data_1I78 # _model_server_result.job_id N1i5vF-WbLOmdm_mPwae9Q _model_server_result.datetime_utc '2024-11-18 02:39:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":720}' # _entry.id 1I78 # _exptl.entry_id 1I78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1I78 _cell.length_a 98.389 _cell.length_b 98.389 _cell.length_c 165.695 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 B,G,H,J 4 1 A,C,D,E,F,I 4 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_665 x-y+1,-y+1,-z+1/3 1 0 0 0 -1 0 0 0 -1 49.1945 85.207373 55.231667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 272 n n C1 H11 MPD sing 273 n n C1 H12 MPD sing 274 n n C1 H13 MPD sing 275 n n C2 O2 MPD sing 276 n n C2 CM MPD sing 277 n n C2 C3 MPD sing 278 n n O2 HO2 MPD sing 279 n n CM HM1 MPD sing 280 n n CM HM2 MPD sing 281 n n CM HM3 MPD sing 282 n n C3 C4 MPD sing 283 n n C3 H31 MPD sing 284 n n C3 H32 MPD sing 285 n n C4 O4 MPD sing 286 n n C4 C5 MPD sing 287 n n C4 H4 MPD sing 288 n n O4 HO4 MPD sing 289 n n C5 H51 MPD sing 290 n n C5 H52 MPD sing 291 n n C5 H53 MPD sing 292 n n # _atom_sites.entry_id 1I78 _atom_sites.fract_transf_matrix[1][1] 0.010164 _atom_sites.fract_transf_matrix[1][2] 0.005868 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 700 700 BOG BOG . D 2 BOG A 1 900 900 BOG BOG . E 3 MPD A 1 710 710 MPD MPD . F 3 MPD A 1 720 720 MPD MPD . G 2 BOG B 1 600 600 BOG BOG . H 2 BOG B 1 800 800 BOG BOG . I 4 HOH A 1 901 2 HOH HOH . I 4 HOH A 2 902 3 HOH HOH . I 4 HOH A 3 903 5 HOH HOH . I 4 HOH A 4 904 7 HOH HOH . I 4 HOH A 5 905 8 HOH HOH . I 4 HOH A 6 906 10 HOH HOH . I 4 HOH A 7 907 11 HOH HOH . I 4 HOH A 8 908 12 HOH HOH . I 4 HOH A 9 909 16 HOH HOH . I 4 HOH A 10 910 20 HOH HOH . I 4 HOH A 11 911 22 HOH HOH . I 4 HOH A 12 912 24 HOH HOH . I 4 HOH A 13 913 28 HOH HOH . I 4 HOH A 14 914 29 HOH HOH . I 4 HOH A 15 915 31 HOH HOH . I 4 HOH A 16 916 32 HOH HOH . I 4 HOH A 17 917 33 HOH HOH . I 4 HOH A 18 918 34 HOH HOH . I 4 HOH A 19 919 35 HOH HOH . J 4 HOH B 1 801 1 HOH HOH . J 4 HOH B 2 802 4 HOH HOH . J 4 HOH B 3 803 17 HOH HOH . J 4 HOH B 4 804 18 HOH HOH . J 4 HOH B 5 805 19 HOH HOH . J 4 HOH B 6 806 21 HOH HOH . J 4 HOH B 7 807 25 HOH HOH . J 4 HOH B 8 808 26 HOH HOH . J 4 HOH B 9 809 27 HOH HOH . J 4 HOH B 10 810 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 3 39.892 27.21 32.694 1 92.19 ? C1 MPD 720 A 1 HETATM 2 C C2 MPD . . . F 3 39.359 27.524 31.298 1 92.17 ? C2 MPD 720 A 1 HETATM 3 O O2 MPD . . . F 3 38.524 26.297 31.033 1 92.54 ? O2 MPD 720 A 1 HETATM 4 C CM MPD . . . F 3 38.299 28.552 30.987 1 92 ? CM MPD 720 A 1 HETATM 5 C C3 MPD . . . F 3 40.534 27.635 30.245 1 91.47 ? C3 MPD 720 A 1 HETATM 6 C C4 MPD . . . F 3 41.665 26.695 30.37 1 90.77 ? C4 MPD 720 A 1 HETATM 7 O O4 MPD . . . F 3 41.056 25.41 30.212 1 90.3 ? O4 MPD 720 A 1 HETATM 8 C C5 MPD . . . F 3 42.727 26.966 29.271 1 90.12 ? C5 MPD 720 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 1271 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #