data_1I79 # _model_server_result.job_id WCpA1hsAl6BlE-hStrEYXg _model_server_result.datetime_utc '2024-11-13 10:06:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":368}' # _entry.id 1I79 # _exptl.entry_id 1I79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.392 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-[(3-HYDRAZINOPROPYL)METHYLAMINO]ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.27 _cell.angle_gamma 90 _cell.entry_id 1I79 _cell.length_a 100.282 _cell.length_b 50.751 _cell.length_c 68.624 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.073364 0 66.201261 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B CA PYR 1 A PYR 68 1_555 C N MHZ . A MHZ 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C14 H24 N8 O3' _chem_comp.formula_weight 352.392 _chem_comp.id MHZ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-[(3-HYDRAZINOPROPYL)METHYLAMINO]ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N NA MHZ sing 237 n n N HN1 MHZ sing 238 n n N HN2 MHZ sing 239 n n NA CB MHZ sing 240 n n NA HNA1 MHZ sing 241 n n CB CC MHZ sing 242 n n CB HB1 MHZ sing 243 n n CB HB2 MHZ sing 244 n n CC CG MHZ sing 245 n n CC HCC1 MHZ sing 246 n n CC HCC2 MHZ sing 247 n n CG ND MHZ sing 248 n n CG HG1 MHZ sing 249 n n CG HG2 MHZ sing 250 n n ND CE MHZ sing 251 n n ND C5' MHZ sing 252 n n CE HE1 MHZ sing 253 n n CE HE2 MHZ sing 254 n n CE HE3 MHZ sing 255 n n C5' C4' MHZ sing 256 n n C5' "H5'1" MHZ sing 257 n n C5' "H5'2" MHZ sing 258 n n C4' O4' MHZ sing 259 n n C4' C3' MHZ sing 260 n n C4' H4' MHZ sing 261 n n O4' C1' MHZ sing 262 n n C1' N9 MHZ sing 263 n n C1' C2' MHZ sing 264 n n C1' H1' MHZ sing 265 n n N9 C4 MHZ sing 266 n y N9 C8 MHZ sing 267 n y C4 N3 MHZ doub 268 n y C4 C5 MHZ sing 269 n y N3 C2 MHZ sing 270 n y C2 N1 MHZ doub 271 n y C2 H2 MHZ sing 272 n n N1 C6 MHZ sing 273 n y C6 N6 MHZ sing 274 n n C6 C5 MHZ doub 275 n y N6 HN61 MHZ sing 276 n n N6 HN62 MHZ sing 277 n n C5 N7 MHZ sing 278 n y N7 C8 MHZ doub 279 n y C8 H8 MHZ sing 280 n n C2' O2' MHZ sing 281 n n C2' C3' MHZ sing 282 n n C2' H2' MHZ sing 283 n n O2' HO2' MHZ sing 284 n n C3' O3' MHZ sing 285 n n C3' H3' MHZ sing 286 n n O3' HO3' MHZ sing 287 n n # _atom_sites.entry_id 1I79 _atom_sites.fract_transf_matrix[1][1] 0.009972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MHZ A 1 368 68 MHZ MHZ . D 4 PUT A 1 350 350 PUT PUT . E 5 HOH B 1 407 407 HOH HOH . E 5 HOH B 2 410 410 HOH HOH . E 5 HOH B 3 414 414 HOH HOH . E 5 HOH B 4 416 416 HOH HOH . E 5 HOH B 5 419 419 HOH HOH . E 5 HOH B 6 420 420 HOH HOH . E 5 HOH B 7 425 425 HOH HOH . E 5 HOH B 8 432 432 HOH HOH . E 5 HOH B 9 438 438 HOH HOH . E 5 HOH B 10 454 454 HOH HOH . E 5 HOH B 11 456 456 HOH HOH . E 5 HOH B 12 457 457 HOH HOH . E 5 HOH B 13 462 462 HOH HOH . E 5 HOH B 14 463 463 HOH HOH . E 5 HOH B 15 466 466 HOH HOH . E 5 HOH B 16 473 473 HOH HOH . E 5 HOH B 17 477 477 HOH HOH . E 5 HOH B 18 481 481 HOH HOH . E 5 HOH B 19 483 483 HOH HOH . E 5 HOH B 20 487 487 HOH HOH . E 5 HOH B 21 492 492 HOH HOH . E 5 HOH B 22 500 500 HOH HOH . E 5 HOH B 23 502 502 HOH HOH . E 5 HOH B 24 504 504 HOH HOH . E 5 HOH B 25 505 505 HOH HOH . E 5 HOH B 26 506 506 HOH HOH . E 5 HOH B 27 511 511 HOH HOH . E 5 HOH B 28 512 512 HOH HOH . E 5 HOH B 29 517 517 HOH HOH . E 5 HOH B 30 526 526 HOH HOH . E 5 HOH B 31 528 528 HOH HOH . E 5 HOH B 32 531 531 HOH HOH . E 5 HOH B 33 532 532 HOH HOH . E 5 HOH B 34 542 542 HOH HOH . E 5 HOH B 35 548 548 HOH HOH . E 5 HOH B 36 549 549 HOH HOH . E 5 HOH B 37 551 551 HOH HOH . E 5 HOH B 38 553 553 HOH HOH . E 5 HOH B 39 554 554 HOH HOH . E 5 HOH B 40 557 557 HOH HOH . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 408 408 HOH HOH . F 5 HOH A 8 409 409 HOH HOH . F 5 HOH A 9 411 411 HOH HOH . F 5 HOH A 10 412 412 HOH HOH . F 5 HOH A 11 413 413 HOH HOH . F 5 HOH A 12 415 415 HOH HOH . F 5 HOH A 13 417 417 HOH HOH . F 5 HOH A 14 418 418 HOH HOH . F 5 HOH A 15 421 421 HOH HOH . F 5 HOH A 16 422 422 HOH HOH . F 5 HOH A 17 423 423 HOH HOH . F 5 HOH A 18 424 424 HOH HOH . F 5 HOH A 19 426 426 HOH HOH . F 5 HOH A 20 427 427 HOH HOH . F 5 HOH A 21 428 428 HOH HOH . F 5 HOH A 22 429 429 HOH HOH . F 5 HOH A 23 430 430 HOH HOH . F 5 HOH A 24 431 431 HOH HOH . F 5 HOH A 25 433 433 HOH HOH . F 5 HOH A 26 434 434 HOH HOH . F 5 HOH A 27 435 435 HOH HOH . F 5 HOH A 28 436 436 HOH HOH . F 5 HOH A 29 437 437 HOH HOH . F 5 HOH A 30 439 439 HOH HOH . F 5 HOH A 31 440 440 HOH HOH . F 5 HOH A 32 441 441 HOH HOH . F 5 HOH A 33 442 442 HOH HOH . F 5 HOH A 34 443 443 HOH HOH . F 5 HOH A 35 444 444 HOH HOH . F 5 HOH A 36 445 445 HOH HOH . F 5 HOH A 37 446 446 HOH HOH . F 5 HOH A 38 447 447 HOH HOH . F 5 HOH A 39 448 448 HOH HOH . F 5 HOH A 40 449 449 HOH HOH . F 5 HOH A 41 450 450 HOH HOH . F 5 HOH A 42 451 451 HOH HOH . F 5 HOH A 43 452 452 HOH HOH . F 5 HOH A 44 453 453 HOH HOH . F 5 HOH A 45 455 455 HOH HOH . F 5 HOH A 46 458 458 HOH HOH . F 5 HOH A 47 459 459 HOH HOH . F 5 HOH A 48 460 460 HOH HOH . F 5 HOH A 49 461 461 HOH HOH . F 5 HOH A 50 464 464 HOH HOH . F 5 HOH A 51 465 465 HOH HOH . F 5 HOH A 52 467 467 HOH HOH . F 5 HOH A 53 468 468 HOH HOH . F 5 HOH A 54 469 469 HOH HOH . F 5 HOH A 55 470 470 HOH HOH . F 5 HOH A 56 471 471 HOH HOH . F 5 HOH A 57 472 472 HOH HOH . F 5 HOH A 58 474 474 HOH HOH . F 5 HOH A 59 475 475 HOH HOH . F 5 HOH A 60 476 476 HOH HOH . F 5 HOH A 61 478 478 HOH HOH . F 5 HOH A 62 479 479 HOH HOH . F 5 HOH A 63 480 480 HOH HOH . F 5 HOH A 64 482 482 HOH HOH . F 5 HOH A 65 484 484 HOH HOH . F 5 HOH A 66 485 485 HOH HOH . F 5 HOH A 67 486 486 HOH HOH . F 5 HOH A 68 488 488 HOH HOH . F 5 HOH A 69 489 489 HOH HOH . F 5 HOH A 70 490 490 HOH HOH . F 5 HOH A 71 491 491 HOH HOH . F 5 HOH A 72 493 493 HOH HOH . F 5 HOH A 73 494 494 HOH HOH . F 5 HOH A 74 495 495 HOH HOH . F 5 HOH A 75 496 496 HOH HOH . F 5 HOH A 76 497 497 HOH HOH . F 5 HOH A 77 498 498 HOH HOH . F 5 HOH A 78 499 499 HOH HOH . F 5 HOH A 79 501 501 HOH HOH . F 5 HOH A 80 503 503 HOH HOH . F 5 HOH A 81 507 507 HOH HOH . F 5 HOH A 82 508 508 HOH HOH . F 5 HOH A 83 509 509 HOH HOH . F 5 HOH A 84 510 510 HOH HOH . F 5 HOH A 85 513 513 HOH HOH . F 5 HOH A 86 514 514 HOH HOH . F 5 HOH A 87 515 515 HOH HOH . F 5 HOH A 88 516 516 HOH HOH . F 5 HOH A 89 518 518 HOH HOH . F 5 HOH A 90 519 519 HOH HOH . F 5 HOH A 91 520 520 HOH HOH . F 5 HOH A 92 521 521 HOH HOH . F 5 HOH A 93 522 522 HOH HOH . F 5 HOH A 94 523 523 HOH HOH . F 5 HOH A 95 524 524 HOH HOH . F 5 HOH A 96 525 525 HOH HOH . F 5 HOH A 97 527 527 HOH HOH . F 5 HOH A 98 529 529 HOH HOH . F 5 HOH A 99 530 530 HOH HOH . F 5 HOH A 100 533 533 HOH HOH . F 5 HOH A 101 534 534 HOH HOH . F 5 HOH A 102 535 535 HOH HOH . F 5 HOH A 103 536 536 HOH HOH . F 5 HOH A 104 537 537 HOH HOH . F 5 HOH A 105 538 538 HOH HOH . F 5 HOH A 106 539 539 HOH HOH . F 5 HOH A 107 540 540 HOH HOH . F 5 HOH A 108 541 541 HOH HOH . F 5 HOH A 109 543 543 HOH HOH . F 5 HOH A 110 544 544 HOH HOH . F 5 HOH A 111 545 545 HOH HOH . F 5 HOH A 112 546 546 HOH HOH . F 5 HOH A 113 547 547 HOH HOH . F 5 HOH A 114 550 550 HOH HOH . F 5 HOH A 115 552 552 HOH HOH . F 5 HOH A 116 555 555 HOH HOH . F 5 HOH A 117 556 556 HOH HOH . F 5 HOH A 118 558 558 HOH HOH . F 5 HOH A 119 559 559 HOH HOH . F 5 HOH A 120 560 560 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MHZ . . . C 3 -21.705 -9.87 9.75 1 23.45 ? N MHZ 368 A 1 HETATM 2 N NA MHZ . . . C 3 -22.184 -9.829 8.426 1 27.36 ? NA MHZ 368 A 1 HETATM 3 C CB MHZ . . . C 3 -21.054 -9.354 7.475 1 31.37 ? CB MHZ 368 A 1 HETATM 4 C CC MHZ . . . C 3 -20.102 -8.341 8.199 1 33.95 ? CC MHZ 368 A 1 HETATM 5 C CG MHZ . . . C 3 -18.615 -8.962 8.304 1 32.21 ? CG MHZ 368 A 1 HETATM 6 N ND MHZ . . . C 3 -17.79 -8.777 6.79 1 33.5 ? ND MHZ 368 A 1 HETATM 7 C CE MHZ . . . C 3 -17.598 -10.145 6.227 1 30.6 ? CE MHZ 368 A 1 HETATM 8 C C5' MHZ . . . C 3 -16.365 -8.139 7.065 1 31.09 ? C5' MHZ 368 A 1 HETATM 9 C C4' MHZ . . . C 3 -15.64 -7.873 5.761 1 31.91 ? C4' MHZ 368 A 1 HETATM 10 O O4' MHZ . . . C 3 -16.585 -7.383 4.767 1 33.02 ? O4' MHZ 368 A 1 HETATM 11 C C1' MHZ . . . C 3 -16.166 -6.115 4.293 1 35.6 ? C1' MHZ 368 A 1 HETATM 12 N N9 MHZ . . . C 3 -17.354 -5.296 4.054 1 38.7 ? N9 MHZ 368 A 1 HETATM 13 C C4 MHZ . . . C 3 -18.427 -5.156 4.901 1 40.86 ? C4 MHZ 368 A 1 HETATM 14 N N3 MHZ . . . C 3 -18.594 -5.732 6.104 1 42.02 ? N3 MHZ 368 A 1 HETATM 15 C C2 MHZ . . . C 3 -19.755 -5.365 6.642 1 44.09 ? C2 MHZ 368 A 1 HETATM 16 N N1 MHZ . . . C 3 -20.694 -4.548 6.152 1 43.06 ? N1 MHZ 368 A 1 HETATM 17 C C6 MHZ . . . C 3 -20.494 -3.982 4.941 1 43.3 ? C6 MHZ 368 A 1 HETATM 18 N N6 MHZ . . . C 3 -21.432 -3.161 4.456 1 45.29 ? N6 MHZ 368 A 1 HETATM 19 C C5 MHZ . . . C 3 -19.302 -4.294 4.264 1 41.52 ? C5 MHZ 368 A 1 HETATM 20 N N7 MHZ . . . C 3 -18.793 -3.898 3.034 1 40.18 ? N7 MHZ 368 A 1 HETATM 21 C C8 MHZ . . . C 3 -17.639 -4.518 2.957 1 40.78 ? C8 MHZ 368 A 1 HETATM 22 C C2' MHZ . . . C 3 -15.251 -5.557 5.381 1 32.65 ? C2' MHZ 368 A 1 HETATM 23 O O2' MHZ . . . C 3 -14.374 -4.583 4.854 1 31.66 ? O2' MHZ 368 A 1 HETATM 24 C C3' MHZ . . . C 3 -14.535 -6.822 5.834 1 33.46 ? C3' MHZ 368 A 1 HETATM 25 O O3' MHZ . . . C 3 -13.493 -7.146 4.919 1 31.64 ? O3' MHZ 368 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #