data_1IAU # _model_server_result.job_id 2ejNipw-bU_OYTWE3yeHGQ _model_server_result.datetime_utc '2024-11-22 23:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 1IAU # _exptl.entry_id 1IAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IAU _cell.length_a 48.873 _cell.length_b 75.081 _cell.length_c 80.261 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 NAG MAN C1 O1 . O4 HO4 . sing 4 ? 3 5 3 BMA MAN C1 O1 . O6 HO6 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG ? 302 NAG 3 n C NAG 2 C 2 NAG ? 304 NAG 3 n C MAN 3 C 3 MAN ? 305 MAN 3 n C NAG 4 C 4 NAG ? 306 NAG 3 n C BMA 5 C 5 BMA ? 307 MAN 3 n C FUC 6 C 6 FUC ? 303 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 189 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 153 A CYS 168 1_555 A SG CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 51 A ASN 65 1_555 D C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 84 A ASN 98 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale3 A OG SER 183 A SER 195 1_555 B C ASJ 5 B ASJ 405 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.471 ? covale ? covale4 A OG SER 183 A SER 195 1_555 B C ASJ 5 B ASJ 405 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.482 ? covale ? covale5 B C ACE 1 B ACE 401 1_555 B N ILE 2 B ILE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C PRO 4 B PRO 404 1_555 B N ASJ 5 B ASJ 405 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C PRO 4 B PRO 404 1_555 B N ASJ 5 B ASJ 405 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale10 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale11 C O4 MAN . C MAN 3 1_555 C C1 NAG . C NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale12 C O6 MAN . C MAN 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? metalc ? metalc1 A NE2 HIS 5 A HIS 20 1_555 H ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc2 A NE2 HIS 10 A HIS 25 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 A OE2 GLU 63 A GLU 77 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc4 A NE2 HIS 136 A HIS 151 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 A NE2 HIS 138 A HIS 153 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc6 A OE2 GLU 142 A GLU 157 1_555 H ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 A OE2 GLU 154 A GLU 169 1_555 G ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc8 A OE1 GLU 154 A GLU 169 1_555 G ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 A OD1 ASP 171 A ASP 184 1_555 I ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc10 F ZN ZN . A ZN 502 1_555 J O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc11 H ZN ZN . A ZN 504 1_555 J O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc12 H ZN ZN . A ZN 504 1_555 J O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc13 I ZN ZN . A ZN 505 1_555 J O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 330 n n C1 O1 NAG sing 331 n n C1 O5 NAG sing 332 n n C1 H1 NAG sing 333 n n C2 C3 NAG sing 334 n n C2 N2 NAG sing 335 n n C2 H2 NAG sing 336 n n C3 C4 NAG sing 337 n n C3 O3 NAG sing 338 n n C3 H3 NAG sing 339 n n C4 C5 NAG sing 340 n n C4 O4 NAG sing 341 n n C4 H4 NAG sing 342 n n C5 C6 NAG sing 343 n n C5 O5 NAG sing 344 n n C5 H5 NAG sing 345 n n C6 O6 NAG sing 346 n n C6 H61 NAG sing 347 n n C6 H62 NAG sing 348 n n C7 C8 NAG sing 349 n n C7 N2 NAG sing 350 n n C7 O7 NAG doub 351 n n C8 H81 NAG sing 352 n n C8 H82 NAG sing 353 n n C8 H83 NAG sing 354 n n N2 HN2 NAG sing 355 n n O1 HO1 NAG sing 356 n n O3 HO3 NAG sing 357 n n O4 HO4 NAG sing 358 n n O6 HO6 NAG sing 359 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1IAU _atom_sites.fract_transf_matrix[1][1] 0.020461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 301 301 NAG NAG . E 5 ZN A 1 501 501 ZN ZN2 . F 5 ZN A 1 502 502 ZN ZN2 . G 5 ZN A 1 503 503 ZN ZN2 . H 5 ZN A 1 504 504 ZN ZN2 . I 5 ZN A 1 505 505 ZN ZN2 . J 6 HOH A 1 602 602 HOH HOH . J 6 HOH A 2 603 603 HOH HOH . J 6 HOH A 3 604 604 HOH HOH . J 6 HOH A 4 605 605 HOH HOH . J 6 HOH A 5 606 606 HOH HOH . J 6 HOH A 6 607 607 HOH HOH . J 6 HOH A 7 608 608 HOH HOH . J 6 HOH A 8 609 609 HOH HOH . J 6 HOH A 9 610 610 HOH HOH . J 6 HOH A 10 611 611 HOH HOH . J 6 HOH A 11 612 612 HOH HOH . J 6 HOH A 12 613 613 HOH HOH . J 6 HOH A 13 614 614 HOH HOH . J 6 HOH A 14 615 615 HOH HOH . J 6 HOH A 15 616 616 HOH HOH . J 6 HOH A 16 617 617 HOH HOH . J 6 HOH A 17 618 618 HOH HOH . J 6 HOH A 18 619 619 HOH HOH . J 6 HOH A 19 620 620 HOH HOH . J 6 HOH A 20 621 621 HOH HOH . J 6 HOH A 21 623 623 HOH HOH . J 6 HOH A 22 624 624 HOH HOH . J 6 HOH A 23 625 625 HOH HOH . J 6 HOH A 24 626 626 HOH HOH . J 6 HOH A 25 627 627 HOH HOH . J 6 HOH A 26 628 628 HOH HOH . J 6 HOH A 27 629 629 HOH HOH . J 6 HOH A 28 630 630 HOH HOH . J 6 HOH A 29 631 631 HOH HOH . J 6 HOH A 30 632 632 HOH HOH . J 6 HOH A 31 633 633 HOH HOH . J 6 HOH A 32 634 634 HOH HOH . J 6 HOH A 33 635 635 HOH HOH . J 6 HOH A 34 636 636 HOH HOH . J 6 HOH A 35 637 637 HOH HOH . J 6 HOH A 36 638 638 HOH HOH . J 6 HOH A 37 639 639 HOH HOH . J 6 HOH A 38 640 640 HOH HOH . J 6 HOH A 39 641 641 HOH HOH . J 6 HOH A 40 642 642 HOH HOH . J 6 HOH A 41 643 643 HOH HOH . J 6 HOH A 42 644 644 HOH HOH . J 6 HOH A 43 645 645 HOH HOH . J 6 HOH A 44 646 646 HOH HOH . J 6 HOH A 45 647 647 HOH HOH . J 6 HOH A 46 648 648 HOH HOH . J 6 HOH A 47 649 649 HOH HOH . J 6 HOH A 48 650 650 HOH HOH . J 6 HOH A 49 651 651 HOH HOH . J 6 HOH A 50 652 652 HOH HOH . J 6 HOH A 51 653 653 HOH HOH . J 6 HOH A 52 654 654 HOH HOH . J 6 HOH A 53 655 655 HOH HOH . J 6 HOH A 54 656 656 HOH HOH . J 6 HOH A 55 657 657 HOH HOH . J 6 HOH A 56 658 658 HOH HOH . K 6 HOH B 1 601 601 HOH HOH . K 6 HOH B 2 622 622 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 33.774 31.623 65.474 1 73.13 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . D 4 34.862 32.033 66.486 1 77.45 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . D 4 34.373 32.123 67.921 1 77.52 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . D 4 32.912 31.725 68.034 1 68.52 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . D 4 32.732 30.375 67.314 1 74.45 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . D 4 31.259 29.923 67.395 1 68.26 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . D 4 36.505 30.585 65.214 1 84.84 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . D 4 36.333 29.102 64.9 1 87.04 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . D 4 36.025 31.105 66.38 1 83.13 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . D 4 34.475 33.45 68.38 1 104.49 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . D 4 32.539 31.671 69.382 1 63.13 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . D 4 33.122 30.47 65.977 1 78.89 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . D 4 30.708 30.472 68.572 1 65.92 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . D 4 37.071 31.306 64.411 1 77.18 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #