data_1I7J # _model_server_result.job_id tTqLLv6GW0L4MZxBHOPRRQ _model_server_result.datetime_utc '2024-12-21 05:46:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 1I7J # _exptl.entry_id 1I7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1I7J _cell.length_a 24.805 _cell.length_b 24.805 _cell.length_c 77.372 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' OMC 1 A OMC 1 1_555 A P OMG 2 A OMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale2 A O3' OMG 2 A OMG 2 1_555 A P OMC 3 A OMC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale3 A O3' OMC 3 A OMC 3 1_555 A P OMG 4 A OMG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale4 A O3' OMG 4 A OMG 4 1_555 A P OMC 5 A OMC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale5 A O3' OMC 5 A OMC 5 1_555 A P OMG 6 A OMG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale6 B O3' OMC 1 B OMC 1 1_555 B P OMG 2 B OMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale7 B O3' OMG 2 B OMG 2 1_555 B P OMC 3 B OMC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? covale ? covale8 B O3' OMC 3 B OMC 3 1_555 B P OMG 4 B OMG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale9 B O3' OMG 4 B OMG 4 1_555 B P OMC 5 B OMC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale10 B O3' OMC 5 B OMC 5 1_555 B P OMG 6 B OMG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 A OP1 OMG 2 A OMG 2 1_555 C MG MG . A MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A OP1 OMC 5 A OMC 5 1_555 D MG MG . A MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc3 C MG MG . A MG 101 1_555 J O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc4 C MG MG . A MG 101 1_555 J O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 C MG MG . A MG 101 1_555 J O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc6 D MG MG . A MG 103 1_555 J O HOH . A HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc7 D MG MG . A MG 103 1_555 J O HOH . A HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc8 D MG MG . A MG 103 1_555 K O HOH . B HOH 217 6_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc9 D MG MG . A MG 103 1_555 K O HOH . B HOH 223 6_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc10 D MG MG . A MG 103 1_555 K O HOH . B HOH 224 6_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc11 E MG MG . A MG 104 1_555 J O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc12 E MG MG . A MG 104 1_555 J O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc13 E MG MG . A MG 104 1_555 J O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc14 E MG MG . A MG 104 1_555 J O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc15 B OP1 OMG 2 B OMG 2 1_555 G MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc16 G MG MG . B MG 102 1_555 K O HOH . B HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc17 G MG MG . B MG 102 1_555 K O HOH . B HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc18 G MG MG . B MG 102 1_555 K O HOH . B HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc19 G MG MG . B MG 102 1_555 K O HOH . B HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc20 G MG MG . B MG 102 1_555 K O HOH . B HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc21 H MG MG . B MG 105 1_555 K O HOH . B HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc22 H MG MG . B MG 105 1_555 K O HOH . B HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc23 H MG MG . B MG 105 1_555 K O HOH . B HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc24 H MG MG . B MG 105 1_555 K O HOH . B HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? hydrog WATSON-CRICK hydrog1 A N3 OMC 1 A OMC 1 1_555 B N1 OMG 6 B OMG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 OMC 1 A OMC 1 1_555 B O6 OMG 6 B OMG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 OMC 1 A OMC 1 1_555 B N2 OMG 6 B OMG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 OMG 2 A OMG 2 1_555 B N3 OMC 5 B OMC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 OMG 2 A OMG 2 1_555 B O2 OMC 5 B OMC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 OMG 2 A OMG 2 1_555 B N4 OMC 5 B OMC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 OMC 3 A OMC 3 1_555 B N1 OMG 4 B OMG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 OMC 3 A OMC 3 1_555 B O6 OMG 4 B OMG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 OMC 3 A OMC 3 1_555 B N2 OMG 4 B OMG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 OMG 4 A OMG 4 1_555 B N3 OMC 3 B OMC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 OMG 4 A OMG 4 1_555 B O2 OMC 3 B OMC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 OMG 4 A OMG 4 1_555 B N4 OMC 3 B OMC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 OMC 5 A OMC 5 1_555 B N1 OMG 2 B OMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 OMC 5 A OMC 5 1_555 B O6 OMG 2 B OMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 OMC 5 A OMC 5 1_555 B N2 OMG 2 B OMG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 OMG 6 A OMG 6 1_555 B N3 OMC 1 B OMC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 OMG 6 A OMG 6 1_555 B O2 OMC 1 B OMC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 OMG 6 A OMG 6 1_555 B N4 OMC 1 B OMC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 3 n n C1 H11 MPD sing 4 n n C1 H12 MPD sing 5 n n C1 H13 MPD sing 6 n n C2 O2 MPD sing 7 n n C2 CM MPD sing 8 n n C2 C3 MPD sing 9 n n O2 HO2 MPD sing 10 n n CM HM1 MPD sing 11 n n CM HM2 MPD sing 12 n n CM HM3 MPD sing 13 n n C3 C4 MPD sing 14 n n C3 H31 MPD sing 15 n n C3 H32 MPD sing 16 n n C4 O4 MPD sing 17 n n C4 C5 MPD sing 18 n n C4 H4 MPD sing 19 n n O4 HO4 MPD sing 20 n n C5 H51 MPD sing 21 n n C5 H52 MPD sing 22 n n C5 H53 MPD sing 23 n n # _atom_sites.entry_id 1I7J _atom_sites.fract_transf_matrix[1][1] 0.040314 _atom_sites.fract_transf_matrix[1][2] 0.023276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.046551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 101 1 MG MG . D 2 MG A 1 103 3 MG MG . E 2 MG A 1 104 4 MG MG . F 3 MPD A 1 201 1 MPD MPD . G 2 MG B 1 102 2 MG MG . H 2 MG B 1 105 5 MG MG . I 3 MPD B 1 202 2 MPD MPD . J 4 HOH A 1 202 1 HOH HOH . J 4 HOH A 2 203 4 HOH HOH . J 4 HOH A 3 204 5 HOH HOH . J 4 HOH A 4 205 6 HOH HOH . J 4 HOH A 5 206 12 HOH HOH . J 4 HOH A 6 207 13 HOH HOH . J 4 HOH A 7 208 14 HOH HOH . J 4 HOH A 8 209 15 HOH HOH . J 4 HOH A 9 210 16 HOH HOH . J 4 HOH A 10 211 17 HOH HOH . J 4 HOH A 11 212 18 HOH HOH . J 4 HOH A 12 213 20 HOH HOH . J 4 HOH A 13 214 24 HOH HOH . J 4 HOH A 14 215 26 HOH HOH . J 4 HOH A 15 216 30 HOH HOH . J 4 HOH A 16 217 32 HOH HOH . J 4 HOH A 17 218 37 HOH HOH . J 4 HOH A 18 219 38 HOH HOH . J 4 HOH A 19 220 39 HOH HOH . J 4 HOH A 20 221 40 HOH HOH . J 4 HOH A 21 222 43 HOH HOH . J 4 HOH A 22 223 44 HOH HOH . J 4 HOH A 23 224 45 HOH HOH . J 4 HOH A 24 225 46 HOH HOH . J 4 HOH A 25 226 47 HOH HOH . J 4 HOH A 26 227 48 HOH HOH . J 4 HOH A 27 228 49 HOH HOH . J 4 HOH A 28 229 51 HOH HOH . J 4 HOH A 29 230 52 HOH HOH . J 4 HOH A 30 231 55 HOH HOH . J 4 HOH A 31 232 59 HOH HOH . J 4 HOH A 32 233 61 HOH HOH . J 4 HOH A 33 234 62 HOH HOH . K 4 HOH B 1 203 2 HOH HOH . K 4 HOH B 2 204 3 HOH HOH . K 4 HOH B 3 205 7 HOH HOH . K 4 HOH B 4 206 8 HOH HOH . K 4 HOH B 5 207 9 HOH HOH . K 4 HOH B 6 208 10 HOH HOH . K 4 HOH B 7 209 11 HOH HOH . K 4 HOH B 8 210 19 HOH HOH . K 4 HOH B 9 211 21 HOH HOH . K 4 HOH B 10 212 22 HOH HOH . K 4 HOH B 11 213 23 HOH HOH . K 4 HOH B 12 214 25 HOH HOH . K 4 HOH B 13 215 27 HOH HOH . K 4 HOH B 14 216 28 HOH HOH . K 4 HOH B 15 217 29 HOH HOH . K 4 HOH B 16 218 31 HOH HOH . K 4 HOH B 17 219 33 HOH HOH . K 4 HOH B 18 220 34 HOH HOH . K 4 HOH B 19 221 35 HOH HOH . K 4 HOH B 20 222 36 HOH HOH . K 4 HOH B 21 223 41 HOH HOH . K 4 HOH B 22 224 42 HOH HOH . K 4 HOH B 23 225 50 HOH HOH . K 4 HOH B 24 226 53 HOH HOH . K 4 HOH B 25 227 54 HOH HOH . K 4 HOH B 26 228 56 HOH HOH . K 4 HOH B 27 229 57 HOH HOH . K 4 HOH B 28 230 58 HOH HOH . K 4 HOH B 29 231 60 HOH HOH . K 4 HOH B 30 232 63 HOH HOH . K 4 HOH B 31 233 64 HOH HOH . K 4 HOH B 32 234 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . I 3 -8.241 13.372 1.738 0.6 38.18 ? C1 MPD 202 B 1 HETATM 2 C C2 MPD . . . I 3 -7.903 14.113 3.034 0.6 36.4 ? C2 MPD 202 B 1 HETATM 3 O O2 MPD . . . I 3 -7.867 13.159 4.131 0.6 44.73 ? O2 MPD 202 B 1 HETATM 4 C CM MPD . . . I 3 -8.959 15.179 3.322 0.6 40.34 ? CM MPD 202 B 1 HETATM 5 C C3 MPD . . . I 3 -6.527 14.777 2.897 0.6 36.06 ? C3 MPD 202 B 1 HETATM 6 C C4 MPD . . . I 3 -5.772 15.518 3.997 0.6 37.27 ? C4 MPD 202 B 1 HETATM 7 O O4 MPD . . . I 3 -5.631 14.637 5.144 0.6 37.25 ? O4 MPD 202 B 1 HETATM 8 C C5 MPD . . . I 3 -4.324 15.724 3.572 0.6 34.14 ? C5 MPD 202 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #