data_1I3S # _model_server_result.job_id ZU9z_TitD8zuuGMpMQNo9g _model_server_result.datetime_utc '2025-03-05 02:06:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3137}' # _entry.id 1I3S # _exptl.entry_id 1I3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I3S _cell.length_a 77.608 _cell.length_b 89.303 _cell.length_c 136.099 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 136 A CYS 137 1_555 D S1 DTT . A DTT 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? covale ? covale2 B SG CYS 136 B CYS 137 1_555 E S1 DTT . B DTT 2137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale3 C SG CYS 136 C CYS 137 1_555 F S1 DTT . C DTT 3137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 1I3S _atom_sites.fract_transf_matrix[1][1] 0.012885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DTT A 1 1137 1137 DTT DTT . E 2 DTT B 1 2137 2137 DTT DTT . F 2 DTT C 1 3137 3137 DTT DTT . G 3 HOH A 1 303 303 HOH WAT . G 3 HOH A 2 312 312 HOH WAT . G 3 HOH A 3 313 313 HOH WAT . G 3 HOH A 4 314 314 HOH WAT . G 3 HOH A 5 315 315 HOH WAT . G 3 HOH A 6 316 316 HOH WAT . G 3 HOH A 7 321 321 HOH WAT . G 3 HOH A 8 338 338 HOH WAT . G 3 HOH A 9 342 342 HOH WAT . G 3 HOH A 10 343 343 HOH WAT . G 3 HOH A 11 356 356 HOH WAT . G 3 HOH A 12 357 357 HOH WAT . G 3 HOH A 13 360 360 HOH WAT . H 3 HOH B 1 301 301 HOH WAT . H 3 HOH B 2 304 304 HOH WAT . H 3 HOH B 3 306 306 HOH WAT . H 3 HOH B 4 307 307 HOH WAT . H 3 HOH B 5 310 310 HOH WAT . H 3 HOH B 6 317 317 HOH WAT . H 3 HOH B 7 322 322 HOH WAT . H 3 HOH B 8 325 325 HOH WAT . H 3 HOH B 9 326 326 HOH WAT . H 3 HOH B 10 329 329 HOH WAT . H 3 HOH B 11 332 332 HOH WAT . H 3 HOH B 12 333 333 HOH WAT . H 3 HOH B 13 334 334 HOH WAT . H 3 HOH B 14 336 336 HOH WAT . H 3 HOH B 15 337 337 HOH WAT . H 3 HOH B 16 339 339 HOH WAT . H 3 HOH B 17 341 341 HOH WAT . H 3 HOH B 18 344 344 HOH WAT . H 3 HOH B 19 345 345 HOH WAT . H 3 HOH B 20 346 346 HOH WAT . H 3 HOH B 21 348 348 HOH WAT . H 3 HOH B 22 349 349 HOH WAT . H 3 HOH B 23 350 350 HOH WAT . H 3 HOH B 24 351 351 HOH WAT . H 3 HOH B 25 354 354 HOH WAT . I 3 HOH C 1 302 302 HOH WAT . I 3 HOH C 2 305 305 HOH WAT . I 3 HOH C 3 309 309 HOH WAT . I 3 HOH C 4 311 311 HOH WAT . I 3 HOH C 5 319 319 HOH WAT . I 3 HOH C 6 323 323 HOH WAT . I 3 HOH C 7 324 324 HOH WAT . I 3 HOH C 8 330 330 HOH WAT . I 3 HOH C 9 331 331 HOH WAT . I 3 HOH C 10 340 340 HOH WAT . I 3 HOH C 11 347 347 HOH WAT . I 3 HOH C 12 352 352 HOH WAT . I 3 HOH C 13 353 353 HOH WAT . I 3 HOH C 14 355 355 HOH WAT . I 3 HOH C 15 358 358 HOH WAT . I 3 HOH C 16 359 359 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . F 2 27.244 31.363 15.817 1 72.14 ? S1 DTT 3137 C 1 HETATM 2 C C1 DTT . . . F 2 28.859 30.631 15.51 1 73.63 ? C1 DTT 3137 C 1 HETATM 3 C C2 DTT . . . F 2 28.796 29.18 14.911 1 76.11 ? C2 DTT 3137 C 1 HETATM 4 O O2 DTT . . . F 2 29.361 28.395 16.003 1 76.08 ? O2 DTT 3137 C 1 HETATM 5 C C3 DTT . . . F 2 29.645 28.951 13.556 1 77 ? C3 DTT 3137 C 1 HETATM 6 O O3 DTT . . . F 2 29.716 27.587 13.128 1 78.81 ? O3 DTT 3137 C 1 HETATM 7 C C4 DTT . . . F 2 29.1 29.701 12.344 1 78.04 ? C4 DTT 3137 C 1 HETATM 8 S S4 DTT . . . F 2 28.093 28.549 11.228 1 82 ? S4 DTT 3137 C 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #