data_1IA0 # _model_server_result.job_id j68rpSP7Hqi4OfuGYIQoxA _model_server_result.datetime_utc '2024-10-18 16:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ia0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 1IA0 # _exptl.entry_id 1IA0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 505.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IA0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 224 A TYR 224 1_555 D O2' GTP . A GTP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? covale ? covale2 B OE1 GLN 15 B GLN 15 1_555 E O6 GDP . B GDP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale3 B C GLY 141 B GLY 143 1_555 E O1B GDP . B GDP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale4 B CA GLY 141 B GLY 143 1_555 E O1B GDP . B GDP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale5 B O GLY 141 B GLY 143 1_555 E O3B GDP . B GDP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? covale ? covale6 B CB SER 176 B SER 178 1_555 E O3' GDP . B GDP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale7 B CD2 HIS 227 B HIS 229 1_555 F C37 TXL . B TXL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale8 B CD2 HIS 227 B HIS 229 1_555 F C38 TXL . B TXL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? covale ? covale9 B O ARG 359 B ARG 369 1_555 F O9 TXL . B TXL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? covale ? covale10 B O ARG 359 B ARG 369 1_555 F O10 TXL . B TXL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc1 C OG SER 120 K SER 104 1_555 G MG MG . K MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 G MG MG . K MG 501 1_555 H O2G ACP . K ACP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 G MG MG . K MG 501 1_555 H O1B ACP . K ACP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # _atom_sites.entry_id 1IA0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 500 500 GTP GTP . E 5 GDP B 1 501 501 GDP GDP . F 6 TXL B 1 502 502 TXL TXL . G 7 MG K 1 501 501 MG MG . H 8 ACP K 1 503 503 ACP ACP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . H 8 -43.983 -152.234 79.818 1 34.77 ? PG ACP 503 K 1 HETATM 2 O O1G ACP . . . H 8 -42.548 -152.253 79.409 1 37.77 ? O1G ACP 503 K 1 HETATM 3 O O2G ACP . . . H 8 -44.061 -152.669 81.358 1 33.27 ? O2G ACP 503 K 1 HETATM 4 O O3G ACP . . . H 8 -44.606 -150.9 79.615 1 36.19 ? O3G ACP 503 K 1 HETATM 5 P PB ACP . . . H 8 -44.616 -155.225 78.994 1 23.47 ? PB ACP 503 K 1 HETATM 6 O O1B ACP . . . H 8 -44.822 -155.555 80.418 1 21.7 ? O1B ACP 503 K 1 HETATM 7 O O2B ACP . . . H 8 -43.249 -155.62 78.469 1 28.06 ? O2B ACP 503 K 1 HETATM 8 C C3B ACP . . . H 8 -44.932 -153.46 78.854 1 30.24 ? C3B ACP 503 K 1 HETATM 9 P PA ACP . . . H 8 -47.109 -156.571 78.281 1 26.5 ? PA ACP 503 K 1 HETATM 10 O O1A ACP . . . H 8 -48.048 -155.513 78.64 1 29.85 ? O1A ACP 503 K 1 HETATM 11 O O2A ACP . . . H 8 -47.077 -157.633 79.288 1 27.68 ? O2A ACP 503 K 1 HETATM 12 O O3A ACP . . . H 8 -45.651 -155.963 78.077 1 29.26 ? O3A ACP 503 K 1 HETATM 13 O O5' ACP . . . H 8 -47.37 -157.139 76.813 1 23.82 ? O5' ACP 503 K 1 HETATM 14 C C5' ACP . . . H 8 -47.886 -156.278 75.774 1 24.56 ? C5' ACP 503 K 1 HETATM 15 C C4' ACP . . . H 8 -49.07 -156.991 75.104 1 25.18 ? C4' ACP 503 K 1 HETATM 16 O O4' ACP . . . H 8 -48.657 -158.245 74.537 1 24.22 ? O4' ACP 503 K 1 HETATM 17 C C3' ACP . . . H 8 -50.223 -157.306 76.075 1 27.09 ? C3' ACP 503 K 1 HETATM 18 O O3' ACP . . . H 8 -51.473 -156.991 75.447 1 26.34 ? O3' ACP 503 K 1 HETATM 19 C C2' ACP . . . H 8 -50.054 -158.796 76.393 1 26.93 ? C2' ACP 503 K 1 HETATM 20 O O2' ACP . . . H 8 -51.27 -159.429 76.835 1 28.51 ? O2' ACP 503 K 1 HETATM 21 C C1' ACP . . . H 8 -49.475 -159.322 75.079 1 26.25 ? C1' ACP 503 K 1 HETATM 22 N N9 ACP . . . H 8 -48.617 -160.55 75.231 1 25.96 ? N9 ACP 503 K 1 HETATM 23 C C8 ACP . . . H 8 -47.367 -160.548 75.762 1 27.23 ? C8 ACP 503 K 1 HETATM 24 N N7 ACP . . . H 8 -46.872 -161.773 75.733 1 26.62 ? N7 ACP 503 K 1 HETATM 25 C C5 ACP . . . H 8 -47.781 -162.587 75.19 1 27.6 ? C5 ACP 503 K 1 HETATM 26 C C6 ACP . . . H 8 -47.8 -163.955 74.9 1 27.85 ? C6 ACP 503 K 1 HETATM 27 N N6 ACP . . . H 8 -46.762 -164.746 75.178 1 27.34 ? N6 ACP 503 K 1 HETATM 28 N N1 ACP . . . H 8 -48.935 -164.481 74.32 1 28.23 ? N1 ACP 503 K 1 HETATM 29 C C2 ACP . . . H 8 -50.021 -163.7 74.016 1 28.15 ? C2 ACP 503 K 1 HETATM 30 N N3 ACP . . . H 8 -49.984 -162.392 74.293 1 27.7 ? N3 ACP 503 K 1 HETATM 31 C C4 ACP . . . H 8 -48.877 -161.782 74.874 1 26.83 ? C4 ACP 503 K 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #