data_1I7Y
#
_model_server_result.job_id            qUalp6e8NxFPzcqfduUV_A 
_model_server_result.datetime_utc      '2024-11-28 21:26:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1i7y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":184}' 
#
_entry.id    1I7Y 
#
_exptl.entry_id    1I7Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1I7Y 
_cell.length_a            188.432 
_cell.length_b            188.432 
_cell.length_c            61.276 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1I7Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 282.648 163.186899 0 
3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 326.373798 0 
4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 326.373798 0 
6 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 282.648 163.186899 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
covale ? covale2 B SG CYS 82 B CYS 84 1_555 D CAC CYC . B CYC 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
covale ? covale3 B SG CYS 153 B CYS 155 1_555 E CAC CYC . B CYC 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     1I7Y 
_atom_sites.fract_transf_matrix[1][1]    0.005307 
_atom_sites.fract_transf_matrix[1][2]    0.003064 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006128 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CYC A 1 184 184 CYC CYC . 
D 3 CYC B 1 284 284 CYC CYC . 
E 3 CYC B 1 355 355 CYC CYC . 
F 4 HOH A 1 185 2 HOH WAT . 
F 4 HOH A 2 186 4 HOH WAT . 
F 4 HOH A 3 187 5 HOH WAT . 
F 4 HOH A 4 188 7 HOH WAT . 
F 4 HOH A 5 189 10 HOH WAT . 
F 4 HOH A 6 190 11 HOH WAT . 
F 4 HOH A 7 191 12 HOH WAT . 
F 4 HOH A 8 192 13 HOH WAT . 
F 4 HOH A 9 193 14 HOH WAT . 
F 4 HOH A 10 194 15 HOH WAT . 
F 4 HOH A 11 195 16 HOH WAT . 
F 4 HOH A 12 196 18 HOH WAT . 
F 4 HOH A 13 197 20 HOH WAT . 
F 4 HOH A 14 198 22 HOH WAT . 
F 4 HOH A 15 199 24 HOH WAT . 
F 4 HOH A 16 200 26 HOH WAT . 
F 4 HOH A 17 201 27 HOH WAT . 
F 4 HOH A 18 202 28 HOH WAT . 
F 4 HOH A 19 203 29 HOH WAT . 
F 4 HOH A 20 204 30 HOH WAT . 
F 4 HOH A 21 205 31 HOH WAT . 
F 4 HOH A 22 206 32 HOH WAT . 
F 4 HOH A 23 207 33 HOH WAT . 
F 4 HOH A 24 208 34 HOH WAT . 
F 4 HOH A 25 209 36 HOH WAT . 
F 4 HOH A 26 210 38 HOH WAT . 
F 4 HOH A 27 211 39 HOH WAT . 
F 4 HOH A 28 212 41 HOH WAT . 
F 4 HOH A 29 213 43 HOH WAT . 
F 4 HOH A 30 214 45 HOH WAT . 
F 4 HOH A 31 215 46 HOH WAT . 
F 4 HOH A 32 216 47 HOH WAT . 
F 4 HOH A 33 217 48 HOH WAT . 
F 4 HOH A 34 218 49 HOH WAT . 
F 4 HOH A 35 219 53 HOH WAT . 
F 4 HOH A 36 220 56 HOH WAT . 
F 4 HOH A 37 221 60 HOH WAT . 
F 4 HOH A 38 222 62 HOH WAT . 
F 4 HOH A 39 223 63 HOH WAT . 
F 4 HOH A 40 224 65 HOH WAT . 
F 4 HOH A 41 225 67 HOH WAT . 
F 4 HOH A 42 226 70 HOH WAT . 
F 4 HOH A 43 227 71 HOH WAT . 
F 4 HOH A 44 228 77 HOH WAT . 
F 4 HOH A 45 229 78 HOH WAT . 
F 4 HOH A 46 230 80 HOH WAT . 
F 4 HOH A 47 231 81 HOH WAT . 
F 4 HOH A 48 232 84 HOH WAT . 
F 4 HOH A 49 233 85 HOH WAT . 
F 4 HOH A 50 234 86 HOH WAT . 
F 4 HOH A 51 235 87 HOH WAT . 
F 4 HOH A 52 236 96 HOH WAT . 
F 4 HOH A 53 237 98 HOH WAT . 
F 4 HOH A 54 238 100 HOH WAT . 
F 4 HOH A 55 239 101 HOH WAT . 
G 4 HOH B 1 356 3 HOH WAT . 
G 4 HOH B 2 357 6 HOH WAT . 
G 4 HOH B 3 358 8 HOH WAT . 
G 4 HOH B 4 359 9 HOH WAT . 
G 4 HOH B 5 360 17 HOH WAT . 
G 4 HOH B 6 361 19 HOH WAT . 
G 4 HOH B 7 362 21 HOH WAT . 
G 4 HOH B 8 363 23 HOH WAT . 
G 4 HOH B 9 364 25 HOH WAT . 
G 4 HOH B 10 365 35 HOH WAT . 
G 4 HOH B 11 366 37 HOH WAT . 
G 4 HOH B 12 367 40 HOH WAT . 
G 4 HOH B 13 368 44 HOH WAT . 
G 4 HOH B 14 369 54 HOH WAT . 
G 4 HOH B 15 370 55 HOH WAT . 
G 4 HOH B 16 371 58 HOH WAT . 
G 4 HOH B 17 372 59 HOH WAT . 
G 4 HOH B 18 373 66 HOH WAT . 
G 4 HOH B 19 374 68 HOH WAT . 
G 4 HOH B 20 375 72 HOH WAT . 
G 4 HOH B 21 376 73 HOH WAT . 
G 4 HOH B 22 377 75 HOH WAT . 
G 4 HOH B 23 378 76 HOH WAT . 
G 4 HOH B 24 379 79 HOH WAT . 
G 4 HOH B 25 380 82 HOH WAT . 
G 4 HOH B 26 381 83 HOH WAT . 
G 4 HOH B 27 382 88 HOH WAT . 
G 4 HOH B 28 383 90 HOH WAT . 
G 4 HOH B 29 384 91 HOH WAT . 
G 4 HOH B 30 385 93 HOH WAT . 
G 4 HOH B 31 386 99 HOH WAT . 
G 4 HOH B 32 387 102 HOH WAT . 
G 4 HOH B 33 388 103 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . C 3 111.485 127.475 13.355 1 20.51 ? CHA CYC 184 A 1 
HETATM 2 N NA CYC . . . C 3 109.256 127.85 12.573 1 20.95 ? NA CYC 184 A 1 
HETATM 3 C C1A CYC . . . C 3 110.401 128.305 13.126 1 21.55 ? C1A CYC 184 A 1 
HETATM 4 C C2A CYC . . . C 3 110.278 129.7 13.463 1 20.96 ? C2A CYC 184 A 1 
HETATM 5 C C3A CYC . . . C 3 109.005 130.125 13.108 1 19.95 ? C3A CYC 184 A 1 
HETATM 6 C C4A CYC . . . C 3 108.353 128.909 12.534 1 20.19 ? C4A CYC 184 A 1 
HETATM 7 C CMA CYC . . . C 3 108.463 131.56 13.304 1 17.73 ? CMA CYC 184 A 1 
HETATM 8 C CAA CYC . . . C 3 111.38 130.557 14.112 1 19.59 ? CAA CYC 184 A 1 
HETATM 9 C CBA CYC . . . C 3 111.153 130.829 15.609 1 19.58 ? CBA CYC 184 A 1 
HETATM 10 C CGA CYC . . . C 3 111.15 129.564 16.446 1 20.48 ? CGA CYC 184 A 1 
HETATM 11 O O1A CYC . . . C 3 110.03 129.133 16.814 1 19.38 ? O1A CYC 184 A 1 
HETATM 12 O O2A CYC . . . C 3 112.238 128.996 16.722 1 16.13 ? O2A CYC 184 A 1 
HETATM 13 C CHB CYC . . . C 3 107.031 128.713 12 1 18.68 ? CHB CYC 184 A 1 
HETATM 14 N NB CYC . . . C 3 105.751 129.976 13.643 1 17.18 ? NB CYC 184 A 1 
HETATM 15 C C1B CYC . . . C 3 105.821 129.194 12.508 1 16.62 ? C1B CYC 184 A 1 
HETATM 16 C C2B CYC . . . C 3 104.476 129.015 11.975 1 16.59 ? C2B CYC 184 A 1 
HETATM 17 C C3B CYC . . . C 3 103.601 129.706 12.788 1 17.71 ? C3B CYC 184 A 1 
HETATM 18 C C4B CYC . . . C 3 104.432 130.276 13.795 1 18.94 ? C4B CYC 184 A 1 
HETATM 19 C CMB CYC . . . C 3 104.14 128.222 10.752 1 13.96 ? CMB CYC 184 A 1 
HETATM 20 C CAB CYC . . . C 3 102.059 129.814 12.617 1 16.79 ? CAB CYC 184 A 1 
HETATM 21 C CBB CYC . . . C 3 101.267 129.367 13.813 1 15.24 ? CBB CYC 184 A 1 
HETATM 22 O OB CYC . . . C 3 104.002 130.971 14.709 1 18.15 ? OB CYC 184 A 1 
HETATM 23 N NC CYC . . . C 3 113.539 122.281 9.689 1 15.43 ? NC CYC 184 A 1 
HETATM 24 C C1C CYC . . . C 3 113.757 121.254 8.871 1 17.55 ? C1C CYC 184 A 1 
HETATM 25 C C2C CYC . . . C 3 112.54 120.701 8.171 1 16.93 ? C2C CYC 184 A 1 
HETATM 26 C C3C CYC . . . C 3 111.472 121.691 8.69 1 15.76 ? C3C CYC 184 A 1 
HETATM 27 C C4C CYC . . . C 3 112.167 122.616 9.671 1 16.29 ? C4C CYC 184 A 1 
HETATM 28 C CMC CYC . . . C 3 112.571 120.473 6.669 1 22.88 ? CMC CYC 184 A 1 
HETATM 29 C CAC CYC . . . C 3 110.108 121.167 9.27 1 17.13 ? CAC CYC 184 A 1 
HETATM 30 C CBC CYC . . . C 3 109.048 121.254 8.169 1 17.75 ? CBC CYC 184 A 1 
HETATM 31 O OC CYC . . . C 3 114.918 120.811 8.594 1 16.96 ? OC CYC 184 A 1 
HETATM 32 C CHD CYC . . . C 3 111.565 123.529 10.585 1 15.58 ? CHD CYC 184 A 1 
HETATM 33 N ND CYC . . . C 3 111.287 125.499 11.818 1 19.96 ? ND CYC 184 A 1 
HETATM 34 C C1D CYC . . . C 3 112.055 124.425 11.537 1 18.44 ? C1D CYC 184 A 1 
HETATM 35 C C2D CYC . . . C 3 113.269 124.482 12.36 1 19.45 ? C2D CYC 184 A 1 
HETATM 36 C C3D CYC . . . C 3 113.192 125.64 13.119 1 19.3 ? C3D CYC 184 A 1 
HETATM 37 C C4D CYC . . . C 3 111.929 126.26 12.77 1 19.31 ? C4D CYC 184 A 1 
HETATM 38 C CMD CYC . . . C 3 114.464 123.499 12.453 1 15.02 ? CMD CYC 184 A 1 
HETATM 39 C CAD CYC . . . C 3 114.276 126.313 14.006 1 20.26 ? CAD CYC 184 A 1 
HETATM 40 C CBD CYC . . . C 3 115.184 127.295 13.278 1 23.6 ? CBD CYC 184 A 1 
HETATM 41 C CGD CYC . . . C 3 116.256 127.993 14.098 1 26.46 ? CGD CYC 184 A 1 
HETATM 42 O O1D CYC . . . C 3 117.134 128.674 13.514 1 27.5 ? O1D CYC 184 A 1 
HETATM 43 O O2D CYC . . . C 3 116.227 127.875 15.35 1 27.2 ? O2D CYC 184 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#