data_1I7B # _model_server_result.job_id XO2m66Smsrlo0qq6UcAs6w _model_server_result.datetime_utc '2024-11-24 09:52:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":368}' # _entry.id 1I7B # _exptl.entry_id 1I7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.48 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-ADENOSYLMETHIONINE METHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.37 _cell.angle_gamma 90 _cell.entry_id 1I7B _cell.length_a 99.964 _cell.length_b 51.242 _cell.length_c 68.509 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.158398 0 66.058729 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B CA PYR 1 A PYR 68 1_555 C N SMM . A SMM 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C16 H26 N6 O5 S' _chem_comp.formula_weight 414.48 _chem_comp.id SMM _chem_comp.mon_nstd_flag . _chem_comp.name 'S-ADENOSYLMETHIONINE METHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SMM sing 316 n n N HN1 SMM sing 317 n n N HN2 SMM sing 318 n n CA CB SMM sing 319 n n CA C SMM sing 320 n n CA HA1 SMM sing 321 n n CB CG SMM sing 322 n n CB HB1 SMM sing 323 n n CB HB2 SMM sing 324 n n CG SD SMM sing 325 n n CG HG1 SMM sing 326 n n CG HG2 SMM sing 327 n n SD CE SMM sing 328 n n SD C5' SMM sing 329 n n SD HD1 SMM sing 330 n n CE HE1 SMM sing 331 n n CE HE2 SMM sing 332 n n CE HE3 SMM sing 333 n n C5' C4' SMM sing 334 n n C5' "H5'1" SMM sing 335 n n C5' "H5'2" SMM sing 336 n n C4' O4' SMM sing 337 n n C4' C3' SMM sing 338 n n C4' H4' SMM sing 339 n n O4' C1' SMM sing 340 n n C1' N9 SMM sing 341 n n C1' C2' SMM sing 342 n n C1' H1' SMM sing 343 n n N9 C4 SMM sing 344 n y N9 C8 SMM sing 345 n y C4 N3 SMM doub 346 n y C4 C5 SMM sing 347 n y N3 C2 SMM sing 348 n y C2 N1 SMM doub 349 n y C2 H2 SMM sing 350 n n N1 C6 SMM sing 351 n y C6 N6 SMM sing 352 n n C6 C5 SMM doub 353 n y N6 HN61 SMM sing 354 n n N6 HN62 SMM sing 355 n n C5 N7 SMM sing 356 n y N7 C8 SMM doub 357 n y C8 H8 SMM sing 358 n n C2' O2' SMM sing 359 n n C2' C3' SMM sing 360 n n C2' H2' SMM sing 361 n n O2' HO2' SMM sing 362 n n C3' O3' SMM sing 363 n n C3' H3' SMM sing 364 n n O3' HO3' SMM sing 365 n n C O SMM doub 366 n n C OXT SMM sing 367 n n OXT CXT SMM sing 368 n n CXT HXT1 SMM sing 369 n n CXT HXT2 SMM sing 370 n n CXT HXT3 SMM sing 371 n n # _atom_sites.entry_id 1I7B _atom_sites.fract_transf_matrix[1][1] 0.010004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00275 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SMM A 1 368 68 SMM SMM . D 4 PUT A 1 350 350 PUT PUT . E 5 HOH B 1 407 407 HOH HOH . E 5 HOH B 2 409 409 HOH HOH . E 5 HOH B 3 410 410 HOH HOH . E 5 HOH B 4 411 411 HOH HOH . E 5 HOH B 5 413 413 HOH HOH . E 5 HOH B 6 414 414 HOH HOH . E 5 HOH B 7 425 425 HOH HOH . E 5 HOH B 8 426 426 HOH HOH . E 5 HOH B 9 431 431 HOH HOH . E 5 HOH B 10 437 437 HOH HOH . E 5 HOH B 11 439 439 HOH HOH . E 5 HOH B 12 442 442 HOH HOH . E 5 HOH B 13 443 443 HOH HOH . E 5 HOH B 14 445 445 HOH HOH . E 5 HOH B 15 450 450 HOH HOH . E 5 HOH B 16 453 453 HOH HOH . E 5 HOH B 17 454 454 HOH HOH . E 5 HOH B 18 463 463 HOH HOH . E 5 HOH B 19 464 464 HOH HOH . E 5 HOH B 20 465 465 HOH HOH . E 5 HOH B 21 467 467 HOH HOH . E 5 HOH B 22 472 472 HOH HOH . E 5 HOH B 23 489 489 HOH HOH . E 5 HOH B 24 494 494 HOH HOH . E 5 HOH B 25 497 497 HOH HOH . E 5 HOH B 26 502 502 HOH HOH . E 5 HOH B 27 503 503 HOH HOH . E 5 HOH B 28 510 510 HOH HOH . E 5 HOH B 29 515 515 HOH HOH . E 5 HOH B 30 520 520 HOH HOH . E 5 HOH B 31 523 523 HOH HOH . E 5 HOH B 32 525 525 HOH HOH . E 5 HOH B 33 527 527 HOH HOH . E 5 HOH B 34 534 534 HOH HOH . E 5 HOH B 35 536 536 HOH HOH . E 5 HOH B 36 538 538 HOH HOH . E 5 HOH B 37 539 539 HOH HOH . E 5 HOH B 38 542 542 HOH HOH . E 5 HOH B 39 544 544 HOH HOH . E 5 HOH B 40 546 546 HOH HOH . E 5 HOH B 41 549 549 HOH HOH . E 5 HOH B 42 554 554 HOH HOH . E 5 HOH B 43 555 555 HOH HOH . E 5 HOH B 44 557 557 HOH HOH . E 5 HOH B 45 569 569 HOH HOH . E 5 HOH B 46 572 572 HOH HOH . E 5 HOH B 47 573 573 HOH HOH . E 5 HOH B 48 577 577 HOH HOH . E 5 HOH B 49 578 578 HOH HOH . E 5 HOH B 50 584 584 HOH HOH . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 408 408 HOH HOH . F 5 HOH A 8 412 412 HOH HOH . F 5 HOH A 9 415 415 HOH HOH . F 5 HOH A 10 416 416 HOH HOH . F 5 HOH A 11 417 417 HOH HOH . F 5 HOH A 12 418 418 HOH HOH . F 5 HOH A 13 419 419 HOH HOH . F 5 HOH A 14 420 420 HOH HOH . F 5 HOH A 15 421 421 HOH HOH . F 5 HOH A 16 422 422 HOH HOH . F 5 HOH A 17 423 423 HOH HOH . F 5 HOH A 18 424 424 HOH HOH . F 5 HOH A 19 427 427 HOH HOH . F 5 HOH A 20 428 428 HOH HOH . F 5 HOH A 21 429 429 HOH HOH . F 5 HOH A 22 430 430 HOH HOH . F 5 HOH A 23 432 432 HOH HOH . F 5 HOH A 24 433 433 HOH HOH . F 5 HOH A 25 434 434 HOH HOH . F 5 HOH A 26 435 435 HOH HOH . F 5 HOH A 27 436 436 HOH HOH . F 5 HOH A 28 438 438 HOH HOH . F 5 HOH A 29 440 440 HOH HOH . F 5 HOH A 30 441 441 HOH HOH . F 5 HOH A 31 444 444 HOH HOH . F 5 HOH A 32 446 446 HOH HOH . F 5 HOH A 33 447 447 HOH HOH . F 5 HOH A 34 448 448 HOH HOH . F 5 HOH A 35 449 449 HOH HOH . F 5 HOH A 36 451 451 HOH HOH . F 5 HOH A 37 452 452 HOH HOH . F 5 HOH A 38 455 455 HOH HOH . F 5 HOH A 39 456 456 HOH HOH . F 5 HOH A 40 457 457 HOH HOH . F 5 HOH A 41 458 458 HOH HOH . F 5 HOH A 42 459 459 HOH HOH . F 5 HOH A 43 460 460 HOH HOH . F 5 HOH A 44 461 461 HOH HOH . F 5 HOH A 45 462 462 HOH HOH . F 5 HOH A 46 466 466 HOH HOH . F 5 HOH A 47 468 468 HOH HOH . F 5 HOH A 48 469 469 HOH HOH . F 5 HOH A 49 470 470 HOH HOH . F 5 HOH A 50 471 471 HOH HOH . F 5 HOH A 51 473 473 HOH HOH . F 5 HOH A 52 474 474 HOH HOH . F 5 HOH A 53 475 475 HOH HOH . F 5 HOH A 54 476 476 HOH HOH . F 5 HOH A 55 477 477 HOH HOH . F 5 HOH A 56 478 478 HOH HOH . F 5 HOH A 57 479 479 HOH HOH . F 5 HOH A 58 480 480 HOH HOH . F 5 HOH A 59 481 481 HOH HOH . F 5 HOH A 60 482 482 HOH HOH . F 5 HOH A 61 483 483 HOH HOH . F 5 HOH A 62 484 484 HOH HOH . F 5 HOH A 63 485 485 HOH HOH . F 5 HOH A 64 486 486 HOH HOH . F 5 HOH A 65 487 487 HOH HOH . F 5 HOH A 66 488 488 HOH HOH . F 5 HOH A 67 490 490 HOH HOH . F 5 HOH A 68 491 491 HOH HOH . F 5 HOH A 69 492 492 HOH HOH . F 5 HOH A 70 493 493 HOH HOH . F 5 HOH A 71 495 495 HOH HOH . F 5 HOH A 72 496 496 HOH HOH . F 5 HOH A 73 498 498 HOH HOH . F 5 HOH A 74 499 499 HOH HOH . F 5 HOH A 75 500 500 HOH HOH . F 5 HOH A 76 501 501 HOH HOH . F 5 HOH A 77 504 504 HOH HOH . F 5 HOH A 78 505 505 HOH HOH . F 5 HOH A 79 506 506 HOH HOH . F 5 HOH A 80 507 507 HOH HOH . F 5 HOH A 81 508 508 HOH HOH . F 5 HOH A 82 509 509 HOH HOH . F 5 HOH A 83 511 511 HOH HOH . F 5 HOH A 84 512 512 HOH HOH . F 5 HOH A 85 513 513 HOH HOH . F 5 HOH A 86 514 514 HOH HOH . F 5 HOH A 87 516 516 HOH HOH . F 5 HOH A 88 517 517 HOH HOH . F 5 HOH A 89 518 518 HOH HOH . F 5 HOH A 90 519 519 HOH HOH . F 5 HOH A 91 521 521 HOH HOH . F 5 HOH A 92 522 522 HOH HOH . F 5 HOH A 93 524 524 HOH HOH . F 5 HOH A 94 526 526 HOH HOH . F 5 HOH A 95 528 528 HOH HOH . F 5 HOH A 96 529 529 HOH HOH . F 5 HOH A 97 530 530 HOH HOH . F 5 HOH A 98 531 531 HOH HOH . F 5 HOH A 99 532 532 HOH HOH . F 5 HOH A 100 533 533 HOH HOH . F 5 HOH A 101 535 535 HOH HOH . F 5 HOH A 102 537 537 HOH HOH . F 5 HOH A 103 540 540 HOH HOH . F 5 HOH A 104 541 541 HOH HOH . F 5 HOH A 105 543 543 HOH HOH . F 5 HOH A 106 545 545 HOH HOH . F 5 HOH A 107 547 547 HOH HOH . F 5 HOH A 108 548 548 HOH HOH . F 5 HOH A 109 550 550 HOH HOH . F 5 HOH A 110 551 551 HOH HOH . F 5 HOH A 111 552 552 HOH HOH . F 5 HOH A 112 553 553 HOH HOH . F 5 HOH A 113 556 556 HOH HOH . F 5 HOH A 114 558 558 HOH HOH . F 5 HOH A 115 559 559 HOH HOH . F 5 HOH A 116 560 560 HOH HOH . F 5 HOH A 117 561 561 HOH HOH . F 5 HOH A 118 562 562 HOH HOH . F 5 HOH A 119 563 563 HOH HOH . F 5 HOH A 120 564 564 HOH HOH . F 5 HOH A 121 565 565 HOH HOH . F 5 HOH A 122 566 566 HOH HOH . F 5 HOH A 123 567 567 HOH HOH . F 5 HOH A 124 568 568 HOH HOH . F 5 HOH A 125 570 570 HOH HOH . F 5 HOH A 126 571 571 HOH HOH . F 5 HOH A 127 574 574 HOH HOH . F 5 HOH A 128 575 575 HOH HOH . F 5 HOH A 129 576 576 HOH HOH . F 5 HOH A 130 579 579 HOH HOH . F 5 HOH A 131 580 580 HOH HOH . F 5 HOH A 132 581 581 HOH HOH . F 5 HOH A 133 582 582 HOH HOH . F 5 HOH A 134 583 583 HOH HOH . F 5 HOH A 135 585 585 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SMM . . . C 3 -21.977 -9.558 9.544 1 20.16 ? N SMM 368 A 1 HETATM 2 C CA SMM . . . C 3 -20.895 -8.636 9.533 1 25 ? CA SMM 368 A 1 HETATM 3 C CB SMM . . . C 3 -20.283 -8.665 8.164 1 25.76 ? CB SMM 368 A 1 HETATM 4 C CG SMM . . . C 3 -18.648 -8.685 8.274 1 28.81 ? CG SMM 368 A 1 HETATM 5 S SD SMM . . . C 3 -17.957 -8.389 6.783 1 32.85 ? SD SMM 368 A 1 HETATM 6 C CE SMM . . . C 3 -17.803 -9.685 6.052 1 29.3 ? CE SMM 368 A 1 HETATM 7 C C5' SMM . . . C 3 -16.449 -7.671 7.017 1 29.92 ? C5' SMM 368 A 1 HETATM 8 C C4' SMM . . . C 3 -15.668 -7.537 5.726 1 27.89 ? C4' SMM 368 A 1 HETATM 9 O O4' SMM . . . C 3 -16.526 -6.984 4.688 1 29 ? O4' SMM 368 A 1 HETATM 10 C C1' SMM . . . C 3 -16.011 -5.736 4.255 1 28.2 ? C1' SMM 368 A 1 HETATM 11 N N9 SMM . . . C 3 -17.138 -4.84 4.011 1 28.42 ? N9 SMM 368 A 1 HETATM 12 C C4 SMM . . . C 3 -18.157 -4.573 4.892 1 27.86 ? C4 SMM 368 A 1 HETATM 13 N N3 SMM . . . C 3 -18.317 -5.077 6.128 1 26.6 ? N3 SMM 368 A 1 HETATM 14 C C2 SMM . . . C 3 -19.416 -4.588 6.695 1 27.19 ? C2 SMM 368 A 1 HETATM 15 N N1 SMM . . . C 3 -20.305 -3.714 6.206 1 27.05 ? N1 SMM 368 A 1 HETATM 16 C C6 SMM . . . C 3 -20.114 -3.224 4.961 1 28.53 ? C6 SMM 368 A 1 HETATM 17 N N6 SMM . . . C 3 -20.997 -2.346 4.475 1 27.43 ? N6 SMM 368 A 1 HETATM 18 C C5 SMM . . . C 3 -18.985 -3.67 4.25 1 28.45 ? C5 SMM 368 A 1 HETATM 19 N N7 SMM . . . C 3 -18.503 -3.378 2.979 1 27.56 ? N7 SMM 368 A 1 HETATM 20 C C8 SMM . . . C 3 -17.409 -4.096 2.886 1 29.27 ? C8 SMM 368 A 1 HETATM 21 C C2' SMM . . . C 3 -15.097 -5.263 5.385 1 27.1 ? C2' SMM 368 A 1 HETATM 22 O O2' SMM . . . C 3 -14.146 -4.326 4.921 1 29.84 ? O2' SMM 368 A 1 HETATM 23 C C3' SMM . . . C 3 -14.478 -6.584 5.814 1 29.2 ? C3' SMM 368 A 1 HETATM 24 O O3' SMM . . . C 3 -13.463 -6.97 4.888 1 24.11 ? O3' SMM 368 A 1 HETATM 25 C C SMM . . . C 3 -21.372 -7.198 9.806 1 26.01 ? C SMM 368 A 1 HETATM 26 O O SMM . . . C 3 -20.913 -6.273 9.092 1 27.95 ? O SMM 368 A 1 HETATM 27 O OXT SMM . . . C 3 -22.224 -7.028 10.714 1 26.29 ? OXT SMM 368 A 1 HETATM 28 C CXT SMM . . . C 3 -21.899 -6.139 11.623 1 23.21 ? CXT SMM 368 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #