data_1I7C
#
_model_server_result.job_id            LGBSeIzpf4-FPRbXgajJGw 
_model_server_result.datetime_utc      '2024-11-13 12:11:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1i7c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":375}' 
#
_entry.id    1I7C 
#
_exptl.entry_id    1I7C 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              184.202 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'METHYLGLYOXAL BIS-(GUANYLHYDRAZONE)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.24 
_cell.angle_gamma         90 
_cell.entry_id            1I7C 
_cell.length_a            97.057 
_cell.length_b            45.499 
_cell.length_c            72.143 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1I7C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2 
A,B,C,D,E,F 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.963713 0 69.605963 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             1 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             2 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.331 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C5 H12 N8' 
_chem_comp.formula_weight    184.202 
_chem_comp.id                MGB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'METHYLGLYOXAL BIS-(GUANYLHYDRAZONE)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C3 MGB sing 237 n n 
N1 H11 MGB sing 238 n n 
N1 H12 MGB sing 239 n n 
N2 C3 MGB doub 240 n n 
N2 H21 MGB sing 241 n n 
C3 N4 MGB sing 242 n n 
N4 N5 MGB sing 243 n n 
N4 H41 MGB sing 244 n n 
N5 C6 MGB doub 245 n n 
C6 C7 MGB sing 246 n n 
C6 H61 MGB sing 247 n n 
C7 C8 MGB sing 248 n n 
C7 N9 MGB doub 249 e n 
C8 H81 MGB sing 250 n n 
C8 H82 MGB sing 251 n n 
C8 H83 MGB sing 252 n n 
N9 N10 MGB sing 253 n n 
N10 C11 MGB sing 254 n n 
N10 H101 MGB sing 255 n n 
C11 N12 MGB doub 256 n n 
C11 N13 MGB sing 257 n n 
N12 H121 MGB sing 258 n n 
N13 H131 MGB sing 259 n n 
N13 H132 MGB sing 260 n n 
#
_atom_sites.entry_id                     1I7C 
_atom_sites.fract_transf_matrix[1][1]    0.010303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002806 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021979 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT A 1 350 350 PUT PUT . 
D 4 MGB A 1 375 375 MGB MGB . 
E 5 HOH B 1 404 404 HOH HOH . 
E 5 HOH B 2 411 411 HOH HOH . 
E 5 HOH B 3 418 418 HOH HOH . 
E 5 HOH B 4 423 423 HOH HOH . 
E 5 HOH B 5 430 430 HOH HOH . 
E 5 HOH B 6 436 436 HOH HOH . 
E 5 HOH B 7 438 438 HOH HOH . 
E 5 HOH B 8 439 439 HOH HOH . 
E 5 HOH B 9 442 442 HOH HOH . 
E 5 HOH B 10 443 443 HOH HOH . 
E 5 HOH B 11 458 458 HOH HOH . 
E 5 HOH B 12 461 461 HOH HOH . 
E 5 HOH B 13 463 463 HOH HOH . 
E 5 HOH B 14 465 465 HOH HOH . 
F 5 HOH A 1 401 401 HOH HOH . 
F 5 HOH A 2 402 402 HOH HOH . 
F 5 HOH A 3 403 403 HOH HOH . 
F 5 HOH A 4 405 405 HOH HOH . 
F 5 HOH A 5 406 406 HOH HOH . 
F 5 HOH A 6 407 407 HOH HOH . 
F 5 HOH A 7 408 408 HOH HOH . 
F 5 HOH A 8 409 409 HOH HOH . 
F 5 HOH A 9 410 410 HOH HOH . 
F 5 HOH A 10 412 412 HOH HOH . 
F 5 HOH A 11 413 413 HOH HOH . 
F 5 HOH A 12 414 414 HOH HOH . 
F 5 HOH A 13 415 415 HOH HOH . 
F 5 HOH A 14 416 416 HOH HOH . 
F 5 HOH A 15 417 417 HOH HOH . 
F 5 HOH A 16 419 419 HOH HOH . 
F 5 HOH A 17 420 420 HOH HOH . 
F 5 HOH A 18 421 421 HOH HOH . 
F 5 HOH A 19 422 422 HOH HOH . 
F 5 HOH A 20 424 424 HOH HOH . 
F 5 HOH A 21 425 425 HOH HOH . 
F 5 HOH A 22 426 426 HOH HOH . 
F 5 HOH A 23 427 427 HOH HOH . 
F 5 HOH A 24 428 428 HOH HOH . 
F 5 HOH A 25 429 429 HOH HOH . 
F 5 HOH A 26 431 431 HOH HOH . 
F 5 HOH A 27 432 432 HOH HOH . 
F 5 HOH A 28 433 433 HOH HOH . 
F 5 HOH A 29 434 434 HOH HOH . 
F 5 HOH A 30 435 435 HOH HOH . 
F 5 HOH A 31 437 437 HOH HOH . 
F 5 HOH A 32 440 440 HOH HOH . 
F 5 HOH A 33 441 441 HOH HOH . 
F 5 HOH A 34 444 444 HOH HOH . 
F 5 HOH A 35 445 445 HOH HOH . 
F 5 HOH A 36 446 446 HOH HOH . 
F 5 HOH A 37 447 447 HOH HOH . 
F 5 HOH A 38 448 448 HOH HOH . 
F 5 HOH A 39 449 449 HOH HOH . 
F 5 HOH A 40 450 450 HOH HOH . 
F 5 HOH A 41 451 451 HOH HOH . 
F 5 HOH A 42 452 452 HOH HOH . 
F 5 HOH A 43 453 453 HOH HOH . 
F 5 HOH A 44 454 454 HOH HOH . 
F 5 HOH A 45 455 455 HOH HOH . 
F 5 HOH A 46 456 456 HOH HOH . 
F 5 HOH A 47 457 457 HOH HOH . 
F 5 HOH A 48 459 459 HOH HOH . 
F 5 HOH A 49 460 460 HOH HOH . 
F 5 HOH A 50 462 462 HOH HOH . 
F 5 HOH A 51 464 464 HOH HOH . 
F 5 HOH A 52 466 466 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MGB . . . D 4 -12.954 -4.6 6.696 1 26.61 ? N1 MGB 375 A 1 
HETATM 2 N N2 MGB . . . D 4 -13.346 -2.528 5.659 1 26.03 ? N2 MGB 375 A 1 
HETATM 3 C C3 MGB . . . D 4 -13.776 -3.744 6.048 1 27.36 ? C3 MGB 375 A 1 
HETATM 4 N N4 MGB . . . D 4 -15.067 -4.089 5.76 1 27.18 ? N4 MGB 375 A 1 
HETATM 5 N N5 MGB . . . D 4 -15.46 -5.226 6.682 1 27.98 ? N5 MGB 375 A 1 
HETATM 6 C C6 MGB . . . D 4 -16.72 -5.849 6.553 1 28.31 ? C6 MGB 375 A 1 
HETATM 7 C C7 MGB . . . D 4 -17.074 -6.756 7.27 1 28.54 ? C7 MGB 375 A 1 
HETATM 8 C C8 MGB . . . D 4 -16.337 -7.917 7.149 1 27.52 ? C8 MGB 375 A 1 
HETATM 9 N N9 MGB . . . D 4 -18.476 -6.968 7.227 1 27.05 ? N9 MGB 375 A 1 
HETATM 10 N N10 MGB . . . D 4 -19.227 -7.568 8.386 1 26.97 ? N10 MGB 375 A 1 
HETATM 11 C C11 MGB . . . D 4 -20.558 -7.578 8.085 1 26.4 ? C11 MGB 375 A 1 
HETATM 12 N N12 MGB . . . D 4 -21.201 -8.769 8.074 1 24.62 ? N12 MGB 375 A 1 
HETATM 13 N N13 MGB . . . D 4 -21.209 -6.436 7.803 1 25.46 ? N13 MGB 375 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           13 
#