data_1I4D # _model_server_result.job_id 9FywftvYJsDA1J9oYV3Ebw _model_server_result.datetime_utc '2024-12-22 01:12:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1I4D # _exptl.entry_id 1I4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.51 _cell.angle_gamma 90 _cell.entry_id 1I4D _cell.length_a 63.566 _cell.length_b 47.462 _cell.length_c 125.311 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 17 D THR 17 1_555 D MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 E O3B GDP . D GDP 200 1_555 D MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1I4D _atom_sites.fract_transf_matrix[1][1] 0.015732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002074 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG D 1 201 201 MG MG . E 4 GDP D 1 200 200 GDP GDP . F 5 HOH A 1 246 3 HOH HOH . F 5 HOH A 2 247 7 HOH HOH . F 5 HOH A 3 248 13 HOH HOH . F 5 HOH A 4 249 15 HOH HOH . F 5 HOH A 5 250 16 HOH HOH . F 5 HOH A 6 251 17 HOH HOH . F 5 HOH A 7 252 18 HOH HOH . F 5 HOH A 8 253 22 HOH HOH . F 5 HOH A 9 254 24 HOH HOH . F 5 HOH A 10 255 31 HOH HOH . F 5 HOH A 11 256 38 HOH HOH . F 5 HOH A 12 257 43 HOH HOH . F 5 HOH A 13 258 47 HOH HOH . F 5 HOH A 14 259 51 HOH HOH . F 5 HOH A 15 260 54 HOH HOH . F 5 HOH A 16 261 56 HOH HOH . F 5 HOH A 17 262 59 HOH HOH . F 5 HOH A 18 263 60 HOH HOH . F 5 HOH A 19 264 66 HOH HOH . F 5 HOH A 20 265 68 HOH HOH . F 5 HOH A 21 266 75 HOH HOH . F 5 HOH A 22 267 77 HOH HOH . F 5 HOH A 23 268 78 HOH HOH . F 5 HOH A 24 269 80 HOH HOH . F 5 HOH A 25 270 83 HOH HOH . F 5 HOH A 26 271 84 HOH HOH . F 5 HOH A 27 272 89 HOH HOH . F 5 HOH A 28 273 96 HOH HOH . F 5 HOH A 29 274 99 HOH HOH . F 5 HOH A 30 275 103 HOH HOH . F 5 HOH A 31 276 104 HOH HOH . F 5 HOH A 32 277 109 HOH HOH . F 5 HOH A 33 278 112 HOH HOH . F 5 HOH A 34 279 119 HOH HOH . F 5 HOH A 35 280 121 HOH HOH . F 5 HOH A 36 281 123 HOH HOH . F 5 HOH A 37 282 126 HOH HOH . F 5 HOH A 38 283 128 HOH HOH . F 5 HOH A 39 284 136 HOH HOH . F 5 HOH A 40 285 138 HOH HOH . F 5 HOH A 41 286 139 HOH HOH . F 5 HOH A 42 287 148 HOH HOH . F 5 HOH A 43 288 150 HOH HOH . F 5 HOH A 44 289 152 HOH HOH . F 5 HOH A 45 290 156 HOH HOH . F 5 HOH A 46 291 157 HOH HOH . G 5 HOH B 1 246 1 HOH HOH . G 5 HOH B 2 247 2 HOH HOH . G 5 HOH B 3 248 6 HOH HOH . G 5 HOH B 4 249 8 HOH HOH . G 5 HOH B 5 250 12 HOH HOH . G 5 HOH B 6 251 19 HOH HOH . G 5 HOH B 7 252 26 HOH HOH . G 5 HOH B 8 253 28 HOH HOH . G 5 HOH B 9 254 29 HOH HOH . G 5 HOH B 10 255 30 HOH HOH . G 5 HOH B 11 256 32 HOH HOH . G 5 HOH B 12 257 33 HOH HOH . G 5 HOH B 13 258 34 HOH HOH . G 5 HOH B 14 259 35 HOH HOH . G 5 HOH B 15 260 44 HOH HOH . G 5 HOH B 16 261 48 HOH HOH . G 5 HOH B 17 262 49 HOH HOH . G 5 HOH B 18 263 58 HOH HOH . G 5 HOH B 19 264 61 HOH HOH . G 5 HOH B 20 265 65 HOH HOH . G 5 HOH B 21 266 69 HOH HOH . G 5 HOH B 22 267 70 HOH HOH . G 5 HOH B 23 268 71 HOH HOH . G 5 HOH B 24 269 79 HOH HOH . G 5 HOH B 25 270 87 HOH HOH . G 5 HOH B 26 271 88 HOH HOH . G 5 HOH B 27 272 91 HOH HOH . G 5 HOH B 28 273 93 HOH HOH . G 5 HOH B 29 274 94 HOH HOH . G 5 HOH B 30 275 101 HOH HOH . G 5 HOH B 31 276 106 HOH HOH . G 5 HOH B 32 277 108 HOH HOH . G 5 HOH B 33 278 110 HOH HOH . G 5 HOH B 34 279 114 HOH HOH . G 5 HOH B 35 280 115 HOH HOH . G 5 HOH B 36 281 116 HOH HOH . G 5 HOH B 37 282 117 HOH HOH . G 5 HOH B 38 283 118 HOH HOH . G 5 HOH B 39 284 120 HOH HOH . G 5 HOH B 40 285 124 HOH HOH . G 5 HOH B 41 286 125 HOH HOH . G 5 HOH B 42 287 127 HOH HOH . G 5 HOH B 43 288 129 HOH HOH . G 5 HOH B 44 289 130 HOH HOH . G 5 HOH B 45 290 132 HOH HOH . G 5 HOH B 46 291 135 HOH HOH . G 5 HOH B 47 292 141 HOH HOH . G 5 HOH B 48 293 144 HOH HOH . G 5 HOH B 49 294 147 HOH HOH . G 5 HOH B 50 295 149 HOH HOH . G 5 HOH B 51 296 154 HOH HOH . G 5 HOH B 52 297 155 HOH HOH . G 5 HOH B 53 298 158 HOH HOH . G 5 HOH B 54 299 159 HOH HOH . G 5 HOH B 55 300 160 HOH HOH . G 5 HOH B 56 301 161 HOH HOH . H 5 HOH D 1 202 4 HOH HOH . H 5 HOH D 2 203 5 HOH HOH . H 5 HOH D 3 204 10 HOH HOH . H 5 HOH D 4 205 11 HOH HOH . H 5 HOH D 5 206 14 HOH HOH . H 5 HOH D 6 207 20 HOH HOH . H 5 HOH D 7 208 21 HOH HOH . H 5 HOH D 8 209 23 HOH HOH . H 5 HOH D 9 210 25 HOH HOH . H 5 HOH D 10 211 36 HOH HOH . H 5 HOH D 11 212 37 HOH HOH . H 5 HOH D 12 213 39 HOH HOH . H 5 HOH D 13 214 40 HOH HOH . H 5 HOH D 14 215 42 HOH HOH . H 5 HOH D 15 216 45 HOH HOH . H 5 HOH D 16 217 46 HOH HOH . H 5 HOH D 17 218 50 HOH HOH . H 5 HOH D 18 219 52 HOH HOH . H 5 HOH D 19 220 53 HOH HOH . H 5 HOH D 20 221 55 HOH HOH . H 5 HOH D 21 222 57 HOH HOH . H 5 HOH D 22 223 62 HOH HOH . H 5 HOH D 23 224 63 HOH HOH . H 5 HOH D 24 225 67 HOH HOH . H 5 HOH D 25 226 72 HOH HOH . H 5 HOH D 26 227 74 HOH HOH . H 5 HOH D 27 228 76 HOH HOH . H 5 HOH D 28 229 82 HOH HOH . H 5 HOH D 29 230 85 HOH HOH . H 5 HOH D 30 231 86 HOH HOH . H 5 HOH D 31 232 90 HOH HOH . H 5 HOH D 32 233 95 HOH HOH . H 5 HOH D 33 234 97 HOH HOH . H 5 HOH D 34 235 98 HOH HOH . H 5 HOH D 35 236 100 HOH HOH . H 5 HOH D 36 237 102 HOH HOH . H 5 HOH D 37 238 111 HOH HOH . H 5 HOH D 38 239 113 HOH HOH . H 5 HOH D 39 240 122 HOH HOH . H 5 HOH D 40 241 133 HOH HOH . H 5 HOH D 41 242 134 HOH HOH . H 5 HOH D 42 243 140 HOH HOH . H 5 HOH D 43 244 142 HOH HOH . H 5 HOH D 44 245 143 HOH HOH . H 5 HOH D 45 246 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.793 _atom_site.Cartn_y 4.8 _atom_site.Cartn_z 51.522 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 542 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #