data_1IA0
#
_model_server_result.job_id            FdxU3uTMknh-6nA_ObddAQ 
_model_server_result.datetime_utc      '2025-02-27 12:06:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ia0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":503}' 
#
_entry.id    1IA0 
#
_exptl.entry_id    1IA0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IA0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OG SER 120 K SER 104 1_555 G MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc2 G MG MG . K MG 501 1_555 H O2G ACP . K ACP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 G MG MG . K MG 501 1_555 H O1B ACP . K ACP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     1IA0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 500 500 GTP GTP . 
E 5 GDP B 1 501 501 GDP GDP . 
F 6 TXL B 1 502 502 TXL TXL . 
G 7 MG K 1 501 501 MG MG . 
H 8 ACP K 1 503 503 ACP ACP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . H 8 -43.983 -152.234 79.818 1 34.77 ? PG ACP 503 K 1 
HETATM 2 O O1G ACP . . . H 8 -42.548 -152.253 79.409 1 37.77 ? O1G ACP 503 K 1 
HETATM 3 O O2G ACP . . . H 8 -44.061 -152.669 81.358 1 33.27 ? O2G ACP 503 K 1 
HETATM 4 O O3G ACP . . . H 8 -44.606 -150.9 79.615 1 36.19 ? O3G ACP 503 K 1 
HETATM 5 P PB ACP . . . H 8 -44.616 -155.225 78.994 1 23.47 ? PB ACP 503 K 1 
HETATM 6 O O1B ACP . . . H 8 -44.822 -155.555 80.418 1 21.7 ? O1B ACP 503 K 1 
HETATM 7 O O2B ACP . . . H 8 -43.249 -155.62 78.469 1 28.06 ? O2B ACP 503 K 1 
HETATM 8 C C3B ACP . . . H 8 -44.932 -153.46 78.854 1 30.24 ? C3B ACP 503 K 1 
HETATM 9 P PA ACP . . . H 8 -47.109 -156.571 78.281 1 26.5 ? PA ACP 503 K 1 
HETATM 10 O O1A ACP . . . H 8 -48.048 -155.513 78.64 1 29.85 ? O1A ACP 503 K 1 
HETATM 11 O O2A ACP . . . H 8 -47.077 -157.633 79.288 1 27.68 ? O2A ACP 503 K 1 
HETATM 12 O O3A ACP . . . H 8 -45.651 -155.963 78.077 1 29.26 ? O3A ACP 503 K 1 
HETATM 13 O O5' ACP . . . H 8 -47.37 -157.139 76.813 1 23.82 ? O5' ACP 503 K 1 
HETATM 14 C C5' ACP . . . H 8 -47.886 -156.278 75.774 1 24.56 ? C5' ACP 503 K 1 
HETATM 15 C C4' ACP . . . H 8 -49.07 -156.991 75.104 1 25.18 ? C4' ACP 503 K 1 
HETATM 16 O O4' ACP . . . H 8 -48.657 -158.245 74.537 1 24.22 ? O4' ACP 503 K 1 
HETATM 17 C C3' ACP . . . H 8 -50.223 -157.306 76.075 1 27.09 ? C3' ACP 503 K 1 
HETATM 18 O O3' ACP . . . H 8 -51.473 -156.991 75.447 1 26.34 ? O3' ACP 503 K 1 
HETATM 19 C C2' ACP . . . H 8 -50.054 -158.796 76.393 1 26.93 ? C2' ACP 503 K 1 
HETATM 20 O O2' ACP . . . H 8 -51.27 -159.429 76.835 1 28.51 ? O2' ACP 503 K 1 
HETATM 21 C C1' ACP . . . H 8 -49.475 -159.322 75.079 1 26.25 ? C1' ACP 503 K 1 
HETATM 22 N N9 ACP . . . H 8 -48.617 -160.55 75.231 1 25.96 ? N9 ACP 503 K 1 
HETATM 23 C C8 ACP . . . H 8 -47.367 -160.548 75.762 1 27.23 ? C8 ACP 503 K 1 
HETATM 24 N N7 ACP . . . H 8 -46.872 -161.773 75.733 1 26.62 ? N7 ACP 503 K 1 
HETATM 25 C C5 ACP . . . H 8 -47.781 -162.587 75.19 1 27.6 ? C5 ACP 503 K 1 
HETATM 26 C C6 ACP . . . H 8 -47.8 -163.955 74.9 1 27.85 ? C6 ACP 503 K 1 
HETATM 27 N N6 ACP . . . H 8 -46.762 -164.746 75.178 1 27.34 ? N6 ACP 503 K 1 
HETATM 28 N N1 ACP . . . H 8 -48.935 -164.481 74.32 1 28.23 ? N1 ACP 503 K 1 
HETATM 29 C C2 ACP . . . H 8 -50.021 -163.7 74.016 1 28.15 ? C2 ACP 503 K 1 
HETATM 30 N N3 ACP . . . H 8 -49.984 -162.392 74.293 1 27.7 ? N3 ACP 503 K 1 
HETATM 31 C C4 ACP . . . H 8 -48.877 -161.782 74.874 1 26.83 ? C4 ACP 503 K 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#