data_1IAX # _model_server_result.job_id M5UD9WcziVgIR0w8rsxAlA _model_server_result.datetime_utc '2024-11-05 01:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1IAX # _exptl.entry_id 1IAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IAX _cell.length_a 123.2 _cell.length_b 123.2 _cell.length_c 212.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 268 A LYS 278 1_555 D C4A PLP . A PLP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale2 B NZ LYS 268 B LYS 278 1_555 F C4A PLP . B PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1IAX _atom_sites.fract_transf_matrix[1][1] 0.008117 _atom_sites.fract_transf_matrix[1][2] 0.004686 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 600 501 SO4 SO4 . D 3 PLP A 1 500 500 PLP PLP . E 2 SO4 B 1 601 501 SO4 SO4 . F 3 PLP B 1 501 500 PLP PLP . G 4 HOH A 1 601 2 HOH TIP . G 4 HOH A 2 602 3 HOH TIP . G 4 HOH A 3 603 4 HOH TIP . G 4 HOH A 4 604 5 HOH TIP . G 4 HOH A 5 605 8 HOH TIP . G 4 HOH A 6 606 10 HOH TIP . G 4 HOH A 7 607 11 HOH TIP . G 4 HOH A 8 608 14 HOH TIP . G 4 HOH A 9 609 15 HOH TIP . G 4 HOH A 10 610 17 HOH TIP . G 4 HOH A 11 611 18 HOH TIP . H 4 HOH B 1 602 1 HOH TIP . H 4 HOH B 2 603 6 HOH TIP . H 4 HOH B 3 604 7 HOH TIP . H 4 HOH B 4 605 9 HOH TIP . H 4 HOH B 5 606 12 HOH TIP . H 4 HOH B 6 607 13 HOH TIP . H 4 HOH B 7 608 16 HOH TIP . H 4 HOH B 8 609 19 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 3 6.942 41.456 67.024 1 91.96 ? N1 PLP 500 A 1 HETATM 2 C C2 PLP . . . D 3 7.237 41.844 68.301 1 92.4 ? C2 PLP 500 A 1 HETATM 3 C C2A PLP . . . D 3 8.277 41.064 69.104 1 91.84 ? C2A PLP 500 A 1 HETATM 4 C C3 PLP . . . D 3 6.579 42.967 68.88 1 91.52 ? C3 PLP 500 A 1 HETATM 5 O O3 PLP . . . D 3 6.876 43.351 70.176 1 90.45 ? O3 PLP 500 A 1 HETATM 6 C C4 PLP . . . D 3 5.613 43.677 68.118 1 90.22 ? C4 PLP 500 A 1 HETATM 7 C C4A PLP . . . D 3 4.901 44.884 68.713 1 86.77 ? C4A PLP 500 A 1 HETATM 8 C C5 PLP . . . D 3 5.327 43.248 66.794 1 91.55 ? C5 PLP 500 A 1 HETATM 9 C C6 PLP . . . D 3 6.014 42.124 66.269 1 92.4 ? C6 PLP 500 A 1 HETATM 10 C C5A PLP . . . D 3 4.287 43.977 65.936 1 92.05 ? C5A PLP 500 A 1 HETATM 11 O O4P PLP . . . D 3 4.919 44.983 65.137 1 91.48 ? O4P PLP 500 A 1 HETATM 12 P P PLP . . . D 3 3.85 45.746 64.212 0.4 89.98 ? P PLP 500 A 1 HETATM 13 O O1P PLP . . . D 3 2.942 46.559 65.059 1 90.28 ? O1P PLP 500 A 1 HETATM 14 O O2P PLP . . . D 3 3.052 44.763 63.428 1 89.69 ? O2P PLP 500 A 1 HETATM 15 O O3P PLP . . . D 3 4.581 46.636 63.284 1 90.1 ? O3P PLP 500 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #