data_1I5Z # _model_server_result.job_id CVn4GVuvwVvzjycRQVAv-Q _model_server_result.datetime_utc '2024-10-12 14:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 1I5Z # _exptl.entry_id 1I5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I5Z _cell.length_a 46.028 _cell.length_b 93.024 _cell.length_c 105.503 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1I5Z _atom_sites.fract_transf_matrix[1][1] 0.021726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 351 351 TRS TRS . D 2 TRS A 1 352 352 TRS TRS . E 3 CMP A 1 301 301 CMP CMP . F 3 CMP A 1 302 302 CMP CMP . G 3 CMP B 1 401 401 CMP CMP . H 4 HOH A 1 501 501 HOH HOH . H 4 HOH A 2 502 502 HOH HOH . H 4 HOH A 3 503 503 HOH HOH . H 4 HOH A 4 509 509 HOH HOH . H 4 HOH A 5 513 513 HOH HOH . H 4 HOH A 6 518 518 HOH HOH . H 4 HOH A 7 526 526 HOH HOH . H 4 HOH A 8 527 527 HOH HOH . H 4 HOH A 9 528 528 HOH HOH . H 4 HOH A 10 538 538 HOH HOH . H 4 HOH A 11 541 541 HOH HOH . H 4 HOH A 12 543 543 HOH HOH . H 4 HOH A 13 544 544 HOH HOH . H 4 HOH A 14 551 551 HOH HOH . H 4 HOH A 15 553 553 HOH HOH . H 4 HOH A 16 554 554 HOH HOH . H 4 HOH A 17 557 557 HOH HOH . H 4 HOH A 18 561 561 HOH HOH . H 4 HOH A 19 562 562 HOH HOH . H 4 HOH A 20 563 563 HOH HOH . H 4 HOH A 21 564 564 HOH HOH . H 4 HOH A 22 568 568 HOH HOH . H 4 HOH A 23 569 569 HOH HOH . H 4 HOH A 24 573 573 HOH HOH . H 4 HOH A 25 575 575 HOH HOH . H 4 HOH A 26 576 576 HOH HOH . H 4 HOH A 27 577 577 HOH HOH . H 4 HOH A 28 578 578 HOH HOH . H 4 HOH A 29 581 581 HOH HOH . H 4 HOH A 30 582 582 HOH HOH . H 4 HOH A 31 584 584 HOH HOH . H 4 HOH A 32 588 588 HOH HOH . H 4 HOH A 33 591 591 HOH HOH . H 4 HOH A 34 592 592 HOH HOH . H 4 HOH A 35 594 594 HOH HOH . H 4 HOH A 36 595 595 HOH HOH . H 4 HOH A 37 596 596 HOH HOH . H 4 HOH A 38 597 597 HOH HOH . H 4 HOH A 39 598 598 HOH HOH . H 4 HOH A 40 600 600 HOH HOH . H 4 HOH A 41 602 602 HOH HOH . H 4 HOH A 42 603 603 HOH HOH . H 4 HOH A 43 605 605 HOH HOH . H 4 HOH A 44 606 606 HOH HOH . H 4 HOH A 45 608 608 HOH HOH . H 4 HOH A 46 609 609 HOH HOH . H 4 HOH A 47 610 610 HOH HOH . H 4 HOH A 48 611 611 HOH HOH . H 4 HOH A 49 612 612 HOH HOH . H 4 HOH A 50 613 613 HOH HOH . H 4 HOH A 51 614 614 HOH HOH . H 4 HOH A 52 616 616 HOH HOH . H 4 HOH A 53 619 619 HOH HOH . H 4 HOH A 54 620 620 HOH HOH . H 4 HOH A 55 621 621 HOH HOH . H 4 HOH A 56 622 622 HOH HOH . H 4 HOH A 57 623 623 HOH HOH . H 4 HOH A 58 625 625 HOH HOH . H 4 HOH A 59 626 626 HOH HOH . H 4 HOH A 60 627 627 HOH HOH . H 4 HOH A 61 629 629 HOH HOH . H 4 HOH A 62 630 630 HOH HOH . H 4 HOH A 63 631 631 HOH HOH . H 4 HOH A 64 632 632 HOH HOH . H 4 HOH A 65 635 635 HOH HOH . H 4 HOH A 66 639 639 HOH HOH . H 4 HOH A 67 641 641 HOH HOH . H 4 HOH A 68 642 642 HOH HOH . H 4 HOH A 69 643 643 HOH HOH . H 4 HOH A 70 644 644 HOH HOH . H 4 HOH A 71 645 645 HOH HOH . H 4 HOH A 72 647 647 HOH HOH . H 4 HOH A 73 648 648 HOH HOH . H 4 HOH A 74 649 649 HOH HOH . H 4 HOH A 75 650 650 HOH HOH . H 4 HOH A 76 652 652 HOH HOH . H 4 HOH A 77 654 654 HOH HOH . H 4 HOH A 78 655 655 HOH HOH . H 4 HOH A 79 656 656 HOH HOH . H 4 HOH A 80 659 659 HOH HOH . H 4 HOH A 81 661 661 HOH HOH . H 4 HOH A 82 666 666 HOH HOH . H 4 HOH A 83 667 667 HOH HOH . H 4 HOH A 84 671 671 HOH HOH . H 4 HOH A 85 672 672 HOH HOH . H 4 HOH A 86 675 675 HOH HOH . H 4 HOH A 87 676 676 HOH HOH . H 4 HOH A 88 678 678 HOH HOH . H 4 HOH A 89 683 683 HOH HOH . H 4 HOH A 90 687 687 HOH HOH . H 4 HOH A 91 688 688 HOH HOH . H 4 HOH A 92 689 689 HOH HOH . H 4 HOH A 93 697 697 HOH HOH . H 4 HOH A 94 701 701 HOH HOH . H 4 HOH A 95 702 702 HOH HOH . H 4 HOH A 96 703 703 HOH HOH . H 4 HOH A 97 704 704 HOH HOH . H 4 HOH A 98 705 705 HOH HOH . H 4 HOH A 99 710 710 HOH HOH . H 4 HOH A 100 711 711 HOH HOH . H 4 HOH A 101 712 712 HOH HOH . H 4 HOH A 102 713 713 HOH HOH . H 4 HOH A 103 717 717 HOH HOH . H 4 HOH A 104 719 719 HOH HOH . H 4 HOH A 105 725 725 HOH HOH . H 4 HOH A 106 729 729 HOH HOH . H 4 HOH A 107 733 733 HOH HOH . H 4 HOH A 108 735 735 HOH HOH . H 4 HOH A 109 736 736 HOH HOH . H 4 HOH A 110 737 737 HOH HOH . H 4 HOH A 111 738 738 HOH HOH . H 4 HOH A 112 739 739 HOH HOH . H 4 HOH A 113 741 741 HOH HOH . H 4 HOH A 114 743 743 HOH HOH . H 4 HOH A 115 745 745 HOH HOH . H 4 HOH A 116 746 746 HOH HOH . H 4 HOH A 117 748 748 HOH HOH . H 4 HOH A 118 750 750 HOH HOH . H 4 HOH A 119 751 751 HOH HOH . H 4 HOH A 120 753 753 HOH HOH . H 4 HOH A 121 756 756 HOH HOH . H 4 HOH A 122 761 761 HOH HOH . H 4 HOH A 123 764 764 HOH HOH . H 4 HOH A 124 765 765 HOH HOH . I 4 HOH B 1 504 504 HOH HOH . I 4 HOH B 2 505 505 HOH HOH . I 4 HOH B 3 506 506 HOH HOH . I 4 HOH B 4 507 507 HOH HOH . I 4 HOH B 5 508 508 HOH HOH . I 4 HOH B 6 510 510 HOH HOH . I 4 HOH B 7 511 511 HOH HOH . I 4 HOH B 8 512 512 HOH HOH . I 4 HOH B 9 514 514 HOH HOH . I 4 HOH B 10 515 515 HOH HOH . I 4 HOH B 11 516 516 HOH HOH . I 4 HOH B 12 517 517 HOH HOH . I 4 HOH B 13 519 519 HOH HOH . I 4 HOH B 14 520 520 HOH HOH . I 4 HOH B 15 521 521 HOH HOH . I 4 HOH B 16 522 522 HOH HOH . I 4 HOH B 17 523 523 HOH HOH . I 4 HOH B 18 524 524 HOH HOH . I 4 HOH B 19 525 525 HOH HOH . I 4 HOH B 20 529 529 HOH HOH . I 4 HOH B 21 530 530 HOH HOH . I 4 HOH B 22 531 531 HOH HOH . I 4 HOH B 23 532 532 HOH HOH . I 4 HOH B 24 533 533 HOH HOH . I 4 HOH B 25 534 534 HOH HOH . I 4 HOH B 26 535 535 HOH HOH . I 4 HOH B 27 536 536 HOH HOH . I 4 HOH B 28 537 537 HOH HOH . I 4 HOH B 29 539 539 HOH HOH . I 4 HOH B 30 540 540 HOH HOH . I 4 HOH B 31 542 542 HOH HOH . I 4 HOH B 32 545 545 HOH HOH . I 4 HOH B 33 546 546 HOH HOH . I 4 HOH B 34 547 547 HOH HOH . I 4 HOH B 35 548 548 HOH HOH . I 4 HOH B 36 549 549 HOH HOH . I 4 HOH B 37 550 550 HOH HOH . I 4 HOH B 38 552 552 HOH HOH . I 4 HOH B 39 555 555 HOH HOH . I 4 HOH B 40 556 556 HOH HOH . I 4 HOH B 41 558 558 HOH HOH . I 4 HOH B 42 559 559 HOH HOH . I 4 HOH B 43 560 560 HOH HOH . I 4 HOH B 44 565 565 HOH HOH . I 4 HOH B 45 566 566 HOH HOH . I 4 HOH B 46 567 567 HOH HOH . I 4 HOH B 47 570 570 HOH HOH . I 4 HOH B 48 571 571 HOH HOH . I 4 HOH B 49 572 572 HOH HOH . I 4 HOH B 50 574 574 HOH HOH . I 4 HOH B 51 579 579 HOH HOH . I 4 HOH B 52 580 580 HOH HOH . I 4 HOH B 53 583 583 HOH HOH . I 4 HOH B 54 585 585 HOH HOH . I 4 HOH B 55 586 586 HOH HOH . I 4 HOH B 56 587 587 HOH HOH . I 4 HOH B 57 589 589 HOH HOH . I 4 HOH B 58 590 590 HOH HOH . I 4 HOH B 59 593 593 HOH HOH . I 4 HOH B 60 599 599 HOH HOH . I 4 HOH B 61 601 601 HOH HOH . I 4 HOH B 62 604 604 HOH HOH . I 4 HOH B 63 607 607 HOH HOH . I 4 HOH B 64 615 615 HOH HOH . I 4 HOH B 65 617 617 HOH HOH . I 4 HOH B 66 618 618 HOH HOH . I 4 HOH B 67 624 624 HOH HOH . I 4 HOH B 68 628 628 HOH HOH . I 4 HOH B 69 633 633 HOH HOH . I 4 HOH B 70 634 634 HOH HOH . I 4 HOH B 71 636 636 HOH HOH . I 4 HOH B 72 637 637 HOH HOH . I 4 HOH B 73 638 638 HOH HOH . I 4 HOH B 74 640 640 HOH HOH . I 4 HOH B 75 646 646 HOH HOH . I 4 HOH B 76 651 651 HOH HOH . I 4 HOH B 77 653 653 HOH HOH . I 4 HOH B 78 657 657 HOH HOH . I 4 HOH B 79 658 658 HOH HOH . I 4 HOH B 80 660 660 HOH HOH . I 4 HOH B 81 662 662 HOH HOH . I 4 HOH B 82 663 663 HOH HOH . I 4 HOH B 83 664 664 HOH HOH . I 4 HOH B 84 665 665 HOH HOH . I 4 HOH B 85 668 668 HOH HOH . I 4 HOH B 86 669 669 HOH HOH . I 4 HOH B 87 670 670 HOH HOH . I 4 HOH B 88 673 673 HOH HOH . I 4 HOH B 89 674 674 HOH HOH . I 4 HOH B 90 679 679 HOH HOH . I 4 HOH B 91 680 680 HOH HOH . I 4 HOH B 92 681 681 HOH HOH . I 4 HOH B 93 682 682 HOH HOH . I 4 HOH B 94 684 684 HOH HOH . I 4 HOH B 95 685 685 HOH HOH . I 4 HOH B 96 686 686 HOH HOH . I 4 HOH B 97 690 690 HOH HOH . I 4 HOH B 98 691 691 HOH HOH . I 4 HOH B 99 692 692 HOH HOH . I 4 HOH B 100 695 695 HOH HOH . I 4 HOH B 101 696 696 HOH HOH . I 4 HOH B 102 698 698 HOH HOH . I 4 HOH B 103 706 706 HOH HOH . I 4 HOH B 104 708 708 HOH HOH . I 4 HOH B 105 709 709 HOH HOH . I 4 HOH B 106 714 714 HOH HOH . I 4 HOH B 107 715 715 HOH HOH . I 4 HOH B 108 716 716 HOH HOH . I 4 HOH B 109 718 718 HOH HOH . I 4 HOH B 110 720 720 HOH HOH . I 4 HOH B 111 722 722 HOH HOH . I 4 HOH B 112 726 726 HOH HOH . I 4 HOH B 113 727 727 HOH HOH . I 4 HOH B 114 728 728 HOH HOH . I 4 HOH B 115 731 731 HOH HOH . I 4 HOH B 116 732 732 HOH HOH . I 4 HOH B 117 734 734 HOH HOH . I 4 HOH B 118 740 740 HOH HOH . I 4 HOH B 119 744 744 HOH HOH . I 4 HOH B 120 747 747 HOH HOH . I 4 HOH B 121 749 749 HOH HOH . I 4 HOH B 122 752 752 HOH HOH . I 4 HOH B 123 755 755 HOH HOH . I 4 HOH B 124 758 758 HOH HOH . I 4 HOH B 125 759 759 HOH HOH . I 4 HOH B 126 760 760 HOH HOH . I 4 HOH B 127 763 763 HOH HOH . I 4 HOH B 128 766 766 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . G 3 18.017 43.068 44.68 1 20.73 ? P CMP 401 B 1 HETATM 2 O O1P CMP . . . G 3 18.896 44.123 44.103 1 21.57 ? O1P CMP 401 B 1 HETATM 3 O O2P CMP . . . G 3 16.955 43.454 45.627 1 23.16 ? O2P CMP 401 B 1 HETATM 4 O O5' CMP . . . G 3 17.246 42.462 43.361 1 20.52 ? O5' CMP 401 B 1 HETATM 5 C C5' CMP . . . G 3 17.577 41.22 42.66 1 24.65 ? C5' CMP 401 B 1 HETATM 6 C C4' CMP . . . G 3 18.74 40.357 43.243 1 20.83 ? C4' CMP 401 B 1 HETATM 7 O O4' CMP . . . G 3 19.742 39.973 42.352 1 21.58 ? O4' CMP 401 B 1 HETATM 8 C C3' CMP . . . G 3 19.556 41.097 44.247 1 20.64 ? C3' CMP 401 B 1 HETATM 9 O O3' CMP . . . G 3 18.837 41.802 45.263 1 20.45 ? O3' CMP 401 B 1 HETATM 10 C C2' CMP . . . G 3 20.525 40.072 44.596 1 21.39 ? C2' CMP 401 B 1 HETATM 11 O O2' CMP . . . G 3 19.958 39.096 45.461 1 20.55 ? O2' CMP 401 B 1 HETATM 12 C C1' CMP . . . G 3 20.723 39.377 43.232 1 21.25 ? C1' CMP 401 B 1 HETATM 13 N N9 CMP . . . G 3 22.063 39.74 42.703 1 20.8 ? N9 CMP 401 B 1 HETATM 14 C C8 CMP . . . G 3 22.44 40.927 42.085 1 21.86 ? C8 CMP 401 B 1 HETATM 15 N N7 CMP . . . G 3 23.693 40.994 41.723 1 21.04 ? N7 CMP 401 B 1 HETATM 16 C C5 CMP . . . G 3 24.2 39.778 42.119 1 20.92 ? C5 CMP 401 B 1 HETATM 17 C C6 CMP . . . G 3 25.496 39.214 42.023 1 21.47 ? C6 CMP 401 B 1 HETATM 18 N N6 CMP . . . G 3 26.51 39.882 41.461 1 20.12 ? N6 CMP 401 B 1 HETATM 19 N N1 CMP . . . G 3 25.695 37.95 42.522 1 22.63 ? N1 CMP 401 B 1 HETATM 20 C C2 CMP . . . G 3 24.648 37.297 43.081 1 21.56 ? C2 CMP 401 B 1 HETATM 21 N N3 CMP . . . G 3 23.375 37.717 43.235 1 19.2 ? N3 CMP 401 B 1 HETATM 22 C C4 CMP . . . G 3 23.215 38.99 42.723 1 20.39 ? C4 CMP 401 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #