data_1I6X # _model_server_result.job_id t8e_hDvqo141MZxfJdWuFw _model_server_result.datetime_utc '2025-03-04 23:18:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 1I6X # _exptl.entry_id 1I6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I6X _cell.length_a 46.262 _cell.length_b 93.343 _cell.length_c 105.339 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1I6X _atom_sites.fract_transf_matrix[1][1] 0.021616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 351 351 TRS TRS . D 3 CMP A 1 301 301 CMP CMP . E 3 CMP A 1 302 302 CMP CMP . F 3 CMP B 1 401 401 CMP CMP . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 507 507 HOH HOH . G 4 HOH A 6 509 509 HOH HOH . G 4 HOH A 7 511 511 HOH HOH . G 4 HOH A 8 512 512 HOH HOH . G 4 HOH A 9 515 515 HOH HOH . G 4 HOH A 10 518 518 HOH HOH . G 4 HOH A 11 519 519 HOH HOH . G 4 HOH A 12 521 521 HOH HOH . G 4 HOH A 13 523 523 HOH HOH . G 4 HOH A 14 524 524 HOH HOH . G 4 HOH A 15 525 525 HOH HOH . G 4 HOH A 16 527 527 HOH HOH . G 4 HOH A 17 529 529 HOH HOH . G 4 HOH A 18 530 530 HOH HOH . G 4 HOH A 19 532 532 HOH HOH . G 4 HOH A 20 533 533 HOH HOH . G 4 HOH A 21 534 534 HOH HOH . G 4 HOH A 22 538 538 HOH HOH . G 4 HOH A 23 540 540 HOH HOH . G 4 HOH A 24 541 541 HOH HOH . G 4 HOH A 25 542 542 HOH HOH . G 4 HOH A 26 543 543 HOH HOH . G 4 HOH A 27 545 545 HOH HOH . G 4 HOH A 28 546 546 HOH HOH . G 4 HOH A 29 547 547 HOH HOH . G 4 HOH A 30 548 548 HOH HOH . G 4 HOH A 31 549 549 HOH HOH . G 4 HOH A 32 550 550 HOH HOH . G 4 HOH A 33 551 551 HOH HOH . G 4 HOH A 34 552 552 HOH HOH . G 4 HOH A 35 554 554 HOH HOH . G 4 HOH A 36 557 557 HOH HOH . G 4 HOH A 37 559 559 HOH HOH . G 4 HOH A 38 567 567 HOH HOH . G 4 HOH A 39 571 571 HOH HOH . G 4 HOH A 40 573 573 HOH HOH . G 4 HOH A 41 577 577 HOH HOH . G 4 HOH A 42 578 578 HOH HOH . G 4 HOH A 43 582 582 HOH HOH . G 4 HOH A 44 583 583 HOH HOH . G 4 HOH A 45 584 584 HOH HOH . G 4 HOH A 46 585 585 HOH HOH . H 4 HOH B 1 505 505 HOH HOH . H 4 HOH B 2 506 506 HOH HOH . H 4 HOH B 3 508 508 HOH HOH . H 4 HOH B 4 510 510 HOH HOH . H 4 HOH B 5 513 513 HOH HOH . H 4 HOH B 6 514 514 HOH HOH . H 4 HOH B 7 517 517 HOH HOH . H 4 HOH B 8 520 520 HOH HOH . H 4 HOH B 9 522 522 HOH HOH . H 4 HOH B 10 528 528 HOH HOH . H 4 HOH B 11 531 531 HOH HOH . H 4 HOH B 12 535 535 HOH HOH . H 4 HOH B 13 536 536 HOH HOH . H 4 HOH B 14 537 537 HOH HOH . H 4 HOH B 15 539 539 HOH HOH . H 4 HOH B 16 544 544 HOH HOH . H 4 HOH B 17 553 553 HOH HOH . H 4 HOH B 18 555 555 HOH HOH . H 4 HOH B 19 558 558 HOH HOH . H 4 HOH B 20 560 560 HOH HOH . H 4 HOH B 21 561 561 HOH HOH . H 4 HOH B 22 562 562 HOH HOH . H 4 HOH B 23 564 564 HOH HOH . H 4 HOH B 24 565 565 HOH HOH . H 4 HOH B 25 566 566 HOH HOH . H 4 HOH B 26 568 568 HOH HOH . H 4 HOH B 27 569 569 HOH HOH . H 4 HOH B 28 570 570 HOH HOH . H 4 HOH B 29 572 572 HOH HOH . H 4 HOH B 30 575 575 HOH HOH . H 4 HOH B 31 576 576 HOH HOH . H 4 HOH B 32 579 579 HOH HOH . H 4 HOH B 33 580 580 HOH HOH . H 4 HOH B 34 581 581 HOH HOH . H 4 HOH B 35 586 586 HOH HOH . H 4 HOH B 36 587 587 HOH HOH . H 4 HOH B 37 588 588 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 3 40.036 41.154 51.843 1 32.3 ? P CMP 301 A 1 HETATM 2 O O1P CMP . . . D 3 39.649 40.052 50.925 1 31.78 ? O1P CMP 301 A 1 HETATM 3 O O2P CMP . . . D 3 40.368 40.833 53.24 1 33.27 ? O2P CMP 301 A 1 HETATM 4 O O5' CMP . . . D 3 41.417 41.762 51.172 1 31.34 ? O5' CMP 301 A 1 HETATM 5 C C5' CMP . . . D 3 41.529 43.024 50.408 1 34.08 ? C5' CMP 301 A 1 HETATM 6 C C4' CMP . . . D 3 40.233 43.899 50.248 1 34.07 ? C4' CMP 301 A 1 HETATM 7 O O4' CMP . . . D 3 39.927 44.358 48.94 1 31.5 ? O4' CMP 301 A 1 HETATM 8 C C3' CMP . . . D 3 39.003 43.116 50.565 1 34.85 ? C3' CMP 301 A 1 HETATM 9 O O3' CMP . . . D 3 39.01 42.404 51.815 1 35.07 ? O3' CMP 301 A 1 HETATM 10 C C2' CMP . . . D 3 37.966 44.104 50.272 1 35.36 ? C2' CMP 301 A 1 HETATM 11 O O2' CMP . . . D 3 37.826 45.035 51.337 1 32.92 ? O2' CMP 301 A 1 HETATM 12 C C1' CMP . . . D 3 38.583 44.872 49.08 1 32.47 ? C1' CMP 301 A 1 HETATM 13 N N9 CMP . . . D 3 37.843 44.511 47.838 1 32.26 ? N9 CMP 301 A 1 HETATM 14 C C8 CMP . . . D 3 37.937 43.328 47.11 1 27.45 ? C8 CMP 301 A 1 HETATM 15 N N7 CMP . . . D 3 37.169 43.253 46.068 1 31.33 ? N7 CMP 301 A 1 HETATM 16 C C5 CMP . . . D 3 36.503 44.469 46.078 1 31.05 ? C5 CMP 301 A 1 HETATM 17 C C6 CMP . . . D 3 35.522 45.031 45.22 1 34.7 ? C6 CMP 301 A 1 HETATM 18 N N6 CMP . . . D 3 35.055 44.378 44.155 1 34.68 ? N6 CMP 301 A 1 HETATM 19 N N1 CMP . . . D 3 35.048 46.28 45.503 1 36.57 ? N1 CMP 301 A 1 HETATM 20 C C2 CMP . . . D 3 35.534 46.919 46.588 1 34.7 ? C2 CMP 301 A 1 HETATM 21 N N3 CMP . . . D 3 36.454 46.503 47.474 1 32.9 ? N3 CMP 301 A 1 HETATM 22 C C4 CMP . . . D 3 36.907 45.25 47.158 1 31.51 ? C4 CMP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 512 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #