data_1I9H # _model_server_result.job_id aSiOcPDbzvBzb7vkU355ZQ _model_server_result.datetime_utc '2025-03-01 07:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1i9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1I9H # _exptl.entry_id 1I9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1I9H _cell.length_a 47.121 _cell.length_b 95.16 _cell.length_c 105.304 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 47.121 0 105.304 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H20 N4 O4 S' _chem_comp.formula_weight 364.419 _chem_comp.id BNI _chem_comp.mon_nstd_flag . _chem_comp.name '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIOTINYL P-NITROANILINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C10 BNI sing 70 n n C1 O2 BNI doub 71 n n C1 N17 BNI sing 72 n n C10 C9 BNI sing 73 n n C10 H101 BNI sing 74 n n C10 H102 BNI sing 75 n n C9 C8 BNI sing 76 n n C9 H91 BNI sing 77 n n C9 H92 BNI sing 78 n n C8 C7 BNI sing 79 n n C8 H81 BNI sing 80 n n C8 H82 BNI sing 81 n n C7 C2 BNI sing 82 n n C7 H71 BNI sing 83 n n C7 H72 BNI sing 84 n n C2 C4 BNI sing 85 n n C2 S1 BNI sing 86 n n C2 H21A BNI sing 87 n n C6 C5 BNI sing 88 n n C6 S1 BNI sing 89 n n C6 H61 BNI sing 90 n n C6 H62 BNI sing 91 n n C4 C5 BNI sing 92 n n C4 N2 BNI sing 93 n n C4 HC4 BNI sing 94 n n C5 N1 BNI sing 95 n n C5 HC5 BNI sing 96 n n C3 O3 BNI doub 97 n n C3 N1 BNI sing 98 n n C3 N2 BNI sing 99 n n N1 HN11 BNI sing 100 n n N2 HN21 BNI sing 101 n n N17 C18 BNI sing 102 n n N17 H171 BNI sing 103 n n C18 C20 BNI doub 104 n y C18 C24 BNI sing 105 n y C20 C21 BNI sing 106 n y C20 H20 BNI sing 107 n n C21 C22 BNI doub 108 n y C21 H21 BNI sing 109 n n C22 C23 BNI sing 110 n y C22 N25 BNI sing 111 n n C23 C24 BNI doub 112 n y C23 H23 BNI sing 113 n n C24 H24 BNI sing 114 n n N25 O26 BNI doub 115 n n N25 O27 BNI sing 116 n n # _atom_sites.entry_id 1I9H _atom_sites.fract_transf_matrix[1][1] 0.021222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNI A 1 501 501 BNI BNI . D 2 BNI B 1 502 502 BNI BNI . E 3 HOH A 1 601 601 HOH WAT . E 3 HOH A 2 604 604 HOH WAT . E 3 HOH A 3 605 605 HOH WAT . E 3 HOH A 4 606 606 HOH WAT . E 3 HOH A 5 609 609 HOH WAT . E 3 HOH A 6 610 610 HOH WAT . E 3 HOH A 7 611 611 HOH WAT . E 3 HOH A 8 616 616 HOH WAT . E 3 HOH A 9 623 623 HOH WAT . E 3 HOH A 10 625 625 HOH WAT . E 3 HOH A 11 626 626 HOH WAT . E 3 HOH A 12 628 628 HOH WAT . E 3 HOH A 13 630 630 HOH WAT . E 3 HOH A 14 633 633 HOH WAT . E 3 HOH A 15 635 635 HOH WAT . E 3 HOH A 16 636 636 HOH WAT . E 3 HOH A 17 637 637 HOH WAT . E 3 HOH A 18 638 638 HOH WAT . E 3 HOH A 19 643 643 HOH WAT . E 3 HOH A 20 648 648 HOH WAT . E 3 HOH A 21 649 649 HOH WAT . E 3 HOH A 22 653 653 HOH WAT . E 3 HOH A 23 654 654 HOH WAT . E 3 HOH A 24 658 658 HOH WAT . E 3 HOH A 25 659 659 HOH WAT . E 3 HOH A 26 661 661 HOH WAT . E 3 HOH A 27 663 663 HOH WAT . E 3 HOH A 28 664 664 HOH WAT . E 3 HOH A 29 665 665 HOH WAT . E 3 HOH A 30 669 669 HOH WAT . E 3 HOH A 31 671 671 HOH WAT . E 3 HOH A 32 672 672 HOH WAT . E 3 HOH A 33 674 674 HOH WAT . E 3 HOH A 34 675 675 HOH WAT . E 3 HOH A 35 679 679 HOH WAT . E 3 HOH A 36 681 681 HOH WAT . E 3 HOH A 37 682 682 HOH WAT . E 3 HOH A 38 684 684 HOH WAT . E 3 HOH A 39 685 685 HOH WAT . E 3 HOH A 40 686 686 HOH WAT . E 3 HOH A 41 687 687 HOH WAT . E 3 HOH A 42 688 688 HOH WAT . E 3 HOH A 43 689 689 HOH WAT . E 3 HOH A 44 691 691 HOH WAT . E 3 HOH A 45 692 692 HOH WAT . E 3 HOH A 46 695 695 HOH WAT . E 3 HOH A 47 697 697 HOH WAT . E 3 HOH A 48 700 700 HOH WAT . E 3 HOH A 49 703 703 HOH WAT . E 3 HOH A 50 704 704 HOH WAT . E 3 HOH A 51 710 710 HOH WAT . E 3 HOH A 52 712 712 HOH WAT . E 3 HOH A 53 713 713 HOH WAT . E 3 HOH A 54 717 717 HOH WAT . E 3 HOH A 55 718 718 HOH WAT . E 3 HOH A 56 719 719 HOH WAT . E 3 HOH A 57 720 720 HOH WAT . E 3 HOH A 58 723 723 HOH WAT . E 3 HOH A 59 724 724 HOH WAT . E 3 HOH A 60 725 725 HOH WAT . E 3 HOH A 61 726 726 HOH WAT . E 3 HOH A 62 729 729 HOH WAT . E 3 HOH A 63 731 731 HOH WAT . E 3 HOH A 64 733 733 HOH WAT . E 3 HOH A 65 734 734 HOH WAT . F 3 HOH B 1 602 602 HOH WAT . F 3 HOH B 2 603 603 HOH WAT . F 3 HOH B 3 607 607 HOH WAT . F 3 HOH B 4 608 608 HOH WAT . F 3 HOH B 5 612 612 HOH WAT . F 3 HOH B 6 613 613 HOH WAT . F 3 HOH B 7 614 614 HOH WAT . F 3 HOH B 8 615 615 HOH WAT . F 3 HOH B 9 617 617 HOH WAT . F 3 HOH B 10 618 618 HOH WAT . F 3 HOH B 11 619 619 HOH WAT . F 3 HOH B 12 620 620 HOH WAT . F 3 HOH B 13 621 621 HOH WAT . F 3 HOH B 14 622 622 HOH WAT . F 3 HOH B 15 624 624 HOH WAT . F 3 HOH B 16 627 627 HOH WAT . F 3 HOH B 17 629 629 HOH WAT . F 3 HOH B 18 631 631 HOH WAT . F 3 HOH B 19 632 632 HOH WAT . F 3 HOH B 20 634 634 HOH WAT . F 3 HOH B 21 639 639 HOH WAT . F 3 HOH B 22 640 640 HOH WAT . F 3 HOH B 23 641 641 HOH WAT . F 3 HOH B 24 642 642 HOH WAT . F 3 HOH B 25 644 644 HOH WAT . F 3 HOH B 26 645 645 HOH WAT . F 3 HOH B 27 646 646 HOH WAT . F 3 HOH B 28 647 647 HOH WAT . F 3 HOH B 29 650 650 HOH WAT . F 3 HOH B 30 651 651 HOH WAT . F 3 HOH B 31 652 652 HOH WAT . F 3 HOH B 32 655 655 HOH WAT . F 3 HOH B 33 656 656 HOH WAT . F 3 HOH B 34 657 657 HOH WAT . F 3 HOH B 35 660 660 HOH WAT . F 3 HOH B 36 662 662 HOH WAT . F 3 HOH B 37 666 666 HOH WAT . F 3 HOH B 38 667 667 HOH WAT . F 3 HOH B 39 668 668 HOH WAT . F 3 HOH B 40 670 670 HOH WAT . F 3 HOH B 41 673 673 HOH WAT . F 3 HOH B 42 676 676 HOH WAT . F 3 HOH B 43 677 677 HOH WAT . F 3 HOH B 44 678 678 HOH WAT . F 3 HOH B 45 680 680 HOH WAT . F 3 HOH B 46 683 683 HOH WAT . F 3 HOH B 47 690 690 HOH WAT . F 3 HOH B 48 693 693 HOH WAT . F 3 HOH B 49 694 694 HOH WAT . F 3 HOH B 50 696 696 HOH WAT . F 3 HOH B 51 698 698 HOH WAT . F 3 HOH B 52 699 699 HOH WAT . F 3 HOH B 53 701 701 HOH WAT . F 3 HOH B 54 702 702 HOH WAT . F 3 HOH B 55 705 705 HOH WAT . F 3 HOH B 56 706 706 HOH WAT . F 3 HOH B 57 707 707 HOH WAT . F 3 HOH B 58 708 708 HOH WAT . F 3 HOH B 59 709 709 HOH WAT . F 3 HOH B 60 711 711 HOH WAT . F 3 HOH B 61 714 714 HOH WAT . F 3 HOH B 62 715 715 HOH WAT . F 3 HOH B 63 716 716 HOH WAT . F 3 HOH B 64 721 721 HOH WAT . F 3 HOH B 65 722 722 HOH WAT . F 3 HOH B 66 727 727 HOH WAT . F 3 HOH B 67 728 728 HOH WAT . F 3 HOH B 68 730 730 HOH WAT . F 3 HOH B 69 732 732 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNI . . . D 2 6.377 22.129 49.385 1 18.48 ? C1 BNI 502 B 1 HETATM 2 C C10 BNI . . . D 2 6.528 21.583 47.948 1 16.3 ? C10 BNI 502 B 1 HETATM 3 C C9 BNI . . . D 2 7.256 20.244 47.769 1 12.87 ? C9 BNI 502 B 1 HETATM 4 C C8 BNI . . . D 2 8.683 20.323 48.302 1 12.19 ? C8 BNI 502 B 1 HETATM 5 C C7 BNI . . . D 2 9.422 19.011 48.122 1 9.92 ? C7 BNI 502 B 1 HETATM 6 C C2 BNI . . . D 2 10.893 19.076 48.674 1 8.15 ? C2 BNI 502 B 1 HETATM 7 C C6 BNI . . . D 2 13.402 19.144 48.39 1 5.57 ? C6 BNI 502 B 1 HETATM 8 C C4 BNI . . . D 2 11.465 17.669 49.052 1 9.18 ? C4 BNI 502 B 1 HETATM 9 C C5 BNI . . . D 2 12.995 17.77 48.881 1 7.98 ? C5 BNI 502 B 1 HETATM 10 C C3 BNI . . . D 2 12.16 16.168 47.474 1 10.29 ? C3 BNI 502 B 1 HETATM 11 O O2 BNI . . . D 2 6.032 21.216 50.176 1 19.93 ? O2 BNI 502 B 1 HETATM 12 O O3 BNI . . . D 2 12.148 15.279 46.612 1 9.84 ? O3 BNI 502 B 1 HETATM 13 N N1 BNI . . . D 2 13.265 16.789 47.881 1 8.13 ? N1 BNI 502 B 1 HETATM 14 N N2 BNI . . . D 2 11.083 16.625 48.107 1 9.93 ? N2 BNI 502 B 1 HETATM 15 S S1 BNI . . . D 2 12.001 19.728 47.367 1 7.41 ? S1 BNI 502 B 1 HETATM 16 N N17 BNI . . . D 2 7.201 23.105 49.8 1 18.97 ? N17 BNI 502 B 1 HETATM 17 C C18 BNI . . . D 2 7.319 23.768 50.995 1 20.01 ? C18 BNI 502 B 1 HETATM 18 C C20 BNI . . . D 2 6.85 25.105 51.23 1 21.07 ? C20 BNI 502 B 1 HETATM 19 C C21 BNI . . . D 2 7.048 25.706 52.541 1 21.87 ? C21 BNI 502 B 1 HETATM 20 C C22 BNI . . . D 2 7.717 24.952 53.604 1 22.19 ? C22 BNI 502 B 1 HETATM 21 C C23 BNI . . . D 2 8.173 23.622 53.347 1 20.8 ? C23 BNI 502 B 1 HETATM 22 C C24 BNI . . . D 2 7.979 23.041 52.066 1 20.22 ? C24 BNI 502 B 1 HETATM 23 N N25 BNI . . . D 2 7.943 25.551 54.984 1 23.67 ? N25 BNI 502 B 1 HETATM 24 O O26 BNI . . . D 2 7.582 26.663 55.252 1 24.29 ? O26 BNI 502 B 1 HETATM 25 O O27 BNI . . . D 2 8.495 24.921 55.849 1 23.32 ? O27 BNI 502 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #