data_1IAY # _model_server_result.job_id EIwBwbOJAkJsDFa12XzbzQ _model_server_result.datetime_utc '2025-03-05 02:25:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1IAY # _exptl.entry_id 1IAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IAY _cell.length_a 123.1 _cell.length_b 123.1 _cell.length_c 106.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 268 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 278 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.307 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1IAY _atom_sites.fract_transf_matrix[1][1] 0.008123 _atom_sites.fract_transf_matrix[1][2] 0.00469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 500 500 PLP PLP . C 3 AVG A 1 501 501 AVG AVG . D 4 HOH A 1 502 1 HOH TIP . D 4 HOH A 2 503 2 HOH TIP . D 4 HOH A 3 504 3 HOH TIP . D 4 HOH A 4 505 4 HOH TIP . D 4 HOH A 5 506 5 HOH TIP . D 4 HOH A 6 507 6 HOH TIP . D 4 HOH A 7 508 7 HOH TIP . D 4 HOH A 8 509 8 HOH TIP . D 4 HOH A 9 510 9 HOH TIP . D 4 HOH A 10 511 10 HOH TIP . D 4 HOH A 11 512 11 HOH TIP . D 4 HOH A 12 513 12 HOH TIP . D 4 HOH A 13 514 13 HOH TIP . D 4 HOH A 14 515 14 HOH TIP . D 4 HOH A 15 516 15 HOH TIP . D 4 HOH A 16 517 16 HOH TIP . D 4 HOH A 17 518 17 HOH TIP . D 4 HOH A 18 519 18 HOH TIP . D 4 HOH A 19 520 19 HOH TIP . D 4 HOH A 20 521 20 HOH TIP . D 4 HOH A 21 522 21 HOH TIP . D 4 HOH A 22 523 22 HOH TIP . D 4 HOH A 23 524 23 HOH TIP . D 4 HOH A 24 525 24 HOH TIP . D 4 HOH A 25 526 25 HOH TIP . D 4 HOH A 26 527 26 HOH TIP . D 4 HOH A 27 528 27 HOH TIP . D 4 HOH A 28 529 28 HOH TIP . D 4 HOH A 29 530 29 HOH TIP . D 4 HOH A 30 531 30 HOH TIP . D 4 HOH A 31 532 31 HOH TIP . D 4 HOH A 32 533 32 HOH TIP . D 4 HOH A 33 534 33 HOH TIP . D 4 HOH A 34 535 34 HOH TIP . D 4 HOH A 35 536 35 HOH TIP . D 4 HOH A 36 537 36 HOH TIP . D 4 HOH A 37 538 37 HOH TIP . D 4 HOH A 38 539 38 HOH TIP . D 4 HOH A 39 540 39 HOH TIP . D 4 HOH A 40 541 40 HOH TIP . D 4 HOH A 41 542 41 HOH TIP . D 4 HOH A 42 543 42 HOH TIP . D 4 HOH A 43 544 43 HOH TIP . D 4 HOH A 44 545 44 HOH TIP . D 4 HOH A 45 546 45 HOH TIP . D 4 HOH A 46 547 46 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 6.333 41.253 13.742 1 48.21 ? N1 PLP 500 A 1 HETATM 2 C C2 PLP . . . B 2 6.504 41.662 15.026 1 47.08 ? C2 PLP 500 A 1 HETATM 3 C C2A PLP . . . B 2 7.475 40.916 15.924 1 46.13 ? C2A PLP 500 A 1 HETATM 4 C C3 PLP . . . B 2 5.792 42.775 15.523 1 47.36 ? C3 PLP 500 A 1 HETATM 5 O O3 PLP . . . B 2 5.967 43.18 16.831 1 47.12 ? O3 PLP 500 A 1 HETATM 6 C C4 PLP . . . B 2 4.898 43.459 14.679 1 48.41 ? C4 PLP 500 A 1 HETATM 7 C C4A PLP . . . B 2 4.142 44.665 15.198 1 46.07 ? C4A PLP 500 A 1 HETATM 8 C C5 PLP . . . B 2 4.732 43.009 13.341 1 51.61 ? C5 PLP 500 A 1 HETATM 9 C C6 PLP . . . B 2 5.472 41.891 12.899 1 50.3 ? C6 PLP 500 A 1 HETATM 10 C C5A PLP . . . B 2 3.774 43.713 12.38 1 55.7 ? C5A PLP 500 A 1 HETATM 11 O O4P PLP . . . B 2 4.528 44.498 11.446 1 61.2 ? O4P PLP 500 A 1 HETATM 12 P P PLP . . . B 2 3.573 45.225 10.376 0.4 66.32 ? P PLP 500 A 1 HETATM 13 O O1P PLP . . . B 2 2.535 46.024 11.086 1 64.33 ? O1P PLP 500 A 1 HETATM 14 O O2P PLP . . . B 2 2.92 44.212 9.503 1 64.35 ? O2P PLP 500 A 1 HETATM 15 O O3P PLP . . . B 2 4.385 46.132 9.53 1 65.1 ? O3P PLP 500 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #