data_1I6V
#
_model_server_result.job_id            jNkU1KvksIOW20WgKieDvA 
_model_server_result.datetime_utc      '2024-12-18 05:33:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1i6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1640}' 
#
_entry.id    1I6V 
#
_exptl.entry_id    1I6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              822.94 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIFAMPICIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1I6V 
_cell.length_a            199.45 
_cell.length_b            199.45 
_cell.length_c            289.13 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1I6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 934 D CYS 1194 1_555 D SG CYS 941 D CYS 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc1 D OD1 ASP 481 D ASP 741 1_555 G MG MG . D MG 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc2 D OD1 ASP 483 D ASP 743 1_555 G MG MG . D MG 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 D SG CYS 934 D CYS 1194 1_555 H ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc4 D SG CYS 941 D CYS 1201 1_555 H ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc5 D SG CYS 944 D CYS 1204 1_555 H ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C43 H58 N4 O12' 
_chem_comp.formula_weight    822.94 
_chem_comp.id                RFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIFAMPICIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RFP doub 275 n y 
C1 C9 RFP sing 276 n y 
C1 O1 RFP sing 277 n n 
C2 C3 RFP sing 278 n y 
C2 N1 RFP sing 279 n n 
C3 C4 RFP doub 280 n y 
C3 C43 RFP sing 281 n n 
C4 C10 RFP sing 282 n y 
C4 O12 RFP sing 283 n n 
C5 C6 RFP doub 284 n y 
C5 C10 RFP sing 285 n y 
C5 C11 RFP sing 286 n n 
C6 C7 RFP sing 287 n y 
C6 O3 RFP sing 288 n n 
C7 C8 RFP doub 289 n y 
C7 C14 RFP sing 290 n n 
C8 C9 RFP sing 291 n y 
C8 O2 RFP sing 292 n n 
C9 C10 RFP doub 293 n y 
C11 C12 RFP sing 294 n n 
C11 O4 RFP doub 295 n n 
C12 C13 RFP sing 296 n n 
C12 O3 RFP sing 297 n n 
C12 O5 RFP sing 298 n n 
C13 H131 RFP sing 299 n n 
C13 H132 RFP sing 300 n n 
C13 H133 RFP sing 301 n n 
C14 H141 RFP sing 302 n n 
C14 H142 RFP sing 303 n n 
C14 H143 RFP sing 304 n n 
C15 C16 RFP sing 305 n n 
C15 N1 RFP sing 306 n n 
C15 O11 RFP doub 307 n n 
C16 C17 RFP doub 308 z n 
C16 C30 RFP sing 309 n n 
C17 C18 RFP sing 310 n n 
C17 H17C RFP sing 311 n n 
C18 C19 RFP doub 312 e n 
C18 H18C RFP sing 313 n n 
C19 C20 RFP sing 314 n n 
C19 H19C RFP sing 315 n n 
C20 C21 RFP sing 316 n n 
C20 C31 RFP sing 317 n n 
C20 H20C RFP sing 318 n n 
C21 C22 RFP sing 319 n n 
C21 O10 RFP sing 320 n n 
C21 H211 RFP sing 321 n n 
C22 C23 RFP sing 322 n n 
C22 C32 RFP sing 323 n n 
C22 H22C RFP sing 324 n n 
C23 C24 RFP sing 325 n n 
C23 O9 RFP sing 326 n n 
C23 H23C RFP sing 327 n n 
C24 C25 RFP sing 328 n n 
C24 C33 RFP sing 329 n n 
C24 H24C RFP sing 330 n n 
C25 C26 RFP sing 331 n n 
C25 O7 RFP sing 332 n n 
C25 H25C RFP sing 333 n n 
C26 C27 RFP sing 334 n n 
C26 C34 RFP sing 335 n n 
C26 H26C RFP sing 336 n n 
C27 C28 RFP sing 337 n n 
C27 O6 RFP sing 338 n n 
C27 H27C RFP sing 339 n n 
C28 C29 RFP doub 340 e n 
C28 H28C RFP sing 341 n n 
C29 O5 RFP sing 342 n n 
C29 H29C RFP sing 343 n n 
C30 H301 RFP sing 344 n n 
C30 H302 RFP sing 345 n n 
C30 H303 RFP sing 346 n n 
C31 H311 RFP sing 347 n n 
C31 H312 RFP sing 348 n n 
C31 H313 RFP sing 349 n n 
C32 H321 RFP sing 350 n n 
C32 H322 RFP sing 351 n n 
C32 H323 RFP sing 352 n n 
C33 H331 RFP sing 353 n n 
C33 H332 RFP sing 354 n n 
C33 H333 RFP sing 355 n n 
C34 H341 RFP sing 356 n n 
C34 H342 RFP sing 357 n n 
C34 H343 RFP sing 358 n n 
C35 C36 RFP sing 359 n n 
C35 O7 RFP sing 360 n n 
C35 O8 RFP doub 361 n n 
C36 H361 RFP sing 362 n n 
C36 H362 RFP sing 363 n n 
C36 H363 RFP sing 364 n n 
C37 O6 RFP sing 365 n n 
C37 H371 RFP sing 366 n n 
C37 H372 RFP sing 367 n n 
C37 H373 RFP sing 368 n n 
C38 N4 RFP sing 369 n n 
C38 H381 RFP sing 370 n n 
C38 H382 RFP sing 371 n n 
C38 H383 RFP sing 372 n n 
C39 C40 RFP sing 373 n n 
C39 N4 RFP sing 374 n n 
C39 H391 RFP sing 375 n n 
C39 H392 RFP sing 376 n n 
C40 N3 RFP sing 377 n n 
C40 H401 RFP sing 378 n n 
C40 H402 RFP sing 379 n n 
C41 C42 RFP sing 380 n n 
C41 N3 RFP sing 381 n n 
C41 H411 RFP sing 382 n n 
C41 H412 RFP sing 383 n n 
C42 N4 RFP sing 384 n n 
C42 H421 RFP sing 385 n n 
C42 H422 RFP sing 386 n n 
C43 N2 RFP doub 387 e n 
C43 HC43 RFP sing 388 n n 
N1 HN1 RFP sing 389 n n 
N2 N3 RFP sing 390 n n 
O1 HO1 RFP sing 391 n n 
O2 HO2 RFP sing 392 n n 
O9 HO9 RFP sing 393 n n 
O10 H10O RFP sing 394 n n 
O12 H12O RFP sing 395 n n 
#
_atom_sites.entry_id                     1I6V 
_atom_sites.fract_transf_matrix[1][1]    0.005014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 RFP C 1 1640 1 RFP RFP . 
G 6 MG D 1 1600 1 MG MG . 
H 7 ZN D 1 1601 1 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RFP . . . F 5 48.535 97.571 24.909 1 48.44 ? C1 RFP 1640 C 1 
HETATM 2 C C2 RFP . . . F 5 48.385 96.576 25.931 1 48.44 ? C2 RFP 1640 C 1 
HETATM 3 C C3 RFP . . . F 5 49.457 95.732 26.315 1 48.44 ? C3 RFP 1640 C 1 
HETATM 4 C C4 RFP . . . F 5 50.74 95.963 25.789 1 48.44 ? C4 RFP 1640 C 1 
HETATM 5 C C5 RFP . . . F 5 52.255 97.183 24.089 1 48.44 ? C5 RFP 1640 C 1 
HETATM 6 C C6 RFP . . . F 5 52.329 98.184 23.066 1 48.44 ? C6 RFP 1640 C 1 
HETATM 7 C C7 RFP . . . F 5 51.324 99.013 22.634 1 48.44 ? C7 RFP 1640 C 1 
HETATM 8 C C8 RFP . . . F 5 50.01 98.822 23.251 1 48.44 ? C8 RFP 1640 C 1 
HETATM 9 C C9 RFP . . . F 5 49.837 97.769 24.323 1 48.44 ? C9 RFP 1640 C 1 
HETATM 10 C C10 RFP . . . F 5 50.953 96.931 24.77 1 48.44 ? C10 RFP 1640 C 1 
HETATM 11 C C11 RFP . . . F 5 53.514 96.552 24.129 1 48.44 ? C11 RFP 1640 C 1 
HETATM 12 C C12 RFP . . . F 5 54.396 97.19 23.105 1 48.44 ? C12 RFP 1640 C 1 
HETATM 13 C C13 RFP . . . F 5 55.661 97.778 23.665 1 48.44 ? C13 RFP 1640 C 1 
HETATM 14 C C14 RFP . . . F 5 51.493 100.052 21.561 1 48.44 ? C14 RFP 1640 C 1 
HETATM 15 C C15 RFP . . . F 5 46.186 97.136 26.97 1 48.44 ? C15 RFP 1640 C 1 
HETATM 16 C C16 RFP . . . F 5 44.95 96.432 27.462 1 48.44 ? C16 RFP 1640 C 1 
HETATM 17 C C17 RFP . . . F 5 44.29 95.43 26.775 1 48.44 ? C17 RFP 1640 C 1 
HETATM 18 C C18 RFP . . . F 5 44.591 94.823 25.453 1 48.44 ? C18 RFP 1640 C 1 
HETATM 19 C C19 RFP . . . F 5 43.975 93.708 25 1 48.44 ? C19 RFP 1640 C 1 
HETATM 20 C C20 RFP . . . F 5 44.608 92.418 24.492 1 48.44 ? C20 RFP 1640 C 1 
HETATM 21 C C21 RFP . . . F 5 45.584 92.657 23.331 1 48.44 ? C21 RFP 1640 C 1 
HETATM 22 C C22 RFP . . . F 5 46.563 91.517 22.975 1 48.44 ? C22 RFP 1640 C 1 
HETATM 23 C C23 RFP . . . F 5 47.602 91.868 21.9 1 48.44 ? C23 RFP 1640 C 1 
HETATM 24 C C24 RFP . . . F 5 49.044 92.222 22.338 1 48.44 ? C24 RFP 1640 C 1 
HETATM 25 C C25 RFP . . . F 5 49.802 92.855 21.145 1 48.44 ? C25 RFP 1640 C 1 
HETATM 26 C C26 RFP . . . F 5 50.807 93.988 21.507 1 48.44 ? C26 RFP 1640 C 1 
HETATM 27 C C27 RFP . . . F 5 51.788 94.29 20.347 1 48.44 ? C27 RFP 1640 C 1 
HETATM 28 C C28 RFP . . . F 5 52.908 95.313 20.658 1 48.44 ? C28 RFP 1640 C 1 
HETATM 29 C C29 RFP . . . F 5 53.811 95.149 21.637 1 48.44 ? C29 RFP 1640 C 1 
HETATM 30 C C30 RFP . . . F 5 44.502 96.928 28.818 1 48.44 ? C30 RFP 1640 C 1 
HETATM 31 C C31 RFP . . . F 5 45.276 91.766 25.727 1 48.44 ? C31 RFP 1640 C 1 
HETATM 32 C C32 RFP . . . F 5 45.824 90.223 22.532 1 48.44 ? C32 RFP 1640 C 1 
HETATM 33 C C33 RFP . . . F 5 49.817 91.008 22.892 1 48.44 ? C33 RFP 1640 C 1 
HETATM 34 C C34 RFP . . . F 5 49.995 95.193 21.899 1 48.44 ? C34 RFP 1640 C 1 
HETATM 35 C C35 RFP . . . F 5 49.896 91.28 19.314 1 48.44 ? C35 RFP 1640 C 1 
HETATM 36 C C36 RFP . . . F 5 50.711 90.24 18.695 1 48.44 ? C36 RFP 1640 C 1 
HETATM 37 C C37 RFP . . . F 5 51.509 94.202 17.934 1 48.44 ? C37 RFP 1640 C 1 
HETATM 38 C C38 RFP . . . F 5 46.437 89.991 30.793 1 48.44 ? C38 RFP 1640 C 1 
HETATM 39 C C39 RFP . . . F 5 48.361 91.198 29.811 1 48.44 ? C39 RFP 1640 C 1 
HETATM 40 C C40 RFP . . . F 5 48.909 92.576 29.465 1 48.44 ? C40 RFP 1640 C 1 
HETATM 41 C C41 RFP . . . F 5 46.669 93.51 29.331 1 48.44 ? C41 RFP 1640 C 1 
HETATM 42 C C42 RFP . . . F 5 46.063 92.158 29.654 1 48.44 ? C42 RFP 1640 C 1 
HETATM 43 C C43 RFP . . . F 5 49.289 94.561 27.183 1 48.44 ? C43 RFP 1640 C 1 
HETATM 44 N N1 RFP . . . F 5 47.096 96.286 26.473 1 48.44 ? N1 RFP 1640 C 1 
HETATM 45 N N2 RFP . . . F 5 48.294 94.494 28.016 1 48.44 ? N2 RFP 1640 C 1 
HETATM 46 N N3 RFP . . . F 5 47.948 93.29 28.636 1 48.44 ? N3 RFP 1640 C 1 
HETATM 47 N N4 RFP . . . F 5 47.003 91.327 30.489 1 48.44 ? N4 RFP 1640 C 1 
HETATM 48 O O1 RFP . . . F 5 47.471 98.266 24.488 1 48.44 ? O1 RFP 1640 C 1 
HETATM 49 O O2 RFP . . . F 5 49.006 99.538 22.893 1 48.44 ? O2 RFP 1640 C 1 
HETATM 50 O O3 RFP . . . F 5 53.573 98.238 22.501 1 48.44 ? O3 RFP 1640 C 1 
HETATM 51 O O4 RFP . . . F 5 53.974 95.598 24.821 1 48.44 ? O4 RFP 1640 C 1 
HETATM 52 O O5 RFP . . . F 5 54.773 96.192 22.056 1 48.44 ? O5 RFP 1640 C 1 
HETATM 53 O O6 RFP . . . F 5 50.986 94.738 19.186 1 48.44 ? O6 RFP 1640 C 1 
HETATM 54 O O7 RFP . . . F 5 50.469 91.795 20.428 1 48.44 ? O7 RFP 1640 C 1 
HETATM 55 O O8 RFP . . . F 5 48.856 91.664 18.913 1 48.44 ? O8 RFP 1640 C 1 
HETATM 56 O O9 RFP . . . F 5 47.161 92.98 21.083 1 48.44 ? O9 RFP 1640 C 1 
HETATM 57 O O10 RFP . . . F 5 44.756 92.982 22.212 1 48.44 ? O10 RFP 1640 C 1 
HETATM 58 O O11 RFP . . . F 5 46.29 98.343 27.047 1 48.44 ? O11 RFP 1640 C 1 
HETATM 59 O O12 RFP . . . F 5 51.732 95.163 26.318 1 48.44 ? O12 RFP 1640 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           59 
#