data_1IAQ # _model_server_result.job_id ktUGr027UQaJCujcU_RGxQ _model_server_result.datetime_utc '2025-03-12 20:06:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iaq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":167}' # _entry.id 1IAQ # _exptl.entry_id 1IAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IAQ _cell.length_a 63.89 _cell.length_b 79.06 _cell.length_c 94.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,F,G 2 1 C,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 E O2B GNP . A GNP 167 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc3 E O2G GNP . A GNP 167 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc4 B OG SER 17 B SER 17 1_555 F MG MG . B MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc5 G O2G GNP . B GNP 1167 1_555 F MG MG . B MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 G O2B GNP . B GNP 1167 1_555 F MG MG . B MG 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc7 C OG SER 17 C SER 17 1_555 H MG MG . C MG 2168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc8 I O2B GNP . C GNP 2167 1_555 H MG MG . C MG 2168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc9 I O2G GNP . C GNP 2167 1_555 H MG MG . C MG 2168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1IAQ _atom_sites.fract_transf_matrix[1][1] 0.015652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 168 168 MG MG . E 3 GNP A 1 167 167 GNP GNP . F 2 MG B 1 1168 168 MG MG . G 3 GNP B 1 1167 167 GNP GNP . H 2 MG C 1 2168 168 MG MG . I 3 GNP C 1 2167 167 GNP GNP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 3 23.099 20.786 34.168 1 42.1 ? PG GNP 167 A 1 HETATM 2 O O1G GNP . . . E 3 23.317 21.864 33.183 1 41.7 ? O1G GNP 167 A 1 HETATM 3 O O2G GNP . . . E 3 22.494 21.322 35.397 1 43.64 ? O2G GNP 167 A 1 HETATM 4 O O3G GNP . . . E 3 24.525 20.377 34.617 1 42.53 ? O3G GNP 167 A 1 HETATM 5 N N3B GNP . . . E 3 22.343 19.468 33.538 1 40.62 ? N3B GNP 167 A 1 HETATM 6 P PB GNP . . . E 3 21.07 18.707 34.256 1 41.21 ? PB GNP 167 A 1 HETATM 7 O O1B GNP . . . E 3 21.41 17.438 34.891 1 40.79 ? O1B GNP 167 A 1 HETATM 8 O O2B GNP . . . E 3 20.245 19.581 35.095 1 41.82 ? O2B GNP 167 A 1 HETATM 9 O O3A GNP . . . E 3 20.088 18.293 33.086 1 42.59 ? O3A GNP 167 A 1 HETATM 10 P PA GNP . . . E 3 18.544 18.724 32.956 1 42.62 ? PA GNP 167 A 1 HETATM 11 O O1A GNP . . . E 3 17.814 18.256 34.164 1 42.51 ? O1A GNP 167 A 1 HETATM 12 O O2A GNP . . . E 3 18.48 20.153 32.606 1 41.77 ? O2A GNP 167 A 1 HETATM 13 O O5' GNP . . . E 3 18.104 17.832 31.671 1 43.9 ? O5' GNP 167 A 1 HETATM 14 C C5' GNP . . . E 3 18.857 17.951 30.438 1 43 ? C5' GNP 167 A 1 HETATM 15 C C4' GNP . . . E 3 17.944 17.899 29.206 1 44.4 ? C4' GNP 167 A 1 HETATM 16 O O4' GNP . . . E 3 17.526 16.554 28.95 1 44.1 ? O4' GNP 167 A 1 HETATM 17 C C3' GNP . . . E 3 16.671 18.745 29.324 1 44.5 ? C3' GNP 167 A 1 HETATM 18 O O3' GNP . . . E 3 16.228 19.201 28.027 1 46.96 ? O3' GNP 167 A 1 HETATM 19 C C2' GNP . . . E 3 15.683 17.719 29.907 1 44.34 ? C2' GNP 167 A 1 HETATM 20 O O2' GNP . . . E 3 14.338 18.023 29.521 1 47.43 ? O2' GNP 167 A 1 HETATM 21 C C1' GNP . . . E 3 16.133 16.403 29.244 1 45.34 ? C1' GNP 167 A 1 HETATM 22 N N9 GNP . . . E 3 15.954 15.26 30.157 1 45.42 ? N9 GNP 167 A 1 HETATM 23 C C8 GNP . . . E 3 16.304 15.154 31.488 1 44.2 ? C8 GNP 167 A 1 HETATM 24 N N7 GNP . . . E 3 15.881 14.088 32.057 1 44.78 ? N7 GNP 167 A 1 HETATM 25 C C5 GNP . . . E 3 15.347 13.325 30.995 1 44.8 ? C5 GNP 167 A 1 HETATM 26 C C6 GNP . . . E 3 14.688 12.022 30.966 1 44.74 ? C6 GNP 167 A 1 HETATM 27 O O6 GNP . . . E 3 14.382 11.286 31.912 1 44.6 ? O6 GNP 167 A 1 HETATM 28 N N1 GNP . . . E 3 14.381 11.605 29.666 1 44.04 ? N1 GNP 167 A 1 HETATM 29 C C2 GNP . . . E 3 14.574 12.329 28.538 1 46.35 ? C2 GNP 167 A 1 HETATM 30 N N2 GNP . . . E 3 14.078 11.865 27.394 1 47.04 ? N2 GNP 167 A 1 HETATM 31 N N3 GNP . . . E 3 15.265 13.521 28.546 1 45.45 ? N3 GNP 167 A 1 HETATM 32 C C4 GNP . . . E 3 15.512 14.002 29.809 1 46.8 ? C4 GNP 167 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #