HOH HOH . 
E 4 HOH H 23 439 439 HOH HOH . 
E 4 HOH H 24 441 441 HOH HOH . 
E 4 HOH H 25 443 443 HOH HOH . 
E 4 HOH H 26 445 445 HOH HOH . 
E 4 HOH H 27 447 447 HOH HOH . 
E 4 HOH H 28 451 451 HOH HOH . 
E 4 HOH H 29 453 453 HOH HOH . 
E 4 HOH H 30 454 454 HOH HOH . 
E 4 HOH H 31 455 455 HOH HOH . 
E 4 HOH H 32 456 456 HOH HOH . 
E 4 HOH H 33 457 457 HOH HOH . 
E 4 HOH H 34 458 458 HOH HOH . 
E 4 HOH H 35 465 465 HOH HOH . 
E 4 HOH H 36 466 466 HOH HOH . 
E 4 HOH H 37 467 467 HOH HOH . 
E 4 HOH H 38 469 469 HOH HOH . 
E 4 HOH H 39 471 471 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 14.354 14.196 45.716 1 58.85 ? C1 MPD 500 L 1 
HETATM 2 C C2 MPD . . . C 3 13.734 12.908 46.228 1 52.96 ? C2 MPD 500 L 1 
HETATM 3 O O2 MPD . . . C 3 14.361 11.822 45.566 1 57.54 ? O2 MPD 500 L 1 
HETATM 4 C CM MPD . . . C 3 13.961 12.804 47.648 1 51.48 ? CM MPD 500 L 1 
HETATM 5 C C3 MPD . . . C 3 12.233 12.923 45.941 1 48.08 ? C3 MPD 500 L 1 
HETATM 6 C C4 MPD . . . C 3 11.818 11.865 44.898 1 47.1 ? C4 MPD 500 L 1 
HETATM 7 O O4 MPD . . . C 3 11.962 10.551 45.45 1 44.1 ? O4 MPD 500 L 1 
HETATM 8 C C5 MPD . . . C 3 10.375 12.107 44.574 1 51.74 ? C5 MPD 500 L 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#