data_1I79 # _model_server_result.job_id I34u19Y6CRzdLzV2x7Dpww _model_server_result.datetime_utc '2024-11-13 10:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":350}' # _entry.id 1I79 # _exptl.entry_id 1I79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.27 _cell.angle_gamma 90 _cell.entry_id 1I79 _cell.length_a 100.282 _cell.length_b 50.751 _cell.length_c 68.624 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.073364 0 66.201261 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B CA PYR 1 A PYR 68 1_555 C N MHZ . A MHZ 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 328 n n N2 HN21 PUT sing 329 n n N2 HN22 PUT sing 330 n n C4 C3 PUT sing 331 n n C4 H41 PUT sing 332 n n C4 H42 PUT sing 333 n n C3 C2 PUT sing 334 n n C3 H31 PUT sing 335 n n C3 H32 PUT sing 336 n n C2 C1 PUT sing 337 n n C2 H21 PUT sing 338 n n C2 H22 PUT sing 339 n n C1 N1 PUT sing 340 n n C1 H11 PUT sing 341 n n C1 H12 PUT sing 342 n n N1 HN11 PUT sing 343 n n N1 HN12 PUT sing 344 n n # _atom_sites.entry_id 1I79 _atom_sites.fract_transf_matrix[1][1] 0.009972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MHZ A 1 368 68 MHZ MHZ . D 4 PUT A 1 350 350 PUT PUT . E 5 HOH B 1 407 407 HOH HOH . E 5 HOH B 2 410 410 HOH HOH . E 5 HOH B 3 414 414 HOH HOH . E 5 HOH B 4 416 416 HOH HOH . E 5 HOH B 5 419 419 HOH HOH . E 5 HOH B 6 420 420 HOH HOH . E 5 HOH B 7 425 425 HOH HOH . E 5 HOH B 8 432 432 HOH HOH . E 5 HOH B 9 438 438 HOH HOH . E 5 HOH B 10 454 454 HOH HOH . E 5 HOH B 11 456 456 HOH HOH . E 5 HOH B 12 457 457 HOH HOH . E 5 HOH B 13 462 462 HOH HOH . E 5 HOH B 14 463 463 HOH HOH . E 5 HOH B 15 466 466 HOH HOH . E 5 HOH B 16 473 473 HOH HOH . E 5 HOH B 17 477 477 HOH HOH . E 5 HOH B 18 481 481 HOH HOH . E 5 HOH B 19 483 483 HOH HOH . E 5 HOH B 20 487 487 HOH HOH . E 5 HOH B 21 492 492 HOH HOH . E 5 HOH B 22 500 500 HOH HOH . E 5 HOH B 23 502 502 HOH HOH . E 5 HOH B 24 504 504 HOH HOH . E 5 HOH B 25 505 505 HOH HOH . E 5 HOH B 26 506 506 HOH HOH . E 5 HOH B 27 511 511 HOH HOH . E 5 HOH B 28 512 512 HOH HOH . E 5 HOH B 29 517 517 HOH HOH . E 5 HOH B 30 526 526 HOH HOH . E 5 HOH B 31 528 528 HOH HOH . E 5 HOH B 32 531 531 HOH HOH . E 5 HOH B 33 532 532 HOH HOH . E 5 HOH B 34 542 542 HOH HOH . E 5 HOH B 35 548 548 HOH HOH . E 5 HOH B 36 549 549 HOH HOH . E 5 HOH B 37 551 551 HOH HOH . E 5 HOH B 38 553 553 HOH HOH . E 5 HOH B 39 554 554 HOH HOH . E 5 HOH B 40 557 557 HOH HOH . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 408 408 HOH HOH . F 5 HOH A 8 409 409 HOH HOH . F 5 HOH A 9 411 411 HOH HOH . F 5 HOH A 10 412 412 HOH HOH . F 5 HOH A 11 413 413 HOH HOH . F 5 HOH A 12 415 415 HOH HOH . F 5 HOH A 13 417 417 HOH HOH . F 5 HOH A 14 418 418 HOH HOH . F 5 HOH A 15 421 421 HOH HOH . F 5 HOH A 16 422 422 HOH HOH . F 5 HOH A 17 423 423 HOH HOH . F 5 HOH A 18 424 424 HOH HOH . F 5 HOH A 19 426 426 HOH HOH . F 5 HOH A 20 427 427 HOH HOH . F 5 HOH A 21 428 428 HOH HOH . F 5 HOH A 22 429 429 HOH HOH . F 5 HOH A 23 430 430 HOH HOH . F 5 HOH A 24 431 431 HOH HOH . F 5 HOH A 25 433 433 HOH HOH . F 5 HOH A 26 434 434 HOH HOH . F 5 HOH A 27 435 435 HOH HOH . F 5 HOH A 28 436 436 HOH HOH . F 5 HOH A 29 437 437 HOH HOH . F 5 HOH A 30 439 439 HOH HOH . F 5 HOH A 31 440 440 HOH HOH . F 5 HOH A 32 441 441 HOH HOH . F 5 HOH A 33 442 442 HOH HOH . F 5 HOH A 34 443 443 HOH HOH . F 5 HOH A 35 444 444 HOH HOH . F 5 HOH A 36 445 445 HOH HOH . F 5 HOH A 37 446 446 HOH HOH . F 5 HOH A 38 447 447 HOH HOH . F 5 HOH A 39 448 448 HOH HOH . F 5 HOH A 40 449 449 HOH HOH . F 5 HOH A 41 450 450 HOH HOH . F 5 HOH A 42 451 451 HOH HOH . F 5 HOH A 43 452 452 HOH HOH . F 5 HOH A 44 453 453 HOH HOH . F 5 HOH A 45 455 455 HOH HOH . F 5 HOH A 46 458 458 HOH HOH . F 5 HOH A 47 459 459 HOH HOH . F 5 HOH A 48 460 460 HOH HOH . F 5 HOH A 49 461 461 HOH HOH . F 5 HOH A 50 464 464 HOH HOH . F 5 HOH A 51 465 465 HOH HOH . F 5 HOH A 52 467 467 HOH HOH . F 5 HOH A 53 468 468 HOH HOH . F 5 HOH A 54 469 469 HOH HOH . F 5 HOH A 55 470 470 HOH HOH . F 5 HOH A 56 471 471 HOH HOH . F 5 HOH A 57 472 472 HOH HOH . F 5 HOH A 58 474 474 HOH HOH . F 5 HOH A 59 475 475 HOH HOH . F 5 HOH A 60 476 476 HOH HOH . F 5 HOH A 61 478 478 HOH HOH . F 5 HOH A 62 479 479 HOH HOH . F 5 HOH A 63 480 480 HOH HOH . F 5 HOH A 64 482 482 HOH HOH . F 5 HOH A 65 484 484 HOH HOH . F 5 HOH A 66 485 485 HOH HOH . F 5 HOH A 67 486 486 HOH HOH . F 5 HOH A 68 488 488 HOH HOH . F 5 HOH A 69 489 489 HOH HOH . F 5 HOH A 70 490 490 HOH HOH . F 5 HOH A 71 491 491 HOH HOH . F 5 HOH A 72 493 493 HOH HOH . F 5 HOH A 73 494 494 HOH HOH . F 5 HOH A 74 495 495 HOH HOH . F 5 HOH A 75 496 496 HOH HOH . F 5 HOH A 76 497 497 HOH HOH . F 5 HOH A 77 498 498 HOH HOH . F 5 HOH A 78 499 499 HOH HOH . F 5 HOH A 79 501 501 HOH HOH . F 5 HOH A 80 503 503 HOH HOH . F 5 HOH A 81 507 507 HOH HOH . F 5 HOH A 82 508 508 HOH HOH . F 5 HOH A 83 509 509 HOH HOH . F 5 HOH A 84 510 510 HOH HOH . F 5 HOH A 85 513 513 HOH HOH . F 5 HOH A 86 514 514 HOH HOH . F 5 HOH A 87 515 515 HOH HOH . F 5 HOH A 88 516 516 HOH HOH . F 5 HOH A 89 518 518 HOH HOH . F 5 HOH A 90 519 519 HOH HOH . F 5 HOH A 91 520 520 HOH HOH . F 5 HOH A 92 521 521 HOH HOH . F 5 HOH A 93 522 522 HOH HOH . F 5 HOH A 94 523 523 HOH HOH . F 5 HOH A 95 524 524 HOH HOH . F 5 HOH A 96 525 525 HOH HOH . F 5 HOH A 97 527 527 HOH HOH . F 5 HOH A 98 529 529 HOH HOH . F 5 HOH A 99 530 530 HOH HOH . F 5 HOH A 100 533 533 HOH HOH . F 5 HOH A 101 534 534 HOH HOH . F 5 HOH A 102 535 535 HOH HOH . F 5 HOH A 103 536 536 HOH HOH . F 5 HOH A 104 537 537 HOH HOH . F 5 HOH A 105 538 538 HOH HOH . F 5 HOH A 106 539 539 HOH HOH . F 5 HOH A 107 540 540 HOH HOH . F 5 HOH A 108 541 541 HOH HOH . F 5 HOH A 109 543 543 HOH HOH . F 5 HOH A 110 544 544 HOH HOH . F 5 HOH A 111 545 545 HOH HOH . F 5 HOH A 112 546 546 HOH HOH . F 5 HOH A 113 547 547 HOH HOH . F 5 HOH A 114 550 550 HOH HOH . F 5 HOH A 115 552 552 HOH HOH . F 5 HOH A 116 555 555 HOH HOH . F 5 HOH A 117 556 556 HOH HOH . F 5 HOH A 118 558 558 HOH HOH . F 5 HOH A 119 559 559 HOH HOH . F 5 HOH A 120 560 560 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . D 4 -21.311 -18.111 22.541 1 13.91 ? N2 PUT 350 A 1 HETATM 2 C C4 PUT . . . D 4 -21.952 -18.725 23.727 1 14.33 ? C4 PUT 350 A 1 HETATM 3 C C3 PUT . . . D 4 -22.218 -20.235 23.484 1 16.29 ? C3 PUT 350 A 1 HETATM 4 C C2 PUT . . . D 4 -22.917 -20.881 24.72 1 19.24 ? C2 PUT 350 A 1 HETATM 5 C C1 PUT . . . D 4 -23.22 -22.398 24.537 1 14.47 ? C1 PUT 350 A 1 HETATM 6 N N1 PUT . . . D 4 -24.103 -22.621 23.359 1 14.25 ? N1 PUT 350 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #