data_1I4T # _model_server_result.job_id 7ReA8m86Jx4xijq-U_ihVA _model_server_result.datetime_utc '2024-12-21 18:55:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1200}' # _entry.id 1I4T # _exptl.entry_id 1I4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I4T _cell.length_a 112.746 _cell.length_b 112.746 _cell.length_c 68.178 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 C,D,E,H 2 1 A,B,F,G 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -y+1,x,z+1/4 0 -1 0 1 0 0 0 0 1 112.746 0 17.0445 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 17 D THR 17 1_555 D MG MG . D MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc2 E O2G GNP . D GNP 1200 1_555 D MG MG . D MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 E O2B GNP . D GNP 1200 1_555 D MG MG . D MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1I4T _atom_sites.fract_transf_matrix[1][1] 0.008869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG D 1 1201 1201 MG MG . E 4 GNP D 1 1200 1200 GNP GNP . F 5 HOH A 1 246 1 HOH HOH . F 5 HOH A 2 247 2 HOH HOH . F 5 HOH A 3 248 3 HOH HOH . F 5 HOH A 4 249 4 HOH HOH . F 5 HOH A 5 250 5 HOH HOH . F 5 HOH A 6 251 6 HOH HOH . F 5 HOH A 7 252 8 HOH HOH . F 5 HOH A 8 253 9 HOH HOH . F 5 HOH A 9 254 11 HOH HOH . F 5 HOH A 10 255 12 HOH HOH . F 5 HOH A 11 256 14 HOH HOH . F 5 HOH A 12 257 15 HOH HOH . F 5 HOH A 13 258 18 HOH HOH . F 5 HOH A 14 259 19 HOH HOH . F 5 HOH A 15 260 21 HOH HOH . F 5 HOH A 16 261 24 HOH HOH . F 5 HOH A 17 262 25 HOH HOH . F 5 HOH A 18 263 26 HOH HOH . F 5 HOH A 19 264 27 HOH HOH . F 5 HOH A 20 265 28 HOH HOH . F 5 HOH A 21 266 29 HOH HOH . F 5 HOH A 22 267 31 HOH HOH . F 5 HOH A 23 268 34 HOH HOH . F 5 HOH A 24 269 35 HOH HOH . F 5 HOH A 25 270 36 HOH HOH . F 5 HOH A 26 271 37 HOH HOH . F 5 HOH A 27 272 39 HOH HOH . F 5 HOH A 28 273 41 HOH HOH . F 5 HOH A 29 274 43 HOH HOH . F 5 HOH A 30 275 44 HOH HOH . F 5 HOH A 31 276 46 HOH HOH . F 5 HOH A 32 277 47 HOH HOH . F 5 HOH A 33 278 49 HOH HOH . F 5 HOH A 34 279 50 HOH HOH . F 5 HOH A 35 280 51 HOH HOH . F 5 HOH A 36 281 52 HOH HOH . F 5 HOH A 37 282 55 HOH HOH . F 5 HOH A 38 283 56 HOH HOH . F 5 HOH A 39 284 58 HOH HOH . F 5 HOH A 40 285 59 HOH HOH . F 5 HOH A 41 286 60 HOH HOH . F 5 HOH A 42 287 63 HOH HOH . F 5 HOH A 43 288 64 HOH HOH . F 5 HOH A 44 289 69 HOH HOH . F 5 HOH A 45 290 71 HOH HOH . F 5 HOH A 46 291 72 HOH HOH . F 5 HOH A 47 292 73 HOH HOH . F 5 HOH A 48 293 79 HOH HOH . F 5 HOH A 49 294 86 HOH HOH . F 5 HOH A 50 295 88 HOH HOH . F 5 HOH A 51 296 95 HOH HOH . F 5 HOH A 52 297 98 HOH HOH . F 5 HOH A 53 298 99 HOH HOH . F 5 HOH A 54 299 103 HOH HOH . F 5 HOH A 55 300 105 HOH HOH . F 5 HOH A 56 301 109 HOH HOH . F 5 HOH A 57 302 110 HOH HOH . F 5 HOH A 58 303 113 HOH HOH . F 5 HOH A 59 304 117 HOH HOH . F 5 HOH A 60 305 118 HOH HOH . F 5 HOH A 61 306 119 HOH HOH . F 5 HOH A 62 307 123 HOH HOH . F 5 HOH A 63 308 125 HOH HOH . F 5 HOH A 64 309 128 HOH HOH . F 5 HOH A 65 310 130 HOH HOH . F 5 HOH A 66 311 136 HOH HOH . F 5 HOH A 67 312 137 HOH HOH . F 5 HOH A 68 313 140 HOH HOH . F 5 HOH A 69 314 146 HOH HOH . F 5 HOH A 70 315 147 HOH HOH . F 5 HOH A 71 316 148 HOH HOH . F 5 HOH A 72 317 152 HOH HOH . F 5 HOH A 73 318 153 HOH HOH . F 5 HOH A 74 319 160 HOH HOH . F 5 HOH A 75 320 164 HOH HOH . F 5 HOH A 76 321 171 HOH HOH . F 5 HOH A 77 322 172 HOH HOH . F 5 HOH A 78 323 174 HOH HOH . F 5 HOH A 79 324 176 HOH HOH . F 5 HOH A 80 325 180 HOH HOH . F 5 HOH A 81 326 182 HOH HOH . F 5 HOH A 82 327 185 HOH HOH . F 5 HOH A 83 328 186 HOH HOH . F 5 HOH A 84 329 188 HOH HOH . F 5 HOH A 85 330 189 HOH HOH . F 5 HOH A 86 331 192 HOH HOH . F 5 HOH A 87 332 194 HOH HOH . F 5 HOH A 88 333 198 HOH HOH . F 5 HOH A 89 334 204 HOH HOH . F 5 HOH A 90 335 205 HOH HOH . F 5 HOH A 91 336 208 HOH HOH . F 5 HOH A 92 337 213 HOH HOH . F 5 HOH A 93 338 217 HOH HOH . F 5 HOH A 94 339 221 HOH HOH . F 5 HOH A 95 340 222 HOH HOH . F 5 HOH A 96 341 232 HOH HOH . F 5 HOH A 97 342 234 HOH HOH . F 5 HOH A 98 343 236 HOH HOH . F 5 HOH A 99 344 238 HOH HOH . G 5 HOH B 1 246 7 HOH HOH . G 5 HOH B 2 247 10 HOH HOH . G 5 HOH B 3 248 17 HOH HOH . G 5 HOH B 4 249 20 HOH HOH . G 5 HOH B 5 250 23 HOH HOH . G 5 HOH B 6 251 30 HOH HOH . G 5 HOH B 7 252 33 HOH HOH . G 5 HOH B 8 253 40 HOH HOH . G 5 HOH B 9 254 42 HOH HOH . G 5 HOH B 10 255 48 HOH HOH . G 5 HOH B 11 256 54 HOH HOH . G 5 HOH B 12 257 57 HOH HOH . G 5 HOH B 13 258 61 HOH HOH . G 5 HOH B 14 259 65 HOH HOH . G 5 HOH B 15 260 76 HOH HOH . G 5 HOH B 16 261 78 HOH HOH . G 5 HOH B 17 262 80 HOH HOH . G 5 HOH B 18 263 82 HOH HOH . G 5 HOH B 19 264 84 HOH HOH . G 5 HOH B 20 265 87 HOH HOH . G 5 HOH B 21 266 89 HOH HOH . G 5 HOH B 22 267 100 HOH HOH . G 5 HOH B 23 268 102 HOH HOH . G 5 HOH B 24 269 104 HOH HOH . G 5 HOH B 25 270 108 HOH HOH . G 5 HOH B 26 271 112 HOH HOH . G 5 HOH B 27 272 115 HOH HOH . G 5 HOH B 28 273 127 HOH HOH . G 5 HOH B 29 274 135 HOH HOH . G 5 HOH B 30 275 158 HOH HOH . G 5 HOH B 31 276 161 HOH HOH . G 5 HOH B 32 277 163 HOH HOH . G 5 HOH B 33 278 166 HOH HOH . G 5 HOH B 34 279 173 HOH HOH . G 5 HOH B 35 280 177 HOH HOH . G 5 HOH B 36 281 178 HOH HOH . G 5 HOH B 37 282 181 HOH HOH . G 5 HOH B 38 283 191 HOH HOH . G 5 HOH B 39 284 193 HOH HOH . G 5 HOH B 40 285 196 HOH HOH . G 5 HOH B 41 286 200 HOH HOH . G 5 HOH B 42 287 209 HOH HOH . G 5 HOH B 43 288 215 HOH HOH . G 5 HOH B 44 289 220 HOH HOH . G 5 HOH B 45 290 228 HOH HOH . G 5 HOH B 46 291 235 HOH HOH . H 5 HOH D 1 1202 13 HOH HOH . H 5 HOH D 2 1203 38 HOH HOH . H 5 HOH D 3 1204 45 HOH HOH . H 5 HOH D 4 1205 53 HOH HOH . H 5 HOH D 5 1206 70 HOH HOH . H 5 HOH D 6 1207 77 HOH HOH . H 5 HOH D 7 1208 81 HOH HOH . H 5 HOH D 8 1209 85 HOH HOH . H 5 HOH D 9 1210 90 HOH HOH . H 5 HOH D 10 1211 92 HOH HOH . H 5 HOH D 11 1212 96 HOH HOH . H 5 HOH D 12 1213 97 HOH HOH . H 5 HOH D 13 1214 114 HOH HOH . H 5 HOH D 14 1215 120 HOH HOH . H 5 HOH D 15 1216 126 HOH HOH . H 5 HOH D 16 1217 131 HOH HOH . H 5 HOH D 17 1218 139 HOH HOH . H 5 HOH D 18 1219 170 HOH HOH . H 5 HOH D 19 1220 184 HOH HOH . H 5 HOH D 20 1221 197 HOH HOH . H 5 HOH D 21 1222 201 HOH HOH . H 5 HOH D 22 1223 202 HOH HOH . H 5 HOH D 23 1224 203 HOH HOH . H 5 HOH D 24 1225 211 HOH HOH . H 5 HOH D 25 1226 218 HOH HOH . H 5 HOH D 26 1227 223 HOH HOH . H 5 HOH D 27 1228 224 HOH HOH . H 5 HOH D 28 1229 225 HOH HOH . H 5 HOH D 29 1230 227 HOH HOH . H 5 HOH D 30 1231 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 4 23.591 51.3 8.664 1 53.62 ? PG GNP 1200 D 1 HETATM 2 O O1G GNP . . . E 4 22.777 51.265 9.894 1 52.52 ? O1G GNP 1200 D 1 HETATM 3 O O2G GNP . . . E 4 23.065 50.571 7.53 1 52.7 ? O2G GNP 1200 D 1 HETATM 4 O O3G GNP . . . E 4 23.608 52.777 8.329 1 55.09 ? O3G GNP 1200 D 1 HETATM 5 N N3B GNP . . . E 4 25.126 50.845 8.803 1 54.41 ? N3B GNP 1200 D 1 HETATM 6 P PB GNP . . . E 4 25.671 49.379 9.116 1 56.17 ? PB GNP 1200 D 1 HETATM 7 O O1B GNP . . . E 4 25.619 49.216 10.589 1 56.84 ? O1B GNP 1200 D 1 HETATM 8 O O2B GNP . . . E 4 24.915 48.386 8.307 1 56.32 ? O2B GNP 1200 D 1 HETATM 9 O O3A GNP . . . E 4 27.144 49.269 8.707 1 57.64 ? O3A GNP 1200 D 1 HETATM 10 P PA GNP . . . E 4 27.676 48.709 7.378 1 60.44 ? PA GNP 1200 D 1 HETATM 11 O O1A GNP . . . E 4 27.476 47.251 7.326 1 59.04 ? O1A GNP 1200 D 1 HETATM 12 O O2A GNP . . . E 4 27.183 49.499 6.226 1 61.17 ? O2A GNP 1200 D 1 HETATM 13 O O5' GNP . . . E 4 29.242 48.933 7.364 1 61.37 ? O5' GNP 1200 D 1 HETATM 14 C C5' GNP . . . E 4 29.79 50.246 7.497 1 61.81 ? C5' GNP 1200 D 1 HETATM 15 C C4' GNP . . . E 4 31.23 50.258 7.013 1 62.75 ? C4' GNP 1200 D 1 HETATM 16 O O4' GNP . . . E 4 32.008 49.416 7.893 1 62.28 ? O4' GNP 1200 D 1 HETATM 17 C C3' GNP . . . E 4 31.458 49.733 5.597 1 63.25 ? C3' GNP 1200 D 1 HETATM 18 O O3' GNP . . . E 4 32.331 50.61 4.88 1 64.08 ? O3' GNP 1200 D 1 HETATM 19 C C2' GNP . . . E 4 32.044 48.341 5.825 1 63.29 ? C2' GNP 1200 D 1 HETATM 20 O O2' GNP . . . E 4 32.936 47.922 4.816 1 63.6 ? O2' GNP 1200 D 1 HETATM 21 C C1' GNP . . . E 4 32.774 48.509 7.145 1 63.62 ? C1' GNP 1200 D 1 HETATM 22 N N9 GNP . . . E 4 32.765 47.293 7.935 1 65.45 ? N9 GNP 1200 D 1 HETATM 23 C C8 GNP . . . E 4 31.642 46.633 8.365 1 66.28 ? C8 GNP 1200 D 1 HETATM 24 N N7 GNP . . . E 4 31.902 45.563 9.061 1 67 ? N7 GNP 1200 D 1 HETATM 25 C C5 GNP . . . E 4 33.29 45.515 9.104 1 67.86 ? C5 GNP 1200 D 1 HETATM 26 C C6 GNP . . . E 4 34.151 44.575 9.73 1 68.75 ? C6 GNP 1200 D 1 HETATM 27 O O6 GNP . . . E 4 33.842 43.57 10.385 1 69.97 ? O6 GNP 1200 D 1 HETATM 28 N N1 GNP . . . E 4 35.494 44.884 9.537 1 68.37 ? N1 GNP 1200 D 1 HETATM 29 C C2 GNP . . . E 4 35.943 45.971 8.826 1 68.09 ? C2 GNP 1200 D 1 HETATM 30 N N2 GNP . . . E 4 37.27 46.107 8.745 1 67.43 ? N2 GNP 1200 D 1 HETATM 31 N N3 GNP . . . E 4 35.153 46.865 8.237 1 67.84 ? N3 GNP 1200 D 1 HETATM 32 C C4 GNP . . . E 4 33.838 46.576 8.415 1 67.19 ? C4 GNP 1200 D 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #