data_1I44 # _model_server_result.job_id 7ybw3weU9FSpsawnA7mWog _model_server_result.datetime_utc '2024-12-23 08:39:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1I44 # _exptl.entry_id 1I44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I44 _cell.length_a 57.857 _cell.length_b 69.578 _cell.length_c 89.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O HOH . A HOH 114 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc2 D O HOH . A HOH 116 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 D O HOH . A HOH 121 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 C O2B ACP . A ACP 300 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 C O1G ACP . A ACP 300 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc6 B MG MG . A MG 301 1_555 A OD2 ASP 173 A ASP 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 B MG MG . A MG 301 1_555 A OD1 ASP 173 A ASP 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 1I44 _atom_sites.fract_transf_matrix[1][1] 0.017284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 ACP A 1 300 300 ACP ACP . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 15 15 HOH HOH . D 4 HOH A 16 16 16 HOH HOH . D 4 HOH A 17 17 17 HOH HOH . D 4 HOH A 18 18 18 HOH HOH . D 4 HOH A 19 19 19 HOH HOH . D 4 HOH A 20 20 20 HOH HOH . D 4 HOH A 21 21 21 HOH HOH . D 4 HOH A 22 22 22 HOH HOH . D 4 HOH A 23 23 23 HOH HOH . D 4 HOH A 24 24 24 HOH HOH . D 4 HOH A 25 25 25 HOH HOH . D 4 HOH A 26 26 26 HOH HOH . D 4 HOH A 27 27 27 HOH HOH . D 4 HOH A 28 28 28 HOH HOH . D 4 HOH A 29 29 29 HOH HOH . D 4 HOH A 30 30 30 HOH HOH . D 4 HOH A 31 31 31 HOH HOH . D 4 HOH A 32 32 32 HOH HOH . D 4 HOH A 33 33 33 HOH HOH . D 4 HOH A 34 34 34 HOH HOH . D 4 HOH A 35 35 35 HOH HOH . D 4 HOH A 36 36 36 HOH HOH . D 4 HOH A 37 37 37 HOH HOH . D 4 HOH A 38 38 38 HOH HOH . D 4 HOH A 39 39 39 HOH HOH . D 4 HOH A 40 40 40 HOH HOH . D 4 HOH A 41 41 41 HOH HOH . D 4 HOH A 42 42 42 HOH HOH . D 4 HOH A 43 43 43 HOH HOH . D 4 HOH A 44 44 44 HOH HOH . D 4 HOH A 45 45 45 HOH HOH . D 4 HOH A 46 46 46 HOH HOH . D 4 HOH A 47 47 47 HOH HOH . D 4 HOH A 48 48 48 HOH HOH . D 4 HOH A 49 49 49 HOH HOH . D 4 HOH A 50 50 50 HOH HOH . D 4 HOH A 51 51 51 HOH HOH . D 4 HOH A 52 52 52 HOH HOH . D 4 HOH A 53 53 53 HOH HOH . D 4 HOH A 54 54 54 HOH HOH . D 4 HOH A 55 55 55 HOH HOH . D 4 HOH A 56 56 56 HOH HOH . D 4 HOH A 57 57 57 HOH HOH . D 4 HOH A 58 58 58 HOH HOH . D 4 HOH A 59 59 59 HOH HOH . D 4 HOH A 60 60 60 HOH HOH . D 4 HOH A 61 61 61 HOH HOH . D 4 HOH A 62 62 62 HOH HOH . D 4 HOH A 63 63 63 HOH HOH . D 4 HOH A 64 64 64 HOH HOH . D 4 HOH A 65 65 65 HOH HOH . D 4 HOH A 66 66 66 HOH HOH . D 4 HOH A 67 67 67 HOH HOH . D 4 HOH A 68 68 68 HOH HOH . D 4 HOH A 69 69 69 HOH HOH . D 4 HOH A 70 70 70 HOH HOH . D 4 HOH A 71 71 71 HOH HOH . D 4 HOH A 72 72 72 HOH HOH . D 4 HOH A 73 73 73 HOH HOH . D 4 HOH A 74 74 74 HOH HOH . D 4 HOH A 75 75 75 HOH HOH . D 4 HOH A 76 76 76 HOH HOH . D 4 HOH A 77 77 77 HOH HOH . D 4 HOH A 78 78 78 HOH HOH . D 4 HOH A 79 79 79 HOH HOH . D 4 HOH A 80 80 80 HOH HOH . D 4 HOH A 81 81 81 HOH HOH . D 4 HOH A 82 82 82 HOH HOH . D 4 HOH A 83 83 83 HOH HOH . D 4 HOH A 84 84 84 HOH HOH . D 4 HOH A 85 85 85 HOH HOH . D 4 HOH A 86 86 86 HOH HOH . D 4 HOH A 87 87 87 HOH HOH . D 4 HOH A 88 88 88 HOH HOH . D 4 HOH A 89 89 89 HOH HOH . D 4 HOH A 90 90 90 HOH HOH . D 4 HOH A 91 91 91 HOH HOH . D 4 HOH A 92 92 92 HOH HOH . D 4 HOH A 93 93 93 HOH HOH . D 4 HOH A 94 94 94 HOH HOH . D 4 HOH A 95 95 95 HOH HOH . D 4 HOH A 96 96 96 HOH HOH . D 4 HOH A 97 97 97 HOH HOH . D 4 HOH A 98 98 98 HOH HOH . D 4 HOH A 99 99 99 HOH HOH . D 4 HOH A 100 100 100 HOH HOH . D 4 HOH A 101 101 101 HOH HOH . D 4 HOH A 102 102 102 HOH HOH . D 4 HOH A 103 103 103 HOH HOH . D 4 HOH A 104 104 104 HOH HOH . D 4 HOH A 105 105 105 HOH HOH . D 4 HOH A 106 106 106 HOH HOH . D 4 HOH A 107 107 107 HOH HOH . D 4 HOH A 108 108 108 HOH HOH . D 4 HOH A 109 109 109 HOH HOH . D 4 HOH A 110 110 110 HOH HOH . D 4 HOH A 111 111 111 HOH HOH . D 4 HOH A 112 112 112 HOH HOH . D 4 HOH A 113 113 113 HOH HOH . D 4 HOH A 114 114 114 HOH HOH . D 4 HOH A 115 115 115 HOH HOH . D 4 HOH A 116 116 116 HOH HOH . D 4 HOH A 117 117 117 HOH HOH . D 4 HOH A 118 118 118 HOH HOH . D 4 HOH A 119 119 119 HOH HOH . D 4 HOH A 120 120 120 HOH HOH . D 4 HOH A 121 121 121 HOH HOH . D 4 HOH A 122 122 122 HOH HOH . D 4 HOH A 123 123 123 HOH HOH . D 4 HOH A 124 124 124 HOH HOH . D 4 HOH A 125 125 125 HOH HOH . D 4 HOH A 126 126 126 HOH HOH . D 4 HOH A 127 127 127 HOH HOH . D 4 HOH A 128 128 128 HOH HOH . D 4 HOH A 129 129 129 HOH HOH . D 4 HOH A 130 130 130 HOH HOH . D 4 HOH A 131 131 131 HOH HOH . D 4 HOH A 132 132 132 HOH HOH . D 4 HOH A 133 133 133 HOH HOH . D 4 HOH A 134 134 134 HOH HOH . D 4 HOH A 135 135 135 HOH HOH . D 4 HOH A 136 136 136 HOH HOH . D 4 HOH A 137 137 137 HOH HOH . D 4 HOH A 138 138 138 HOH HOH . D 4 HOH A 139 139 139 HOH HOH . D 4 HOH A 140 140 140 HOH HOH . D 4 HOH A 141 141 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . C 3 16.448 24.266 19.934 1 41.7 ? PG ACP 300 A 1 HETATM 2 O O1G ACP . . . C 3 16.931 22.954 19.482 1 40.95 ? O1G ACP 300 A 1 HETATM 3 O O2G ACP . . . C 3 16.975 25.42 19.147 1 41.96 ? O2G ACP 300 A 1 HETATM 4 O O3G ACP . . . C 3 16.55 24.45 21.409 1 42.49 ? O3G ACP 300 A 1 HETATM 5 P PB ACP . . . C 3 13.909 24.73 18.179 1 36.01 ? PB ACP 300 A 1 HETATM 6 O O1B ACP . . . C 3 14.126 26.189 18.046 1 35.49 ? O1B ACP 300 A 1 HETATM 7 O O2B ACP . . . C 3 14.29 23.919 17.006 1 37.08 ? O2B ACP 300 A 1 HETATM 8 C C3B ACP . . . C 3 14.761 24.218 19.575 1 38.8 ? C3B ACP 300 A 1 HETATM 9 P PA ACP . . . C 3 11.548 23.242 18.57 1 33.01 ? PA ACP 300 A 1 HETATM 10 O O1A ACP . . . C 3 11.29 22.726 17.204 1 30.2 ? O1A ACP 300 A 1 HETATM 11 O O2A ACP . . . C 3 12.124 22.337 19.595 1 31.95 ? O2A ACP 300 A 1 HETATM 12 O O3A ACP . . . C 3 12.423 24.492 18.474 1 34.51 ? O3A ACP 300 A 1 HETATM 13 O O5' ACP . . . C 3 10.17 23.859 19.157 1 30.65 ? O5' ACP 300 A 1 HETATM 14 C C5' ACP . . . C 3 9.942 24.271 20.532 1 26.6 ? C5' ACP 300 A 1 HETATM 15 C C4' ACP . . . C 3 8.649 23.694 21.064 1 26.18 ? C4' ACP 300 A 1 HETATM 16 O O4' ACP . . . C 3 7.561 24.068 20.172 1 26.14 ? O4' ACP 300 A 1 HETATM 17 C C3' ACP . . . C 3 8.58 22.172 21.13 1 25.59 ? C3' ACP 300 A 1 HETATM 18 O O3' ACP . . . C 3 9.124 21.677 22.351 1 25.96 ? O3' ACP 300 A 1 HETATM 19 C C2' ACP . . . C 3 7.081 21.924 21.059 1 24.96 ? C2' ACP 300 A 1 HETATM 20 O O2' ACP . . . C 3 6.443 22.167 22.297 1 27.12 ? O2' ACP 300 A 1 HETATM 21 C C1' ACP . . . C 3 6.651 22.984 20.041 1 25.37 ? C1' ACP 300 A 1 HETATM 22 N N9 ACP . . . C 3 6.695 22.501 18.655 1 24.59 ? N9 ACP 300 A 1 HETATM 23 C C8 ACP . . . C 3 7.646 22.775 17.695 1 23.59 ? C8 ACP 300 A 1 HETATM 24 N N7 ACP . . . C 3 7.434 22.17 16.551 1 22.15 ? N7 ACP 300 A 1 HETATM 25 C C5 ACP . . . C 3 6.264 21.451 16.764 1 22.87 ? C5 ACP 300 A 1 HETATM 26 C C6 ACP . . . C 3 5.51 20.596 15.929 1 21.19 ? C6 ACP 300 A 1 HETATM 27 N N6 ACP . . . C 3 5.855 20.295 14.674 1 19.76 ? N6 ACP 300 A 1 HETATM 28 N N1 ACP . . . C 3 4.379 20.051 16.438 1 19.28 ? N1 ACP 300 A 1 HETATM 29 C C2 ACP . . . C 3 4.042 20.345 17.701 1 22.98 ? C2 ACP 300 A 1 HETATM 30 N N3 ACP . . . C 3 4.673 21.125 18.588 1 24.55 ? N3 ACP 300 A 1 HETATM 31 C C4 ACP . . . C 3 5.789 21.655 18.051 1 24.35 ? C4 ACP 300 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #