data_1I7Y # _model_server_result.job_id NDcP2wvJNtrk6AAnclc5cg _model_server_result.datetime_utc '2024-11-28 21:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":355}' # _entry.id 1I7Y # _exptl.entry_id 1I7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1I7Y _cell.length_a 188.432 _cell.length_b 188.432 _cell.length_c 61.276 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 282.648 163.186899 0 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 326.373798 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 326.373798 0 6 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 282.648 163.186899 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale2 B SG CYS 82 B CYS 84 1_555 D CAC CYC . B CYC 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale3 B SG CYS 153 B CYS 155 1_555 E CAC CYC . B CYC 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 1I7Y _atom_sites.fract_transf_matrix[1][1] 0.005307 _atom_sites.fract_transf_matrix[1][2] 0.003064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 184 184 CYC CYC . D 3 CYC B 1 284 284 CYC CYC . E 3 CYC B 1 355 355 CYC CYC . F 4 HOH A 1 185 2 HOH WAT . F 4 HOH A 2 186 4 HOH WAT . F 4 HOH A 3 187 5 HOH WAT . F 4 HOH A 4 188 7 HOH WAT . F 4 HOH A 5 189 10 HOH WAT . F 4 HOH A 6 190 11 HOH WAT . F 4 HOH A 7 191 12 HOH WAT . F 4 HOH A 8 192 13 HOH WAT . F 4 HOH A 9 193 14 HOH WAT . F 4 HOH A 10 194 15 HOH WAT . F 4 HOH A 11 195 16 HOH WAT . F 4 HOH A 12 196 18 HOH WAT . F 4 HOH A 13 197 20 HOH WAT . F 4 HOH A 14 198 22 HOH WAT . F 4 HOH A 15 199 24 HOH WAT . F 4 HOH A 16 200 26 HOH WAT . F 4 HOH A 17 201 27 HOH WAT . F 4 HOH A 18 202 28 HOH WAT . F 4 HOH A 19 203 29 HOH WAT . F 4 HOH A 20 204 30 HOH WAT . F 4 HOH A 21 205 31 HOH WAT . F 4 HOH A 22 206 32 HOH WAT . F 4 HOH A 23 207 33 HOH WAT . F 4 HOH A 24 208 34 HOH WAT . F 4 HOH A 25 209 36 HOH WAT . F 4 HOH A 26 210 38 HOH WAT . F 4 HOH A 27 211 39 HOH WAT . F 4 HOH A 28 212 41 HOH WAT . F 4 HOH A 29 213 43 HOH WAT . F 4 HOH A 30 214 45 HOH WAT . F 4 HOH A 31 215 46 HOH WAT . F 4 HOH A 32 216 47 HOH WAT . F 4 HOH A 33 217 48 HOH WAT . F 4 HOH A 34 218 49 HOH WAT . F 4 HOH A 35 219 53 HOH WAT . F 4 HOH A 36 220 56 HOH WAT . F 4 HOH A 37 221 60 HOH WAT . F 4 HOH A 38 222 62 HOH WAT . F 4 HOH A 39 223 63 HOH WAT . F 4 HOH A 40 224 65 HOH WAT . F 4 HOH A 41 225 67 HOH WAT . F 4 HOH A 42 226 70 HOH WAT . F 4 HOH A 43 227 71 HOH WAT . F 4 HOH A 44 228 77 HOH WAT . F 4 HOH A 45 229 78 HOH WAT . F 4 HOH A 46 230 80 HOH WAT . F 4 HOH A 47 231 81 HOH WAT . F 4 HOH A 48 232 84 HOH WAT . F 4 HOH A 49 233 85 HOH WAT . F 4 HOH A 50 234 86 HOH WAT . F 4 HOH A 51 235 87 HOH WAT . F 4 HOH A 52 236 96 HOH WAT . F 4 HOH A 53 237 98 HOH WAT . F 4 HOH A 54 238 100 HOH WAT . F 4 HOH A 55 239 101 HOH WAT . G 4 HOH B 1 356 3 HOH WAT . G 4 HOH B 2 357 6 HOH WAT . G 4 HOH B 3 358 8 HOH WAT . G 4 HOH B 4 359 9 HOH WAT . G 4 HOH B 5 360 17 HOH WAT . G 4 HOH B 6 361 19 HOH WAT . G 4 HOH B 7 362 21 HOH WAT . G 4 HOH B 8 363 23 HOH WAT . G 4 HOH B 9 364 25 HOH WAT . G 4 HOH B 10 365 35 HOH WAT . G 4 HOH B 11 366 37 HOH WAT . G 4 HOH B 12 367 40 HOH WAT . G 4 HOH B 13 368 44 HOH WAT . G 4 HOH B 14 369 54 HOH WAT . G 4 HOH B 15 370 55 HOH WAT . G 4 HOH B 16 371 58 HOH WAT . G 4 HOH B 17 372 59 HOH WAT . G 4 HOH B 18 373 66 HOH WAT . G 4 HOH B 19 374 68 HOH WAT . G 4 HOH B 20 375 72 HOH WAT . G 4 HOH B 21 376 73 HOH WAT . G 4 HOH B 22 377 75 HOH WAT . G 4 HOH B 23 378 76 HOH WAT . G 4 HOH B 24 379 79 HOH WAT . G 4 HOH B 25 380 82 HOH WAT . G 4 HOH B 26 381 83 HOH WAT . G 4 HOH B 27 382 88 HOH WAT . G 4 HOH B 28 383 90 HOH WAT . G 4 HOH B 29 384 91 HOH WAT . G 4 HOH B 30 385 93 HOH WAT . G 4 HOH B 31 386 99 HOH WAT . G 4 HOH B 32 387 102 HOH WAT . G 4 HOH B 33 388 103 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . E 3 62.498 126.989 8.727 1 34.44 ? CHA CYC 355 B 1 HETATM 2 N NA CYC . . . E 3 63.334 128.937 7.588 1 30.19 ? NA CYC 355 B 1 HETATM 3 C C1A CYC . . . E 3 63.03 127.624 7.607 1 31.31 ? C1A CYC 355 B 1 HETATM 4 C C2A CYC . . . E 3 63.323 127.028 6.331 1 30.96 ? C2A CYC 355 B 1 HETATM 5 C C3A CYC . . . E 3 63.826 128.003 5.495 1 30.31 ? C3A CYC 355 B 1 HETATM 6 C C4A CYC . . . E 3 63.827 129.24 6.325 1 30.15 ? C4A CYC 355 B 1 HETATM 7 C CMA CYC . . . E 3 64.26 127.77 4.029 1 29.08 ? CMA CYC 355 B 1 HETATM 8 C CAA CYC . . . E 3 63.1 125.553 5.964 1 32.94 ? CAA CYC 355 B 1 HETATM 9 C CBA CYC . . . E 3 61.861 125.32 5.069 1 33.86 ? CBA CYC 355 B 1 HETATM 10 C CGA CYC . . . E 3 60.567 125.721 5.74 1 36.19 ? CGA CYC 355 B 1 HETATM 11 O O1A CYC . . . E 3 60.264 125.132 6.798 1 37.2 ? O1A CYC 355 B 1 HETATM 12 O O2A CYC . . . E 3 59.86 126.622 5.228 1 37.31 ? O2A CYC 355 B 1 HETATM 13 C CHB CYC . . . E 3 64.22 130.582 6.002 1 29.43 ? CHB CYC 355 B 1 HETATM 14 N NB CYC . . . E 3 66.199 130.248 4.603 1 28.67 ? NB CYC 355 B 1 HETATM 15 C C1B CYC . . . E 3 65.28 131.064 5.23 1 28.18 ? C1B CYC 355 B 1 HETATM 16 C C2B CYC . . . E 3 65.598 132.455 4.921 1 27.47 ? C2B CYC 355 B 1 HETATM 17 C C3B CYC . . . E 3 66.703 132.463 4.103 1 26.33 ? C3B CYC 355 B 1 HETATM 18 C C4B CYC . . . E 3 67.036 131.096 3.938 1 27.34 ? C4B CYC 355 B 1 HETATM 19 C CMB CYC . . . E 3 64.825 133.651 5.42 1 25.06 ? CMB CYC 355 B 1 HETATM 20 C CAB CYC . . . E 3 67.398 133.705 3.509 1 24.71 ? CAB CYC 355 B 1 HETATM 21 C CBB CYC . . . E 3 66.981 133.986 2.093 1 20.79 ? CBB CYC 355 B 1 HETATM 22 O OB CYC . . . E 3 67.982 130.714 3.263 1 27.99 ? OB CYC 355 B 1 HETATM 23 N NC CYC . . . E 3 59.089 129.287 13.805 1 37.32 ? NC CYC 355 B 1 HETATM 24 C C1C CYC . . . E 3 58.326 129.873 14.713 1 36.22 ? C1C CYC 355 B 1 HETATM 25 C C2C CYC . . . E 3 58.727 131.285 15.107 1 37.01 ? C2C CYC 355 B 1 HETATM 26 C C3C CYC . . . E 3 59.958 131.472 14.181 1 36.46 ? C3C CYC 355 B 1 HETATM 27 C C4C CYC . . . E 3 60.121 130.158 13.413 1 36.24 ? C4C CYC 355 B 1 HETATM 28 C CMC CYC . . . E 3 57.681 132.403 15.008 1 37.21 ? CMC CYC 355 B 1 HETATM 29 C CAC CYC . . . E 3 61.34 131.912 14.807 1 35.74 ? CAC CYC 355 B 1 HETATM 30 C CBC CYC . . . E 3 61.931 133.079 14.059 1 34.18 ? CBC CYC 355 B 1 HETATM 31 O OC CYC . . . E 3 57.297 129.309 15.223 1 35.65 ? OC CYC 355 B 1 HETATM 32 C CHD CYC . . . E 3 61.148 129.772 12.505 1 35.75 ? CHD CYC 355 B 1 HETATM 33 N ND CYC . . . E 3 61.865 128.687 10.527 1 37.06 ? ND CYC 355 B 1 HETATM 34 C C1D CYC . . . E 3 61.377 128.594 11.788 1 36.97 ? C1D CYC 355 B 1 HETATM 35 C C2D CYC . . . E 3 61.199 127.186 12.122 1 38.04 ? C2D CYC 355 B 1 HETATM 36 C C3D CYC . . . E 3 61.595 126.448 11.025 1 39.22 ? C3D CYC 355 B 1 HETATM 37 C C4D CYC . . . E 3 62.015 127.404 10.021 1 37.13 ? C4D CYC 355 B 1 HETATM 38 C CMD CYC . . . E 3 60.68 126.542 13.425 1 35.72 ? CMD CYC 355 B 1 HETATM 39 C CAD CYC . . . E 3 61.635 124.908 10.812 1 44.67 ? CAD CYC 355 B 1 HETATM 40 C CBD CYC . . . E 3 62.962 124.196 10.959 1 51.4 ? CBD CYC 355 B 1 HETATM 41 C CGD CYC . . . E 3 62.875 122.708 10.688 1 57.36 ? CGD CYC 355 B 1 HETATM 42 O O1D CYC . . . E 3 62.52 121.898 11.589 1 59.15 ? O1D CYC 355 B 1 HETATM 43 O O2D CYC . . . E 3 63.161 122.333 9.524 1 58.45 ? O2D CYC 355 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #