data_1I9G # _model_server_result.job_id H-yaK5yu9IvLxE7R3u3TLA _model_server_result.datetime_utc '2024-11-30 17:55:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1I9G # _exptl.entry_id 1I9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I9G _cell.length_a 66.42 _cell.length_b 86.79 _cell.length_c 138.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 66.42 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 66.42 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 1I9G _atom_sites.fract_transf_matrix[1][1] 0.01506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 301 301 SAM SAM . C 3 HOH A 1 302 1 HOH HOH . C 3 HOH A 2 303 2 HOH HOH . C 3 HOH A 3 304 3 HOH HOH . C 3 HOH A 4 305 4 HOH HOH . C 3 HOH A 5 306 5 HOH HOH . C 3 HOH A 6 307 6 HOH HOH . C 3 HOH A 7 308 7 HOH HOH . C 3 HOH A 8 309 8 HOH HOH . C 3 HOH A 9 310 9 HOH HOH . C 3 HOH A 10 311 10 HOH HOH . C 3 HOH A 11 312 11 HOH HOH . C 3 HOH A 12 313 12 HOH HOH . C 3 HOH A 13 314 13 HOH HOH . C 3 HOH A 14 315 14 HOH HOH . C 3 HOH A 15 316 15 HOH HOH . C 3 HOH A 16 317 16 HOH HOH . C 3 HOH A 17 318 17 HOH HOH . C 3 HOH A 18 319 18 HOH HOH . C 3 HOH A 19 320 19 HOH HOH . C 3 HOH A 20 321 20 HOH HOH . C 3 HOH A 21 322 21 HOH HOH . C 3 HOH A 22 323 22 HOH HOH . C 3 HOH A 23 324 23 HOH HOH . C 3 HOH A 24 325 24 HOH HOH . C 3 HOH A 25 326 25 HOH HOH . C 3 HOH A 26 327 26 HOH HOH . C 3 HOH A 27 328 27 HOH HOH . C 3 HOH A 28 329 28 HOH HOH . C 3 HOH A 29 330 29 HOH HOH . C 3 HOH A 30 331 30 HOH HOH . C 3 HOH A 31 332 31 HOH HOH . C 3 HOH A 32 333 32 HOH HOH . C 3 HOH A 33 334 33 HOH HOH . C 3 HOH A 34 335 34 HOH HOH . C 3 HOH A 35 336 35 HOH HOH . C 3 HOH A 36 337 36 HOH HOH . C 3 HOH A 37 338 37 HOH HOH . C 3 HOH A 38 339 38 HOH HOH . C 3 HOH A 39 340 39 HOH HOH . C 3 HOH A 40 341 40 HOH HOH . C 3 HOH A 41 342 41 HOH HOH . C 3 HOH A 42 343 42 HOH HOH . C 3 HOH A 43 344 43 HOH HOH . C 3 HOH A 44 345 44 HOH HOH . C 3 HOH A 45 346 45 HOH HOH . C 3 HOH A 46 347 46 HOH HOH . C 3 HOH A 47 348 47 HOH HOH . C 3 HOH A 48 349 48 HOH HOH . C 3 HOH A 49 350 49 HOH HOH . C 3 HOH A 50 351 50 HOH HOH . C 3 HOH A 51 352 51 HOH HOH . C 3 HOH A 52 353 52 HOH HOH . C 3 HOH A 53 354 53 HOH HOH . C 3 HOH A 54 355 54 HOH HOH . C 3 HOH A 55 356 55 HOH HOH . C 3 HOH A 56 357 56 HOH HOH . C 3 HOH A 57 358 57 HOH HOH . C 3 HOH A 58 359 58 HOH HOH . C 3 HOH A 59 360 59 HOH HOH . C 3 HOH A 60 361 60 HOH HOH . C 3 HOH A 61 362 61 HOH HOH . C 3 HOH A 62 363 62 HOH HOH . C 3 HOH A 63 364 63 HOH HOH . C 3 HOH A 64 365 64 HOH HOH . C 3 HOH A 65 366 65 HOH HOH . C 3 HOH A 66 367 66 HOH HOH . C 3 HOH A 67 368 67 HOH HOH . C 3 HOH A 68 369 68 HOH HOH . C 3 HOH A 69 370 69 HOH HOH . C 3 HOH A 70 371 70 HOH HOH . C 3 HOH A 71 372 71 HOH HOH . C 3 HOH A 72 373 72 HOH HOH . C 3 HOH A 73 374 73 HOH HOH . C 3 HOH A 74 375 74 HOH HOH . C 3 HOH A 75 376 75 HOH HOH . C 3 HOH A 76 377 76 HOH HOH . C 3 HOH A 77 378 77 HOH HOH . C 3 HOH A 78 379 78 HOH HOH . C 3 HOH A 79 380 79 HOH HOH . C 3 HOH A 80 381 80 HOH HOH . C 3 HOH A 81 382 81 HOH HOH . C 3 HOH A 82 383 82 HOH HOH . C 3 HOH A 83 384 83 HOH HOH . C 3 HOH A 84 385 84 HOH HOH . C 3 HOH A 85 386 85 HOH HOH . C 3 HOH A 86 387 86 HOH HOH . C 3 HOH A 87 388 87 HOH HOH . C 3 HOH A 88 389 88 HOH HOH . C 3 HOH A 89 390 89 HOH HOH . C 3 HOH A 90 391 90 HOH HOH . C 3 HOH A 91 392 91 HOH HOH . C 3 HOH A 92 393 92 HOH HOH . C 3 HOH A 93 394 93 HOH HOH . C 3 HOH A 94 395 94 HOH HOH . C 3 HOH A 95 396 95 HOH HOH . C 3 HOH A 96 397 96 HOH HOH . C 3 HOH A 97 398 97 HOH HOH . C 3 HOH A 98 399 98 HOH HOH . C 3 HOH A 99 400 99 HOH HOH . C 3 HOH A 100 401 100 HOH HOH . C 3 HOH A 101 402 101 HOH HOH . C 3 HOH A 102 403 102 HOH HOH . C 3 HOH A 103 404 103 HOH HOH . C 3 HOH A 104 405 104 HOH HOH . C 3 HOH A 105 406 105 HOH HOH . C 3 HOH A 106 407 106 HOH HOH . C 3 HOH A 107 408 107 HOH HOH . C 3 HOH A 108 409 108 HOH HOH . C 3 HOH A 109 410 109 HOH HOH . C 3 HOH A 110 411 110 HOH HOH . C 3 HOH A 111 412 111 HOH HOH . C 3 HOH A 112 413 112 HOH HOH . C 3 HOH A 113 414 113 HOH HOH . C 3 HOH A 114 415 114 HOH HOH . C 3 HOH A 115 416 115 HOH HOH . C 3 HOH A 116 417 116 HOH HOH . C 3 HOH A 117 418 117 HOH HOH . C 3 HOH A 118 419 118 HOH HOH . C 3 HOH A 119 420 119 HOH HOH . C 3 HOH A 120 421 120 HOH HOH . C 3 HOH A 121 422 121 HOH HOH . C 3 HOH A 122 423 122 HOH HOH . C 3 HOH A 123 424 123 HOH HOH . C 3 HOH A 124 425 124 HOH HOH . C 3 HOH A 125 426 125 HOH HOH . C 3 HOH A 126 427 126 HOH HOH . C 3 HOH A 127 428 127 HOH HOH . C 3 HOH A 128 429 128 HOH HOH . C 3 HOH A 129 430 129 HOH HOH . C 3 HOH A 130 431 130 HOH HOH . C 3 HOH A 131 432 131 HOH HOH . C 3 HOH A 132 433 132 HOH HOH . C 3 HOH A 133 434 133 HOH HOH . C 3 HOH A 134 435 134 HOH HOH . C 3 HOH A 135 436 135 HOH HOH . C 3 HOH A 136 437 136 HOH HOH . C 3 HOH A 137 438 137 HOH HOH . C 3 HOH A 138 439 138 HOH HOH . C 3 HOH A 139 440 139 HOH HOH . C 3 HOH A 140 441 140 HOH HOH . C 3 HOH A 141 442 141 HOH HOH . C 3 HOH A 142 443 142 HOH HOH . C 3 HOH A 143 444 143 HOH HOH . C 3 HOH A 144 445 144 HOH HOH . C 3 HOH A 145 446 145 HOH HOH . C 3 HOH A 146 447 146 HOH HOH . C 3 HOH A 147 448 147 HOH HOH . C 3 HOH A 148 449 148 HOH HOH . C 3 HOH A 149 450 149 HOH HOH . C 3 HOH A 150 451 150 HOH HOH . C 3 HOH A 151 452 151 HOH HOH . C 3 HOH A 152 453 152 HOH HOH . C 3 HOH A 153 454 153 HOH HOH . C 3 HOH A 154 455 154 HOH HOH . C 3 HOH A 155 456 155 HOH HOH . C 3 HOH A 156 457 156 HOH HOH . C 3 HOH A 157 458 157 HOH HOH . C 3 HOH A 158 459 158 HOH HOH . C 3 HOH A 159 460 159 HOH HOH . C 3 HOH A 160 461 160 HOH HOH . C 3 HOH A 161 462 161 HOH HOH . C 3 HOH A 162 463 162 HOH HOH . C 3 HOH A 163 464 163 HOH HOH . C 3 HOH A 164 465 164 HOH HOH . C 3 HOH A 165 466 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 21.367 -8.821 19.034 1 26.77 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . B 2 21.116 -10.194 19.459 1 27.64 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . B 2 22.454 -10.919 19.677 1 29.18 ? C SAM 301 A 1 HETATM 4 O O SAM . . . B 2 23.526 -10.398 19.334 1 26.9 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . B 2 22.424 -12.142 19.909 1 30.3 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . B 2 20.29 -10.915 18.369 1 26.9 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . B 2 18.787 -10.529 18.347 1 25.38 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . B 2 17.811 -11.571 17.184 1 24.35 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . B 2 18.218 -10.971 15.547 1 29.36 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . B 2 16.137 -10.84 17.349 1 25.56 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . B 2 15.618 -11.301 18.625 1 25.44 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . B 2 14.569 -10.318 18.981 1 25.09 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . B 2 14.894 -12.722 18.463 1 26.11 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . B 2 15.38 -13.62 19.529 1 26.04 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . B 2 13.419 -12.409 18.678 1 26.96 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . B 2 12.673 -13.43 19.322 1 26.66 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . B 2 13.421 -11.094 19.445 1 26.11 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . B 2 12.113 -10.279 19.422 1 25.77 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . B 2 11.52 -9.839 18.243 1 26 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . B 2 10.573 -8.952 18.418 1 25.13 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . B 2 10.565 -8.769 19.823 1 25.38 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . B 2 9.77 -7.949 20.656 1 27.07 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . B 2 8.814 -7.126 20.164 1 25.84 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . B 2 9.992 -8.012 21.991 1 26.87 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . B 2 10.93 -8.837 22.479 1 26.7 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . B 2 11.739 -9.666 21.809 1 26.03 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . B 2 11.492 -9.566 20.46 1 25.42 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #