data_1I7B # _model_server_result.job_id -h-B1j_44lv2zja2HVQYiQ _model_server_result.datetime_utc '2024-11-28 03:17:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":350}' # _entry.id 1I7B # _exptl.entry_id 1I7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.37 _cell.angle_gamma 90 _cell.entry_id 1I7B _cell.length_a 99.964 _cell.length_b 51.242 _cell.length_c 68.509 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.158398 0 66.058729 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B CA PYR 1 A PYR 68 1_555 C N SMM . A SMM 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 277 n n N2 HN21 PUT sing 278 n n N2 HN22 PUT sing 279 n n C4 C3 PUT sing 280 n n C4 H41 PUT sing 281 n n C4 H42 PUT sing 282 n n C3 C2 PUT sing 283 n n C3 H31 PUT sing 284 n n C3 H32 PUT sing 285 n n C2 C1 PUT sing 286 n n C2 H21 PUT sing 287 n n C2 H22 PUT sing 288 n n C1 N1 PUT sing 289 n n C1 H11 PUT sing 290 n n C1 H12 PUT sing 291 n n N1 HN11 PUT sing 292 n n N1 HN12 PUT sing 293 n n # _atom_sites.entry_id 1I7B _atom_sites.fract_transf_matrix[1][1] 0.010004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00275 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SMM A 1 368 68 SMM SMM . D 4 PUT A 1 350 350 PUT PUT . E 5 HOH B 1 407 407 HOH HOH . E 5 HOH B 2 409 409 HOH HOH . E 5 HOH B 3 410 410 HOH HOH . E 5 HOH B 4 411 411 HOH HOH . E 5 HOH B 5 413 413 HOH HOH . E 5 HOH B 6 414 414 HOH HOH . E 5 HOH B 7 425 425 HOH HOH . E 5 HOH B 8 426 426 HOH HOH . E 5 HOH B 9 431 431 HOH HOH . E 5 HOH B 10 437 437 HOH HOH . E 5 HOH B 11 439 439 HOH HOH . E 5 HOH B 12 442 442 HOH HOH . E 5 HOH B 13 443 443 HOH HOH . E 5 HOH B 14 445 445 HOH HOH . E 5 HOH B 15 450 450 HOH HOH . E 5 HOH B 16 453 453 HOH HOH . E 5 HOH B 17 454 454 HOH HOH . E 5 HOH B 18 463 463 HOH HOH . E 5 HOH B 19 464 464 HOH HOH . E 5 HOH B 20 465 465 HOH HOH . E 5 HOH B 21 467 467 HOH HOH . E 5 HOH B 22 472 472 HOH HOH . E 5 HOH B 23 489 489 HOH HOH . E 5 HOH B 24 494 494 HOH HOH . E 5 HOH B 25 497 497 HOH HOH . E 5 HOH B 26 502 502 HOH HOH . E 5 HOH B 27 503 503 HOH HOH . E 5 HOH B 28 510 510 HOH HOH . E 5 HOH B 29 515 515 HOH HOH . E 5 HOH B 30 520 520 HOH HOH . E 5 HOH B 31 523 523 HOH HOH . E 5 HOH B 32 525 525 HOH HOH . E 5 HOH B 33 527 527 HOH HOH . E 5 HOH B 34 534 534 HOH HOH . E 5 HOH B 35 536 536 HOH HOH . E 5 HOH B 36 538 538 HOH HOH . E 5 HOH B 37 539 539 HOH HOH . E 5 HOH B 38 542 542 HOH HOH . E 5 HOH B 39 544 544 HOH HOH . E 5 HOH B 40 546 546 HOH HOH . E 5 HOH B 41 549 549 HOH HOH . E 5 HOH B 42 554 554 HOH HOH . E 5 HOH B 43 555 555 HOH HOH . E 5 HOH B 44 557 557 HOH HOH . E 5 HOH B 45 569 569 HOH HOH . E 5 HOH B 46 572 572 HOH HOH . E 5 HOH B 47 573 573 HOH HOH . E 5 HOH B 48 577 577 HOH HOH . E 5 HOH B 49 578 578 HOH HOH . E 5 HOH B 50 584 584 HOH HOH . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 408 408 HOH HOH . F 5 HOH A 8 412 412 HOH HOH . F 5 HOH A 9 415 415 HOH HOH . F 5 HOH A 10 416 416 HOH HOH . F 5 HOH A 11 417 417 HOH HOH . F 5 HOH A 12 418 418 HOH HOH . F 5 HOH A 13 419 419 HOH HOH . F 5 HOH A 14 420 420 HOH HOH . F 5 HOH A 15 421 421 HOH HOH . F 5 HOH A 16 422 422 HOH HOH . F 5 HOH A 17 423 423 HOH HOH . F 5 HOH A 18 424 424 HOH HOH . F 5 HOH A 19 427 427 HOH HOH . F 5 HOH A 20 428 428 HOH HOH . F 5 HOH A 21 429 429 HOH HOH . F 5 HOH A 22 430 430 HOH HOH . F 5 HOH A 23 432 432 HOH HOH . F 5 HOH A 24 433 433 HOH HOH . F 5 HOH A 25 434 434 HOH HOH . F 5 HOH A 26 435 435 HOH HOH . F 5 HOH A 27 436 436 HOH HOH . F 5 HOH A 28 438 438 HOH HOH . F 5 HOH A 29 440 440 HOH HOH . F 5 HOH A 30 441 441 HOH HOH . F 5 HOH A 31 444 444 HOH HOH . F 5 HOH A 32 446 446 HOH HOH . F 5 HOH A 33 447 447 HOH HOH . F 5 HOH A 34 448 448 HOH HOH . F 5 HOH A 35 449 449 HOH HOH . F 5 HOH A 36 451 451 HOH HOH . F 5 HOH A 37 452 452 HOH HOH . F 5 HOH A 38 455 455 HOH HOH . F 5 HOH A 39 456 456 HOH HOH . F 5 HOH A 40 457 457 HOH HOH . F 5 HOH A 41 458 458 HOH HOH . F 5 HOH A 42 459 459 HOH HOH . F 5 HOH A 43 460 460 HOH HOH . F 5 HOH A 44 461 461 HOH HOH . F 5 HOH A 45 462 462 HOH HOH . F 5 HOH A 46 466 466 HOH HOH . F 5 HOH A 47 468 468 HOH HOH . F 5 HOH A 48 469 469 HOH HOH . F 5 HOH A 49 470 470 HOH HOH . F 5 HOH A 50 471 471 HOH HOH . F 5 HOH A 51 473 473 HOH HOH . F 5 HOH A 52 474 474 HOH HOH . F 5 HOH A 53 475 475 HOH HOH . F 5 HOH A 54 476 476 HOH HOH . F 5 HOH A 55 477 477 HOH HOH . F 5 HOH A 56 478 478 HOH HOH . F 5 HOH A 57 479 479 HOH HOH . F 5 HOH A 58 480 480 HOH HOH . F 5 HOH A 59 481 481 HOH HOH . F 5 HOH A 60 482 482 HOH HOH . F 5 HOH A 61 483 483 HOH HOH . F 5 HOH A 62 484 484 HOH HOH . F 5 HOH A 63 485 485 HOH HOH . F 5 HOH A 64 486 486 HOH HOH . F 5 HOH A 65 487 487 HOH HOH . F 5 HOH A 66 488 488 HOH HOH . F 5 HOH A 67 490 490 HOH HOH . F 5 HOH A 68 491 491 HOH HOH . F 5 HOH A 69 492 492 HOH HOH . F 5 HOH A 70 493 493 HOH HOH . F 5 HOH A 71 495 495 HOH HOH . F 5 HOH A 72 496 496 HOH HOH . F 5 HOH A 73 498 498 HOH HOH . F 5 HOH A 74 499 499 HOH HOH . F 5 HOH A 75 500 500 HOH HOH . F 5 HOH A 76 501 501 HOH HOH . F 5 HOH A 77 504 504 HOH HOH . F 5 HOH A 78 505 505 HOH HOH . F 5 HOH A 79 506 506 HOH HOH . F 5 HOH A 80 507 507 HOH HOH . F 5 HOH A 81 508 508 HOH HOH . F 5 HOH A 82 509 509 HOH HOH . F 5 HOH A 83 511 511 HOH HOH . F 5 HOH A 84 512 512 HOH HOH . F 5 HOH A 85 513 513 HOH HOH . F 5 HOH A 86 514 514 HOH HOH . F 5 HOH A 87 516 516 HOH HOH . F 5 HOH A 88 517 517 HOH HOH . F 5 HOH A 89 518 518 HOH HOH . F 5 HOH A 90 519 519 HOH HOH . F 5 HOH A 91 521 521 HOH HOH . F 5 HOH A 92 522 522 HOH HOH . F 5 HOH A 93 524 524 HOH HOH . F 5 HOH A 94 526 526 HOH HOH . F 5 HOH A 95 528 528 HOH HOH . F 5 HOH A 96 529 529 HOH HOH . F 5 HOH A 97 530 530 HOH HOH . F 5 HOH A 98 531 531 HOH HOH . F 5 HOH A 99 532 532 HOH HOH . F 5 HOH A 100 533 533 HOH HOH . F 5 HOH A 101 535 535 HOH HOH . F 5 HOH A 102 537 537 HOH HOH . F 5 HOH A 103 540 540 HOH HOH . F 5 HOH A 104 541 541 HOH HOH . F 5 HOH A 105 543 543 HOH HOH . F 5 HOH A 106 545 545 HOH HOH . F 5 HOH A 107 547 547 HOH HOH . F 5 HOH A 108 548 548 HOH HOH . F 5 HOH A 109 550 550 HOH HOH . F 5 HOH A 110 551 551 HOH HOH . F 5 HOH A 111 552 552 HOH HOH . F 5 HOH A 112 553 553 HOH HOH . F 5 HOH A 113 556 556 HOH HOH . F 5 HOH A 114 558 558 HOH HOH . F 5 HOH A 115 559 559 HOH HOH . F 5 HOH A 116 560 560 HOH HOH . F 5 HOH A 117 561 561 HOH HOH . F 5 HOH A 118 562 562 HOH HOH . F 5 HOH A 119 563 563 HOH HOH . F 5 HOH A 120 564 564 HOH HOH . F 5 HOH A 121 565 565 HOH HOH . F 5 HOH A 122 566 566 HOH HOH . F 5 HOH A 123 567 567 HOH HOH . F 5 HOH A 124 568 568 HOH HOH . F 5 HOH A 125 570 570 HOH HOH . F 5 HOH A 126 571 571 HOH HOH . F 5 HOH A 127 574 574 HOH HOH . F 5 HOH A 128 575 575 HOH HOH . F 5 HOH A 129 576 576 HOH HOH . F 5 HOH A 130 579 579 HOH HOH . F 5 HOH A 131 580 580 HOH HOH . F 5 HOH A 132 581 581 HOH HOH . F 5 HOH A 133 582 582 HOH HOH . F 5 HOH A 134 583 583 HOH HOH . F 5 HOH A 135 585 585 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . D 4 -21.569 -17.917 22.342 1 13.13 ? N2 PUT 350 A 1 HETATM 2 C C4 PUT . . . D 4 -21.991 -18.552 23.599 1 15.12 ? C4 PUT 350 A 1 HETATM 3 C C3 PUT . . . D 4 -22.325 -20.046 23.346 1 17.83 ? C3 PUT 350 A 1 HETATM 4 C C2 PUT . . . D 4 -22.794 -20.728 24.664 1 20.48 ? C2 PUT 350 A 1 HETATM 5 C C1 PUT . . . D 4 -23.153 -22.224 24.463 1 19.87 ? C1 PUT 350 A 1 HETATM 6 N N1 PUT . . . D 4 -24.239 -22.372 23.458 1 19.72 ? N1 PUT 350 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #