data_1I7L # _model_server_result.job_id mf0SZEqAmI6Fl9wqk757CA _model_server_result.datetime_utc '2025-04-28 05:56:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 1I7L # _exptl.entry_id 1I7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1I7L _cell.length_a 121.275 _cell.length_b 121.275 _cell.length_c 165.891 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1I7L _atom_sites.fract_transf_matrix[1][1] 0.008246 _atom_sites.fract_transf_matrix[1][2] 0.004761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 800 800 ATP ATP . D 2 ATP B 1 801 800 ATP ATP . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1004 1004 HOH HOH . E 3 HOH A 5 1005 1005 HOH HOH . E 3 HOH A 6 1006 1006 HOH HOH . E 3 HOH A 7 1007 1007 HOH HOH . E 3 HOH A 8 1008 1008 HOH HOH . E 3 HOH A 9 1009 1009 HOH HOH . E 3 HOH A 10 1010 1010 HOH HOH . E 3 HOH A 11 1011 1011 HOH HOH . E 3 HOH A 12 1012 1012 HOH HOH . E 3 HOH A 13 1013 1013 HOH HOH . E 3 HOH A 14 1014 1014 HOH HOH . E 3 HOH A 15 1015 1015 HOH HOH . E 3 HOH A 16 1016 1016 HOH HOH . E 3 HOH A 17 1017 1017 HOH HOH . E 3 HOH A 18 1019 1019 HOH HOH . E 3 HOH A 19 1021 1021 HOH HOH . E 3 HOH A 20 1022 1022 HOH HOH . E 3 HOH A 21 1026 1026 HOH HOH . E 3 HOH A 22 1027 1027 HOH HOH . E 3 HOH A 23 1028 1028 HOH HOH . E 3 HOH A 24 1029 1029 HOH HOH . E 3 HOH A 25 1030 1030 HOH HOH . E 3 HOH A 26 1031 1031 HOH HOH . E 3 HOH A 27 1032 1032 HOH HOH . E 3 HOH A 28 1033 1033 HOH HOH . E 3 HOH A 29 1034 1034 HOH HOH . E 3 HOH A 30 1035 1035 HOH HOH . E 3 HOH A 31 1036 1036 HOH HOH . E 3 HOH A 32 1041 1041 HOH HOH . E 3 HOH A 33 1042 1042 HOH HOH . E 3 HOH A 34 1044 1044 HOH HOH . E 3 HOH A 35 1046 1046 HOH HOH . E 3 HOH A 36 1047 1047 HOH HOH . E 3 HOH A 37 1048 1048 HOH HOH . E 3 HOH A 38 1049 1049 HOH HOH . E 3 HOH A 39 1051 1051 HOH HOH . E 3 HOH A 40 1052 1052 HOH HOH . E 3 HOH A 41 1053 1053 HOH HOH . E 3 HOH A 42 1054 1054 HOH HOH . E 3 HOH A 43 1055 1055 HOH HOH . E 3 HOH A 44 1057 1057 HOH HOH . E 3 HOH A 45 1058 1058 HOH HOH . E 3 HOH A 46 1060 1060 HOH HOH . E 3 HOH A 47 1061 1061 HOH HOH . E 3 HOH A 48 1062 1062 HOH HOH . E 3 HOH A 49 1063 1063 HOH HOH . E 3 HOH A 50 1064 1064 HOH HOH . E 3 HOH A 51 1065 1065 HOH HOH . E 3 HOH A 52 1066 1066 HOH HOH . E 3 HOH A 53 1067 1067 HOH HOH . E 3 HOH A 54 1068 1068 HOH HOH . E 3 HOH A 55 1070 1070 HOH HOH . E 3 HOH A 56 1071 1071 HOH HOH . E 3 HOH A 57 1072 1072 HOH HOH . E 3 HOH A 58 1073 1073 HOH HOH . E 3 HOH A 59 1074 1074 HOH HOH . E 3 HOH A 60 1075 1075 HOH HOH . E 3 HOH A 61 1076 1076 HOH HOH . E 3 HOH A 62 1077 1077 HOH HOH . E 3 HOH A 63 1078 1078 HOH HOH . E 3 HOH A 64 1079 1079 HOH HOH . E 3 HOH A 65 1081 1081 HOH HOH . E 3 HOH A 66 1082 1082 HOH HOH . E 3 HOH A 67 1083 1083 HOH HOH . E 3 HOH A 68 1084 1084 HOH HOH . E 3 HOH A 69 1085 1085 HOH HOH . E 3 HOH A 70 1086 1086 HOH HOH . E 3 HOH A 71 1087 1087 HOH HOH . E 3 HOH A 72 1088 1088 HOH HOH . E 3 HOH A 73 1089 1089 HOH HOH . E 3 HOH A 74 1090 1090 HOH HOH . E 3 HOH A 75 1091 1091 HOH HOH . E 3 HOH A 76 1092 1092 HOH HOH . E 3 HOH A 77 1093 1093 HOH HOH . E 3 HOH A 78 1094 1094 HOH HOH . E 3 HOH A 79 1095 1095 HOH HOH . E 3 HOH A 80 1096 1096 HOH HOH . E 3 HOH A 81 1097 1097 HOH HOH . E 3 HOH A 82 1098 1098 HOH HOH . E 3 HOH A 83 1099 1099 HOH HOH . E 3 HOH A 84 1101 1101 HOH HOH . E 3 HOH A 85 1102 1102 HOH HOH . E 3 HOH A 86 1103 1103 HOH HOH . E 3 HOH A 87 1104 1104 HOH HOH . E 3 HOH A 88 1105 1105 HOH HOH . E 3 HOH A 89 1106 1106 HOH HOH . E 3 HOH A 90 1107 1107 HOH HOH . E 3 HOH A 91 1108 1108 HOH HOH . E 3 HOH A 92 1109 1109 HOH HOH . E 3 HOH A 93 1110 1110 HOH HOH . E 3 HOH A 94 1111 1111 HOH HOH . F 3 HOH B 1 1018 1018 HOH HOH . F 3 HOH B 2 1020 1020 HOH HOH . F 3 HOH B 3 1023 1023 HOH HOH . F 3 HOH B 4 1024 1024 HOH HOH . F 3 HOH B 5 1025 1025 HOH HOH . F 3 HOH B 6 1037 1037 HOH HOH . F 3 HOH B 7 1038 1038 HOH HOH . F 3 HOH B 8 1039 1039 HOH HOH . F 3 HOH B 9 1040 1040 HOH HOH . F 3 HOH B 10 1043 1043 HOH HOH . F 3 HOH B 11 1045 1045 HOH HOH . F 3 HOH B 12 1050 1050 HOH HOH . F 3 HOH B 13 1056 1056 HOH HOH . F 3 HOH B 14 1059 1059 HOH HOH . F 3 HOH B 15 1069 1069 HOH HOH . F 3 HOH B 16 1080 1080 HOH HOH . F 3 HOH B 17 1100 1100 HOH HOH . F 3 HOH B 18 1112 1112 HOH HOH . F 3 HOH B 19 1113 1113 HOH HOH . F 3 HOH B 20 1114 1114 HOH HOH . F 3 HOH B 21 1115 1115 HOH HOH . F 3 HOH B 22 1116 1116 HOH HOH . F 3 HOH B 23 1117 1117 HOH HOH . F 3 HOH B 24 1118 1118 HOH HOH . F 3 HOH B 25 1119 1119 HOH HOH . F 3 HOH B 26 1120 1120 HOH HOH . F 3 HOH B 27 1121 1121 HOH HOH . F 3 HOH B 28 1122 1122 HOH HOH . F 3 HOH B 29 1123 1123 HOH HOH . F 3 HOH B 30 1124 1124 HOH HOH . F 3 HOH B 31 1125 1125 HOH HOH . F 3 HOH B 32 1126 1126 HOH HOH . F 3 HOH B 33 1127 1127 HOH HOH . F 3 HOH B 34 1128 1128 HOH HOH . F 3 HOH B 35 1129 1129 HOH HOH . F 3 HOH B 36 1130 1130 HOH HOH . F 3 HOH B 37 1131 1131 HOH HOH . F 3 HOH B 38 1132 1132 HOH HOH . F 3 HOH B 39 1133 1133 HOH HOH . F 3 HOH B 40 1134 1134 HOH HOH . F 3 HOH B 41 1135 1135 HOH HOH . F 3 HOH B 42 1136 1136 HOH HOH . F 3 HOH B 43 1137 1137 HOH HOH . F 3 HOH B 44 1138 1138 HOH HOH . F 3 HOH B 45 1139 1139 HOH HOH . F 3 HOH B 46 1140 1140 HOH HOH . F 3 HOH B 47 1141 1141 HOH HOH . F 3 HOH B 48 1142 1142 HOH HOH . F 3 HOH B 49 1143 1143 HOH HOH . F 3 HOH B 50 1144 1144 HOH HOH . F 3 HOH B 51 1145 1145 HOH HOH . F 3 HOH B 52 1146 1146 HOH HOH . F 3 HOH B 53 1147 1147 HOH HOH . F 3 HOH B 54 1148 1148 HOH HOH . F 3 HOH B 55 1149 1149 HOH HOH . F 3 HOH B 56 1150 1150 HOH HOH . F 3 HOH B 57 1151 1151 HOH HOH . F 3 HOH B 58 1152 1152 HOH HOH . F 3 HOH B 59 1153 1153 HOH HOH . F 3 HOH B 60 1154 1154 HOH HOH . F 3 HOH B 61 1155 1155 HOH HOH . F 3 HOH B 62 1156 1156 HOH HOH . F 3 HOH B 63 1157 1157 HOH HOH . F 3 HOH B 64 1158 1158 HOH HOH . F 3 HOH B 65 1159 1159 HOH HOH . F 3 HOH B 66 1160 1160 HOH HOH . F 3 HOH B 67 1161 1161 HOH HOH . F 3 HOH B 68 1162 1162 HOH HOH . F 3 HOH B 69 1163 1163 HOH HOH . F 3 HOH B 70 1164 1164 HOH HOH . F 3 HOH B 71 1165 1165 HOH HOH . F 3 HOH B 72 1166 1166 HOH HOH . F 3 HOH B 73 1167 1167 HOH HOH . F 3 HOH B 74 1168 1168 HOH HOH . F 3 HOH B 75 1169 1169 HOH HOH . F 3 HOH B 76 1170 1170 HOH HOH . F 3 HOH B 77 1171 1171 HOH HOH . F 3 HOH B 78 1172 1172 HOH HOH . F 3 HOH B 79 1173 1173 HOH HOH . F 3 HOH B 80 1174 1174 HOH HOH . F 3 HOH B 81 1175 1175 HOH HOH . F 3 HOH B 82 1176 1176 HOH HOH . F 3 HOH B 83 1177 1177 HOH HOH . F 3 HOH B 84 1178 1178 HOH HOH . F 3 HOH B 85 1179 1179 HOH HOH . F 3 HOH B 86 1180 1180 HOH HOH . F 3 HOH B 87 1181 1181 HOH HOH . F 3 HOH B 88 1182 1182 HOH HOH . F 3 HOH B 89 1183 1183 HOH HOH . F 3 HOH B 90 1184 1184 HOH HOH . F 3 HOH B 91 1185 1185 HOH HOH . F 3 HOH B 92 1186 1186 HOH HOH . F 3 HOH B 93 1187 1187 HOH HOH . F 3 HOH B 94 1188 1188 HOH HOH . F 3 HOH B 95 1189 1189 HOH HOH . F 3 HOH B 96 1190 1190 HOH HOH . F 3 HOH B 97 1191 1191 HOH HOH . F 3 HOH B 98 1192 1192 HOH HOH . F 3 HOH B 99 1193 1193 HOH HOH . F 3 HOH B 100 1194 1194 HOH HOH . F 3 HOH B 101 1195 1195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 20.283 61.168 14.876 1 69.28 ? PG ATP 800 A 1 HETATM 2 O O1G ATP . . . C 2 19.761 61.058 16.267 1 70.79 ? O1G ATP 800 A 1 HETATM 3 O O2G ATP . . . C 2 19.281 60.935 13.81 1 70.27 ? O2G ATP 800 A 1 HETATM 4 O O3G ATP . . . C 2 21.196 62.355 14.661 1 69.64 ? O3G ATP 800 A 1 HETATM 5 P PB ATP . . . C 2 22.415 59.285 15.648 1 64.22 ? PB ATP 800 A 1 HETATM 6 O O1B ATP . . . C 2 21.837 58.249 16.572 1 64.11 ? O1B ATP 800 A 1 HETATM 7 O O2B ATP . . . C 2 23.12 60.444 16.244 1 65.75 ? O2B ATP 800 A 1 HETATM 8 O O3B ATP . . . C 2 21.196 59.844 14.719 1 66.27 ? O3B ATP 800 A 1 HETATM 9 P PA ATP . . . C 2 24.675 57.705 14.511 1 58.13 ? PA ATP 800 A 1 HETATM 10 O O1A ATP . . . C 2 25.457 58.241 13.376 1 56.24 ? O1A ATP 800 A 1 HETATM 11 O O2A ATP . . . C 2 25.289 57.607 15.851 1 56.95 ? O2A ATP 800 A 1 HETATM 12 O O3A ATP . . . C 2 23.285 58.512 14.579 1 61.4 ? O3A ATP 800 A 1 HETATM 13 O O5' ATP . . . C 2 24.183 56.289 14.096 1 58.91 ? O5' ATP 800 A 1 HETATM 14 C C5' ATP . . . C 2 23.118 56.067 13.134 1 58.44 ? C5' ATP 800 A 1 HETATM 15 C C4' ATP . . . C 2 22.317 54.835 13.519 1 58.8 ? C4' ATP 800 A 1 HETATM 16 O O4' ATP . . . C 2 23.222 53.699 13.358 1 56.32 ? O4' ATP 800 A 1 HETATM 17 C C3' ATP . . . C 2 21.852 54.807 14.968 1 58.27 ? C3' ATP 800 A 1 HETATM 18 O O3' ATP . . . C 2 20.444 54.537 15.104 1 57.8 ? O3' ATP 800 A 1 HETATM 19 C C2' ATP . . . C 2 22.709 53.784 15.607 1 57.14 ? C2' ATP 800 A 1 HETATM 20 O O2' ATP . . . C 2 22.067 53.033 16.606 1 59.7 ? O2' ATP 800 A 1 HETATM 21 C C1' ATP . . . C 2 23.086 52.821 14.459 1 56.31 ? C1' ATP 800 A 1 HETATM 22 N N9 ATP . . . C 2 24.37 52.174 14.677 1 53.71 ? N9 ATP 800 A 1 HETATM 23 C C8 ATP . . . C 2 25.558 52.751 14.961 1 54.07 ? C8 ATP 800 A 1 HETATM 24 N N7 ATP . . . C 2 26.56 51.928 15.117 1 54.64 ? N7 ATP 800 A 1 HETATM 25 C C5 ATP . . . C 2 25.976 50.714 14.915 1 53.19 ? C5 ATP 800 A 1 HETATM 26 C C6 ATP . . . C 2 26.492 49.415 14.942 1 50.5 ? C6 ATP 800 A 1 HETATM 27 N N6 ATP . . . C 2 27.763 49.203 15.204 1 50.89 ? N6 ATP 800 A 1 HETATM 28 N N1 ATP . . . C 2 25.664 48.387 14.696 1 50.69 ? N1 ATP 800 A 1 HETATM 29 C C2 ATP . . . C 2 24.369 48.622 14.434 1 51.15 ? C2 ATP 800 A 1 HETATM 30 N N3 ATP . . . C 2 23.733 49.814 14.381 1 53.4 ? N3 ATP 800 A 1 HETATM 31 C C4 ATP . . . C 2 24.624 50.842 14.638 1 54.07 ? C4 ATP 800 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #