data_1I78 # _model_server_result.job_id xAI2c8qdbKm65rJ4xK5Mkg _model_server_result.datetime_utc '2024-11-18 02:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 1I78 # _exptl.entry_id 1I78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1I78 _cell.length_a 98.389 _cell.length_b 98.389 _cell.length_c 165.695 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 B,G,H,J 4 1 A,C,D,E,F,I 4 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_665 x-y+1,-y+1,-z+1/3 1 0 0 0 -1 0 0 0 -1 49.1945 85.207373 55.231667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1I78 _atom_sites.fract_transf_matrix[1][1] 0.010164 _atom_sites.fract_transf_matrix[1][2] 0.005868 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 700 700 BOG BOG . D 2 BOG A 1 900 900 BOG BOG . E 3 MPD A 1 710 710 MPD MPD . F 3 MPD A 1 720 720 MPD MPD . G 2 BOG B 1 600 600 BOG BOG . H 2 BOG B 1 800 800 BOG BOG . I 4 HOH A 1 901 2 HOH HOH . I 4 HOH A 2 902 3 HOH HOH . I 4 HOH A 3 903 5 HOH HOH . I 4 HOH A 4 904 7 HOH HOH . I 4 HOH A 5 905 8 HOH HOH . I 4 HOH A 6 906 10 HOH HOH . I 4 HOH A 7 907 11 HOH HOH . I 4 HOH A 8 908 12 HOH HOH . I 4 HOH A 9 909 16 HOH HOH . I 4 HOH A 10 910 20 HOH HOH . I 4 HOH A 11 911 22 HOH HOH . I 4 HOH A 12 912 24 HOH HOH . I 4 HOH A 13 913 28 HOH HOH . I 4 HOH A 14 914 29 HOH HOH . I 4 HOH A 15 915 31 HOH HOH . I 4 HOH A 16 916 32 HOH HOH . I 4 HOH A 17 917 33 HOH HOH . I 4 HOH A 18 918 34 HOH HOH . I 4 HOH A 19 919 35 HOH HOH . J 4 HOH B 1 801 1 HOH HOH . J 4 HOH B 2 802 4 HOH HOH . J 4 HOH B 3 803 17 HOH HOH . J 4 HOH B 4 804 18 HOH HOH . J 4 HOH B 5 805 19 HOH HOH . J 4 HOH B 6 806 21 HOH HOH . J 4 HOH B 7 807 25 HOH HOH . J 4 HOH B 8 808 26 HOH HOH . J 4 HOH B 9 809 27 HOH HOH . J 4 HOH B 10 810 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 2 21.774 58.189 -7.15 1 90.92 ? C1 BOG 900 A 1 HETATM 2 O O1 BOG . . . D 2 21.903 56.798 -6.815 1 89.57 ? O1 BOG 900 A 1 HETATM 3 C C2 BOG . . . D 2 23.146 58.891 -6.958 1 91.56 ? C2 BOG 900 A 1 HETATM 4 O O2 BOG . . . D 2 23.596 58.734 -5.625 1 91.66 ? O2 BOG 900 A 1 HETATM 5 C C3 BOG . . . D 2 23.02 60.382 -7.323 1 91.86 ? C3 BOG 900 A 1 HETATM 6 O O3 BOG . . . D 2 24.268 61.032 -7.159 1 90.71 ? O3 BOG 900 A 1 HETATM 7 C C4 BOG . . . D 2 22.548 60.499 -8.783 1 92.51 ? C4 BOG 900 A 1 HETATM 8 O O4 BOG . . . D 2 22.428 61.862 -9.161 1 93.41 ? O4 BOG 900 A 1 HETATM 9 C C5 BOG . . . D 2 21.179 59.767 -8.947 1 92.77 ? C5 BOG 900 A 1 HETATM 10 O O5 BOG . . . D 2 21.324 58.374 -8.537 1 92.46 ? O5 BOG 900 A 1 HETATM 11 C C6 BOG . . . D 2 20.686 59.838 -10.396 1 92.42 ? C6 BOG 900 A 1 HETATM 12 O O6 BOG . . . D 2 21.707 59.474 -11.31 1 91.06 ? O6 BOG 900 A 1 HETATM 13 C C1' BOG . . . D 2 20.746 55.987 -7.042 1 85.73 ? C1' BOG 900 A 1 HETATM 14 C C2' BOG . . . D 2 21.23 54.729 -7.744 1 83.07 ? C2' BOG 900 A 1 HETATM 15 C C3' BOG . . . D 2 21.739 53.693 -6.753 1 79.92 ? C3' BOG 900 A 1 HETATM 16 C C4' BOG . . . D 2 22.219 52.444 -7.471 1 78.46 ? C4' BOG 900 A 1 HETATM 17 C C5' BOG . . . D 2 22.721 51.389 -6.497 1 76.77 ? C5' BOG 900 A 1 HETATM 18 C C6' BOG . . . D 2 21.949 50.089 -6.678 1 76.14 ? C6' BOG 900 A 1 HETATM 19 C C7' BOG . . . D 2 22.422 49.01 -5.723 1 75.9 ? C7' BOG 900 A 1 HETATM 20 C C8' BOG . . . D 2 21.631 47.731 -5.921 1 75.69 ? C8' BOG 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #