data_1I9B # _model_server_result.job_id XqkgWAsPfBQ7LQtWi0ghtg _model_server_result.datetime_utc '2024-11-22 10:05:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1053}' # _entry.id 1I9B # _exptl.entry_id 1I9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I9B _cell.length_a 141.66 _cell.length_b 141.66 _cell.length_c 120.87 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA decameric 10 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 123 1_555 A SG CYS 143 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 194 A CYS 187 1_555 A SG CYS 195 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 B SG CYS 130 B CYS 123 1_555 B SG CYS 143 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 194 B CYS 187 1_555 B SG CYS 195 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf5 C SG CYS 130 C CYS 123 1_555 C SG CYS 143 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 194 C CYS 187 1_555 C SG CYS 195 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 D SG CYS 130 D CYS 123 1_555 D SG CYS 143 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 D SG CYS 194 D CYS 187 1_555 D SG CYS 195 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf9 E SG CYS 130 E CYS 123 1_555 E SG CYS 143 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 E SG CYS 194 E CYS 187 1_555 E SG CYS 195 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A OD1 ASP 9 A ASP 2 1_555 P CA CA . E CA 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A OD1 ASP 9 A ASP 2 1_555 P CA CA . E CA 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.465 ? metalc ? metalc3 A OD2 ASP 12 A ASP 5 1_555 P CA CA . E CA 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.98 ? metalc ? metalc4 A OD1 ASP 12 A ASP 5 1_555 P CA CA . E CA 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.179 ? metalc ? metalc5 A OD1 ASP 168 A ASP 161 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc6 A OD2 ASP 168 A ASP 161 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc7 A O VAL 183 A VAL 176 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc8 G CA CA . A CA 307 1_555 B OD1 ASP 9 B ASP 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc9 G CA CA . A CA 307 1_555 B OD1 ASP 9 B ASP 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc10 G CA CA . A CA 307 1_555 B OD2 ASP 12 B ASP 5 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc11 G CA CA . A CA 307 1_555 B OD1 ASP 12 B ASP 5 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc12 G CA CA . A CA 307 1_555 C OD2 ASP 9 C ASP 2 7_555 ? B ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc13 G CA CA . A CA 307 1_555 C OD2 ASP 9 C ASP 2 7_555 ? A ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc14 G CA CA . A CA 307 1_555 C OD2 ASP 12 C ASP 5 7_555 ? A ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc15 B OD1 ASP 168 B ASP 161 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc16 B OD2 ASP 168 B ASP 161 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc17 B OD1 ASP 182 B ASP 175 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc18 B O VAL 183 B VAL 176 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc19 C OD1 ASP 168 C ASP 161 1_555 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc20 C OD2 ASP 168 C ASP 161 1_555 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc21 C O VAL 183 C VAL 176 1_555 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc22 D OD2 ASP 9 D ASP 2 7_555 P CA CA . E CA 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.554 ? metalc ? metalc23 D OD2 ASP 9 D ASP 2 7_555 P CA CA . E CA 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.208 ? metalc ? metalc24 D OD2 ASP 12 D ASP 5 7_555 P CA CA . E CA 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.346 ? metalc ? metalc25 D OD2 ASP 168 D ASP 161 1_555 M CA CA . D CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc26 D OD1 ASP 168 D ASP 161 1_555 M CA CA . D CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc27 D O VAL 183 D VAL 176 1_555 M CA CA . D CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc28 E OD1 ASP 9 E ASP 2 1_555 Q CA CA . E CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc29 E OD2 ASP 9 E ASP 2 1_555 Q CA CA . E CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc30 E OD1 ASP 9 E ASP 2 7_555 Q CA CA . E CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc31 E OD2 ASP 9 E ASP 2 7_555 Q CA CA . E CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc32 E OD2 ASP 12 E ASP 5 1_555 Q CA CA . E CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? metalc ? metalc33 E OD2 ASP 12 E ASP 5 7_555 Q CA CA . E CA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? metalc ? metalc34 E OD1 ASP 168 E ASP 161 1_555 O CA CA . E CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc35 E OD2 ASP 168 E ASP 161 1_555 O CA CA . E CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc36 E O VAL 183 E VAL 176 1_555 O CA CA . E CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 1I9B _atom_sites.fract_transf_matrix[1][1] 0.007059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CA A 1 301 301 CA CA . G 2 CA A 1 307 307 CA CA . H 3 EPE A 1 1050 1050 EPE EPE . I 2 CA B 1 302 302 CA CA . J 3 EPE B 1 1051 1051 EPE EPE . K 2 CA C 1 303 303 CA CA . L 3 EPE C 1 1052 1052 EPE EPE . M 2 CA D 1 304 304 CA CA . N 3 EPE D 1 1053 1053 EPE EPE . O 2 CA E 1 305 305 CA CA . P 2 CA E 1 306 306 CA CA . Q 2 CA E 1 310 310 CA CA . R 3 EPE E 1 1054 1054 EPE EPE . S 4 HOH A 1 1051 1 HOH HOH . S 4 HOH A 2 1052 2 HOH HOH . S 4 HOH A 3 1053 3 HOH HOH . S 4 HOH A 4 1054 4 HOH HOH . S 4 HOH A 5 1055 19 HOH HOH . T 4 HOH B 1 1052 5 HOH HOH . T 4 HOH B 2 1053 6 HOH HOH . T 4 HOH B 3 1054 15 HOH HOH . U 4 HOH C 1 1053 7 HOH HOH . U 4 HOH C 2 1054 8 HOH HOH . U 4 HOH C 3 1055 16 HOH HOH . V 4 HOH D 1 1054 9 HOH HOH . V 4 HOH D 2 1055 10 HOH HOH . V 4 HOH D 3 1056 11 HOH HOH . V 4 HOH D 4 1057 17 HOH HOH . W 4 HOH E 1 1055 12 HOH HOH . W 4 HOH E 2 1056 13 HOH HOH . W 4 HOH E 3 1057 14 HOH HOH . W 4 HOH E 4 1058 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . N 3 67.542 54.466 25.416 1 109.69 ? N1 EPE 1053 D 1 HETATM 2 C C2 EPE . . . N 3 68.119 55.594 24.6 1 103.9 ? C2 EPE 1053 D 1 HETATM 3 C C3 EPE . . . N 3 67.882 56.928 25.251 1 98.59 ? C3 EPE 1053 D 1 HETATM 4 N N4 EPE . . . N 3 68.458 56.903 26.629 1 95.87 ? N4 EPE 1053 D 1 HETATM 5 C C5 EPE . . . N 3 67.873 55.782 27.416 1 101.02 ? C5 EPE 1053 D 1 HETATM 6 C C6 EPE . . . N 3 68.146 54.454 26.785 1 107.78 ? C6 EPE 1053 D 1 HETATM 7 C C7 EPE . . . N 3 68.238 58.213 27.341 1 91.07 ? C7 EPE 1053 D 1 HETATM 8 C C8 EPE . . . N 3 66.802 58.537 27.767 1 84.89 ? C8 EPE 1053 D 1 HETATM 9 O O8 EPE . . . N 3 66.066 59.024 26.643 1 75.4 ? O8 EPE 1053 D 1 HETATM 10 C C9 EPE . . . N 3 67.75 53.131 24.761 1 118.41 ? C9 EPE 1053 D 1 HETATM 11 C C10 EPE . . . N 3 68.456 53.118 23.404 1 124.17 ? C10 EPE 1053 D 1 HETATM 12 S S EPE . . . N 3 67.308 53.033 22.043 1 130.35 ? S EPE 1053 D 1 HETATM 13 O O1S EPE . . . N 3 66.648 54.313 21.944 1 129.88 ? O1S EPE 1053 D 1 HETATM 14 O O2S EPE . . . N 3 66.543 51.79 22.237 1 123.85 ? O2S EPE 1053 D 1 HETATM 15 O O3S EPE . . . N 3 68.096 52.773 20.796 1 130.22 ? O3S EPE 1053 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #