data_1I72 # _model_server_result.job_id BuQnc3Fnw05dtWmLS_gqCQ _model_server_result.datetime_utc '2024-11-24 11:46:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":350}' # _entry.id 1I72 # _exptl.entry_id 1I72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.28 _cell.angle_gamma 90 _cell.entry_id 1I72 _cell.length_a 100.473 _cell.length_b 50.833 _cell.length_c 68.904 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.158708 0 66.468207 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 B CA PYR 1 A PYR 68 1_555 C N MAO . A MAO 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 324 n n N2 HN21 PUT sing 325 n n N2 HN22 PUT sing 326 n n C4 C3 PUT sing 327 n n C4 H41 PUT sing 328 n n C4 H42 PUT sing 329 n n C3 C2 PUT sing 330 n n C3 H31 PUT sing 331 n n C3 H32 PUT sing 332 n n C2 C1 PUT sing 333 n n C2 H21 PUT sing 334 n n C2 H22 PUT sing 335 n n C1 N1 PUT sing 336 n n C1 H11 PUT sing 337 n n C1 H12 PUT sing 338 n n N1 HN11 PUT sing 339 n n N1 HN12 PUT sing 340 n n # _atom_sites.entry_id 1I72 _atom_sites.fract_transf_matrix[1][1] 0.009953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00272 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAO A 1 368 68 MAO MAO . D 4 PUT A 1 350 350 PUT PUT . E 5 HOH B 1 405 405 HOH HOH . E 5 HOH B 2 410 410 HOH HOH . E 5 HOH B 3 418 418 HOH HOH . E 5 HOH B 4 419 419 HOH HOH . E 5 HOH B 5 420 420 HOH HOH . E 5 HOH B 6 422 422 HOH HOH . E 5 HOH B 7 425 425 HOH HOH . E 5 HOH B 8 428 428 HOH HOH . E 5 HOH B 9 431 431 HOH HOH . E 5 HOH B 10 432 432 HOH HOH . E 5 HOH B 11 436 436 HOH HOH . E 5 HOH B 12 440 440 HOH HOH . E 5 HOH B 13 443 443 HOH HOH . E 5 HOH B 14 444 444 HOH HOH . E 5 HOH B 15 447 447 HOH HOH . E 5 HOH B 16 451 451 HOH HOH . E 5 HOH B 17 456 456 HOH HOH . E 5 HOH B 18 468 468 HOH HOH . E 5 HOH B 19 470 470 HOH HOH . E 5 HOH B 20 475 475 HOH HOH . E 5 HOH B 21 477 477 HOH HOH . E 5 HOH B 22 483 483 HOH HOH . E 5 HOH B 23 485 485 HOH HOH . E 5 HOH B 24 491 491 HOH HOH . E 5 HOH B 25 497 497 HOH HOH . E 5 HOH B 26 498 498 HOH HOH . E 5 HOH B 27 501 501 HOH HOH . E 5 HOH B 28 504 504 HOH HOH . E 5 HOH B 29 508 508 HOH HOH . E 5 HOH B 30 509 509 HOH HOH . E 5 HOH B 31 510 510 HOH HOH . E 5 HOH B 32 511 511 HOH HOH . E 5 HOH B 33 516 516 HOH HOH . E 5 HOH B 34 517 517 HOH HOH . E 5 HOH B 35 518 518 HOH HOH . E 5 HOH B 36 519 519 HOH HOH . E 5 HOH B 37 526 526 HOH HOH . E 5 HOH B 38 535 535 HOH HOH . E 5 HOH B 39 545 545 HOH HOH . E 5 HOH B 40 547 547 HOH HOH . E 5 HOH B 41 548 548 HOH HOH . E 5 HOH B 42 555 555 HOH HOH . E 5 HOH B 43 557 557 HOH HOH . E 5 HOH B 44 571 571 HOH HOH . E 5 HOH B 45 579 579 HOH HOH . E 5 HOH B 46 580 580 HOH HOH . E 5 HOH B 47 581 581 HOH HOH . E 5 HOH B 48 582 582 HOH HOH . E 5 HOH B 49 583 583 HOH HOH . E 5 HOH B 50 585 585 HOH HOH . E 5 HOH B 51 591 591 HOH HOH . E 5 HOH B 52 597 597 HOH HOH . E 5 HOH B 53 598 598 HOH HOH . E 5 HOH B 54 602 602 HOH HOH . E 5 HOH B 55 607 607 HOH HOH . E 5 HOH B 56 610 610 HOH HOH . E 5 HOH B 57 611 611 HOH HOH . E 5 HOH B 58 624 624 HOH HOH . E 5 HOH B 59 630 630 HOH HOH . E 5 HOH B 60 634 634 HOH HOH . E 5 HOH B 61 637 637 HOH HOH . E 5 HOH B 62 640 640 HOH HOH . E 5 HOH B 63 641 641 HOH HOH . E 5 HOH B 64 643 643 HOH HOH . E 5 HOH B 65 647 647 HOH HOH . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 406 406 HOH HOH . F 5 HOH A 6 407 407 HOH HOH . F 5 HOH A 7 408 408 HOH HOH . F 5 HOH A 8 409 409 HOH HOH . F 5 HOH A 9 411 411 HOH HOH . F 5 HOH A 10 412 412 HOH HOH . F 5 HOH A 11 413 413 HOH HOH . F 5 HOH A 12 414 414 HOH HOH . F 5 HOH A 13 415 415 HOH HOH . F 5 HOH A 14 416 416 HOH HOH . F 5 HOH A 15 417 417 HOH HOH . F 5 HOH A 16 421 421 HOH HOH . F 5 HOH A 17 423 423 HOH HOH . F 5 HOH A 18 424 424 HOH HOH . F 5 HOH A 19 426 426 HOH HOH . F 5 HOH A 20 427 427 HOH HOH . F 5 HOH A 21 429 429 HOH HOH . F 5 HOH A 22 430 430 HOH HOH . F 5 HOH A 23 433 433 HOH HOH . F 5 HOH A 24 434 434 HOH HOH . F 5 HOH A 25 435 435 HOH HOH . F 5 HOH A 26 437 437 HOH HOH . F 5 HOH A 27 438 438 HOH HOH . F 5 HOH A 28 439 439 HOH HOH . F 5 HOH A 29 441 441 HOH HOH . F 5 HOH A 30 442 442 HOH HOH . F 5 HOH A 31 445 445 HOH HOH . F 5 HOH A 32 446 446 HOH HOH . F 5 HOH A 33 448 448 HOH HOH . F 5 HOH A 34 449 449 HOH HOH . F 5 HOH A 35 450 450 HOH HOH . F 5 HOH A 36 452 452 HOH HOH . F 5 HOH A 37 453 453 HOH HOH . F 5 HOH A 38 454 454 HOH HOH . F 5 HOH A 39 455 455 HOH HOH . F 5 HOH A 40 457 457 HOH HOH . F 5 HOH A 41 458 458 HOH HOH . F 5 HOH A 42 459 459 HOH HOH . F 5 HOH A 43 460 460 HOH HOH . F 5 HOH A 44 461 461 HOH HOH . F 5 HOH A 45 462 462 HOH HOH . F 5 HOH A 46 463 463 HOH HOH . F 5 HOH A 47 464 464 HOH HOH . F 5 HOH A 48 465 465 HOH HOH . F 5 HOH A 49 466 466 HOH HOH . F 5 HOH A 50 467 467 HOH HOH . F 5 HOH A 51 469 469 HOH HOH . F 5 HOH A 52 471 471 HOH HOH . F 5 HOH A 53 472 472 HOH HOH . F 5 HOH A 54 473 473 HOH HOH . F 5 HOH A 55 474 474 HOH HOH . F 5 HOH A 56 476 476 HOH HOH . F 5 HOH A 57 478 478 HOH HOH . F 5 HOH A 58 479 479 HOH HOH . F 5 HOH A 59 480 480 HOH HOH . F 5 HOH A 60 481 481 HOH HOH . F 5 HOH A 61 482 482 HOH HOH . F 5 HOH A 62 484 484 HOH HOH . F 5 HOH A 63 486 486 HOH HOH . F 5 HOH A 64 487 487 HOH HOH . F 5 HOH A 65 488 488 HOH HOH . F 5 HOH A 66 489 489 HOH HOH . F 5 HOH A 67 490 490 HOH HOH . F 5 HOH A 68 492 492 HOH HOH . F 5 HOH A 69 493 493 HOH HOH . F 5 HOH A 70 494 494 HOH HOH . F 5 HOH A 71 495 495 HOH HOH . F 5 HOH A 72 496 496 HOH HOH . F 5 HOH A 73 499 499 HOH HOH . F 5 HOH A 74 500 500 HOH HOH . F 5 HOH A 75 502 502 HOH HOH . F 5 HOH A 76 503 503 HOH HOH . F 5 HOH A 77 505 505 HOH HOH . F 5 HOH A 78 506 506 HOH HOH . F 5 HOH A 79 507 507 HOH HOH . F 5 HOH A 80 512 512 HOH HOH . F 5 HOH A 81 513 513 HOH HOH . F 5 HOH A 82 514 514 HOH HOH . F 5 HOH A 83 515 515 HOH HOH . F 5 HOH A 84 520 520 HOH HOH . F 5 HOH A 85 521 521 HOH HOH . F 5 HOH A 86 522 522 HOH HOH . F 5 HOH A 87 523 523 HOH HOH . F 5 HOH A 88 524 524 HOH HOH . F 5 HOH A 89 525 525 HOH HOH . F 5 HOH A 90 527 527 HOH HOH . F 5 HOH A 91 528 528 HOH HOH . F 5 HOH A 92 529 529 HOH HOH . F 5 HOH A 93 530 530 HOH HOH . F 5 HOH A 94 531 531 HOH HOH . F 5 HOH A 95 532 532 HOH HOH . F 5 HOH A 96 533 533 HOH HOH . F 5 HOH A 97 534 534 HOH HOH . F 5 HOH A 98 536 536 HOH HOH . F 5 HOH A 99 537 537 HOH HOH . F 5 HOH A 100 538 538 HOH HOH . F 5 HOH A 101 539 539 HOH HOH . F 5 HOH A 102 540 540 HOH HOH . F 5 HOH A 103 541 541 HOH HOH . F 5 HOH A 104 542 542 HOH HOH . F 5 HOH A 105 543 543 HOH HOH . F 5 HOH A 106 544 544 HOH HOH . F 5 HOH A 107 546 546 HOH HOH . F 5 HOH A 108 549 549 HOH HOH . F 5 HOH A 109 550 550 HOH HOH . F 5 HOH A 110 551 551 HOH HOH . F 5 HOH A 111 552 552 HOH HOH . F 5 HOH A 112 553 553 HOH HOH . F 5 HOH A 113 554 554 HOH HOH . F 5 HOH A 114 556 556 HOH HOH . F 5 HOH A 115 558 558 HOH HOH . F 5 HOH A 116 559 559 HOH HOH . F 5 HOH A 117 560 560 HOH HOH . F 5 HOH A 118 561 561 HOH HOH . F 5 HOH A 119 562 562 HOH HOH . F 5 HOH A 120 563 563 HOH HOH . F 5 HOH A 121 564 564 HOH HOH . F 5 HOH A 122 565 565 HOH HOH . F 5 HOH A 123 566 566 HOH HOH . F 5 HOH A 124 567 567 HOH HOH . F 5 HOH A 125 568 568 HOH HOH . F 5 HOH A 126 569 569 HOH HOH . F 5 HOH A 127 570 570 HOH HOH . F 5 HOH A 128 572 572 HOH HOH . F 5 HOH A 129 573 573 HOH HOH . F 5 HOH A 130 574 574 HOH HOH . F 5 HOH A 131 575 575 HOH HOH . F 5 HOH A 132 576 576 HOH HOH . F 5 HOH A 133 577 577 HOH HOH . F 5 HOH A 134 578 578 HOH HOH . F 5 HOH A 135 584 584 HOH HOH . F 5 HOH A 136 586 586 HOH HOH . F 5 HOH A 137 587 587 HOH HOH . F 5 HOH A 138 588 588 HOH HOH . F 5 HOH A 139 589 589 HOH HOH . F 5 HOH A 140 590 590 HOH HOH . F 5 HOH A 141 592 592 HOH HOH . F 5 HOH A 142 593 593 HOH HOH . F 5 HOH A 143 594 594 HOH HOH . F 5 HOH A 144 595 595 HOH HOH . F 5 HOH A 145 596 596 HOH HOH . F 5 HOH A 146 599 599 HOH HOH . F 5 HOH A 147 600 600 HOH HOH . F 5 HOH A 148 601 601 HOH HOH . F 5 HOH A 149 603 603 HOH HOH . F 5 HOH A 150 604 604 HOH HOH . F 5 HOH A 151 605 605 HOH HOH . F 5 HOH A 152 606 606 HOH HOH . F 5 HOH A 153 608 608 HOH HOH . F 5 HOH A 154 609 609 HOH HOH . F 5 HOH A 155 612 612 HOH HOH . F 5 HOH A 156 613 613 HOH HOH . F 5 HOH A 157 614 614 HOH HOH . F 5 HOH A 158 615 615 HOH HOH . F 5 HOH A 159 616 616 HOH HOH . F 5 HOH A 160 617 617 HOH HOH . F 5 HOH A 161 618 618 HOH HOH . F 5 HOH A 162 619 619 HOH HOH . F 5 HOH A 163 620 620 HOH HOH . F 5 HOH A 164 621 621 HOH HOH . F 5 HOH A 165 622 622 HOH HOH . F 5 HOH A 166 623 623 HOH HOH . F 5 HOH A 167 625 625 HOH HOH . F 5 HOH A 168 626 626 HOH HOH . F 5 HOH A 169 627 627 HOH HOH . F 5 HOH A 170 628 628 HOH HOH . F 5 HOH A 171 629 629 HOH HOH . F 5 HOH A 172 631 631 HOH HOH . F 5 HOH A 173 632 632 HOH HOH . F 5 HOH A 174 633 633 HOH HOH . F 5 HOH A 175 635 635 HOH HOH . F 5 HOH A 176 636 636 HOH HOH . F 5 HOH A 177 638 638 HOH HOH . F 5 HOH A 178 639 639 HOH HOH . F 5 HOH A 179 642 642 HOH HOH . F 5 HOH A 180 644 644 HOH HOH . F 5 HOH A 181 645 645 HOH HOH . F 5 HOH A 182 646 646 HOH HOH . F 5 HOH A 183 648 648 HOH HOH . F 5 HOH A 184 649 649 HOH HOH . F 5 HOH A 185 650 650 HOH HOH . F 5 HOH A 186 651 651 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . D 4 -21.355 -18.007 22.502 1 11.65 ? N2 PUT 350 A 1 HETATM 2 C C4 PUT . . . D 4 -21.987 -18.623 23.69 1 14.73 ? C4 PUT 350 A 1 HETATM 3 C C3 PUT . . . D 4 -22.304 -20.132 23.441 1 14.34 ? C3 PUT 350 A 1 HETATM 4 C C2 PUT . . . D 4 -23.018 -20.74 24.688 1 14.84 ? C2 PUT 350 A 1 HETATM 5 C C1 PUT . . . D 4 -23.345 -22.259 24.567 1 14.15 ? C1 PUT 350 A 1 HETATM 6 N N1 PUT . . . D 4 -24.204 -22.538 23.393 1 13.82 ? N1 PUT 350 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #