data_1IA0 # _model_server_result.job_id IaaTy86Bg01oZnFx11egRw _model_server_result.datetime_utc '2025-02-27 12:11:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ia0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1IA0 # _exptl.entry_id 1IA0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IA0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG SER 120 K SER 104 1_555 G MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 G MG MG . K MG 501 1_555 H O2G ACP . K ACP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 G MG MG . K MG 501 1_555 H O1B ACP . K ACP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 225 n n PG O2G GTP sing 226 n n PG O3G GTP sing 227 n n PG O3B GTP sing 228 n n O2G HOG2 GTP sing 229 n n O3G HOG3 GTP sing 230 n n O3B PB GTP sing 231 n n PB O1B GTP doub 232 n n PB O2B GTP sing 233 n n PB O3A GTP sing 234 n n O2B HOB2 GTP sing 235 n n O3A PA GTP sing 236 n n PA O1A GTP doub 237 n n PA O2A GTP sing 238 n n PA O5' GTP sing 239 n n O2A HOA2 GTP sing 240 n n O5' C5' GTP sing 241 n n C5' C4' GTP sing 242 n n C5' H5' GTP sing 243 n n C5' "H5''" GTP sing 244 n n C4' O4' GTP sing 245 n n C4' C3' GTP sing 246 n n C4' H4' GTP sing 247 n n O4' C1' GTP sing 248 n n C3' O3' GTP sing 249 n n C3' C2' GTP sing 250 n n C3' H3' GTP sing 251 n n O3' HO3' GTP sing 252 n n C2' O2' GTP sing 253 n n C2' C1' GTP sing 254 n n C2' H2' GTP sing 255 n n O2' HO2' GTP sing 256 n n C1' N9 GTP sing 257 n n C1' H1' GTP sing 258 n n N9 C8 GTP sing 259 n y N9 C4 GTP sing 260 n y C8 N7 GTP doub 261 n y C8 H8 GTP sing 262 n n N7 C5 GTP sing 263 n y C5 C6 GTP sing 264 n n C5 C4 GTP doub 265 n y C6 O6 GTP doub 266 n n C6 N1 GTP sing 267 n n N1 C2 GTP sing 268 n n N1 HN1 GTP sing 269 n n C2 N2 GTP sing 270 n n C2 N3 GTP doub 271 n n N2 HN21 GTP sing 272 n n N2 HN22 GTP sing 273 n n N3 C4 GTP sing 274 n n # _atom_sites.entry_id 1IA0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 500 500 GTP GTP . E 5 GDP B 1 501 501 GDP GDP . F 6 TXL B 1 502 502 TXL TXL . G 7 MG K 1 501 501 MG MG . H 8 ACP K 1 503 503 ACP ACP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 -22.441 -126.397 114.143 1 20 ? PG GTP 500 A 1 HETATM 2 O O1G GTP . . . D 4 -23.607 -125.9 113.379 1 20 ? O1G GTP 500 A 1 HETATM 3 O O2G GTP . . . D 4 -22.706 -127.909 114.299 1 20 ? O2G GTP 500 A 1 HETATM 4 O O3G GTP . . . D 4 -22.518 -125.763 115.619 1 20 ? O3G GTP 500 A 1 HETATM 5 O O3B GTP . . . D 4 -21.099 -126.113 113.362 1 20 ? O3B GTP 500 A 1 HETATM 6 P PB GTP . . . D 4 -20.726 -124.682 112.78 1 20 ? PB GTP 500 A 1 HETATM 7 O O1B GTP . . . D 4 -20.468 -124.013 114.041 1 20 ? O1B GTP 500 A 1 HETATM 8 O O2B GTP . . . D 4 -21.496 -124.012 111.685 1 20 ? O2B GTP 500 A 1 HETATM 9 O O3A GTP . . . D 4 -19.341 -124.982 112.246 1 20 ? O3A GTP 500 A 1 HETATM 10 P PA GTP . . . D 4 -18.035 -124.449 112.881 1 20 ? PA GTP 500 A 1 HETATM 11 O O1A GTP . . . D 4 -17.735 -125.303 114.065 1 20 ? O1A GTP 500 A 1 HETATM 12 O O2A GTP . . . D 4 -18.221 -122.98 113.045 1 20 ? O2A GTP 500 A 1 HETATM 13 O O5' GTP . . . D 4 -16.999 -124.783 111.775 1 20 ? O5' GTP 500 A 1 HETATM 14 C C5' GTP . . . D 4 -16.802 -126.107 111.351 1 20 ? C5' GTP 500 A 1 HETATM 15 C C4' GTP . . . D 4 -15.642 -126.177 110.49 1 20 ? C4' GTP 500 A 1 HETATM 16 O O4' GTP . . . D 4 -15.79 -125.102 109.571 1 20 ? O4' GTP 500 A 1 HETATM 17 C C3' GTP . . . D 4 -14.381 -125.971 111.21 1 20 ? C3' GTP 500 A 1 HETATM 18 O O3' GTP . . . D 4 -13.48 -127.001 110.882 1 20 ? O3' GTP 500 A 1 HETATM 19 C C2' GTP . . . D 4 -13.87 -124.701 110.639 1 20 ? C2' GTP 500 A 1 HETATM 20 O O2' GTP . . . D 4 -12.539 -124.792 110.444 1 20 ? O2' GTP 500 A 1 HETATM 21 C C1' GTP . . . D 4 -14.578 -124.564 109.342 1 20 ? C1' GTP 500 A 1 HETATM 22 N N9 GTP . . . D 4 -14.822 -123.177 108.997 1 20 ? N9 GTP 500 A 1 HETATM 23 C C8 GTP . . . D 4 -15.762 -122.336 109.514 1 20 ? C8 GTP 500 A 1 HETATM 24 N N7 GTP . . . D 4 -15.733 -121.119 109.032 1 20 ? N7 GTP 500 A 1 HETATM 25 C C5 GTP . . . D 4 -14.692 -121.165 108.15 1 20 ? C5 GTP 500 A 1 HETATM 26 C C6 GTP . . . D 4 -14.243 -120.182 107.274 1 20 ? C6 GTP 500 A 1 HETATM 27 O O6 GTP . . . D 4 -14.689 -119.052 107.082 1 20 ? O6 GTP 500 A 1 HETATM 28 N N1 GTP . . . D 4 -13.264 -120.665 106.478 1 20 ? N1 GTP 500 A 1 HETATM 29 C C2 GTP . . . D 4 -12.742 -121.928 106.55 1 20 ? C2 GTP 500 A 1 HETATM 30 N N2 GTP . . . D 4 -11.755 -122.195 105.728 1 20 ? N2 GTP 500 A 1 HETATM 31 N N3 GTP . . . D 4 -13.155 -122.87 107.358 1 20 ? N3 GTP 500 A 1 HETATM 32 C C4 GTP . . . D 4 -14.138 -122.428 108.115 1 20 ? C4 GTP 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #